Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
11:43:08 (11310): wrapper (7.7.26015): starting
11:43:08 (11310): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 11:43:08] Arguments: --nthreads 8
[2026-01-09 11:43:08] Threads: 8
[2026-01-09 11:43:08] Checking for CVMFS
[2026-01-09 11:43:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:43:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:43:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:43:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:43:09] 2.11.0.0 4268 128750 95328 154940 0 1 2522628 4096000 0 130560 2 16390301 99.638 10700973 619 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-09 11:43:09] CVMFS is ok
[2026-01-09 11:43:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 11:43:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 11:43:09] Further information can be found at the LHC@home message board.
[2026-01-09 11:43:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:43:09] Checking for apptainer binary...
[2026-01-09 11:43:09] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-09 11:43:09] apptainer is not installed, using version from CVMFS
[2026-01-09 11:43:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:43:09] WARNING: Environment variable TMPDIR already has value [/tmp/job_11008304/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node267
[2026-01-09 11:43:09] apptainer works
[2026-01-09 11:43:09] Set ATHENA_PROC_NUMBER=8
[2026-01-09 11:43:09] Set ATHENA_CORE_NUMBER=8
[2026-01-09 11:43:09] Starting ATLAS job with PandaID=6963146462
[2026-01-09 11:43:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11008304/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:52:28]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:52:28]  protocol_id=None
[2026-01-09 12:52:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 12:52:28]  replicas=None
[2026-01-09 12:52:28]  scope=mc23_13p6TeV
[2026-01-09 12:52:28]  status=None
[2026-01-09 12:52:28]  status_code=0
[2026-01-09 12:52:28]  storage_token=
[2026-01-09 12:52:28]  surl=/tmp/job_11008304/atlas/pilot/slots/0/PanDA_Pilot-6963146462/log.47898826._026842.job.log.tgz.1
[2026-01-09 12:52:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/00/log.47898826._026842.job.log.tgz.1
[2026-01-09 12:52:28]  workdir=None
[2026-01-09 12:52:28] ]
[2026-01-09 12:52:28] 2026-01-09 11:51:51,377 | INFO     | transferring file log.47898826._026842.job.log.tgz.1 from /tmp/job_11008304/atlas/pilot/slots/0/PanDA_Pilot-6963146462/log.47898826._026842.job.log.tgz.1 to /tmp/j
[2026-01-09 12:52:28] 2026-01-09 11:51:51,377 | INFO     | executing command: /usr/bin/env mv /tmp/job_11008304/atlas/pilot/slots/0/PanDA_Pilot-6963146462/log.47898826._026842.job.log.tgz.1 /tmp/job_11008304/atlas/pilot/sl
[2026-01-09 12:52:28] 2026-01-09 11:51:51,385 | INFO     | adding to output.list: log.47898826._026842.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/00/log.47898826._026842.job.log.tg
[2026-01-09 12:52:28] 2026-01-09 11:51:51,386 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 12:52:28] 2026-01-09 11:51:51,386 | INFO     | summary of transferred files:
[2026-01-09 12:52:28] 2026-01-09 11:51:51,386 | INFO     |  -- lfn=log.47898826._026842.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 12:52:28] 2026-01-09 11:51:51,386 | INFO     | stage-out finished correctly
[2026-01-09 12:52:28] 2026-01-09 11:51:51,504 | INFO     | time since job start (4116s) is within the limit (349056.0s)
[2026-01-09 12:52:28] 2026-01-09 11:51:51,504 | INFO     | 4117s have passed since pilot start - server update state is 'RUNNING'
[2026-01-09 12:52:28] 2026-01-09 11:51:52,172 | WARNING  | process 21655 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 12:52:28] 2026-01-09 11:51:52,172 | INFO     | using path: /tmp/job_11008304/atlas/pilot/slots/0/PanDA_Pilot-6963146462/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 12:52:28] 2026-01-09 11:51:52,255 | INFO     | number of running child processes to parent process 21655: 1
[2026-01-09 12:52:28] 2026-01-09 11:51:52,255 | INFO     | maximum number of monitored processes: 6
[2026-01-09 12:52:28] 2026-01-09 11:51:53,510 | INFO     | time since job start (4118s) is within the limit (349056.0s)
[2026-01-09 12:52:28] 2026-01-09 11:51:53,751 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 12:52:28] 2026-01-09 11:51:54,758 | INFO     | monitor loop #305: job 0:6963146462 is in state 'finished'
[2026-01-09 12:52:28] 2026-01-09 11:51:54,758 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 12:52:28] 2026-01-09 11:51:55,221 | INFO     | job 6963146462 has state=finished
[2026-01-09 12:52:28] 2026-01-09 11:51:55,221 | INFO     | preparing for final server update for job 6963146462 in state='finished'
[2026-01-09 12:52:28] 2026-01-09 11:51:55,222 | INFO     | this job has now completed (state=finished)
[2026-01-09 12:52:28] 2026-01-09 11:51:55,222 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 12:52:28] 2026-01-09 11:51:55,222 | INFO     | log transfer has been attempted: DONE
[2026-01-09 12:52:28] 2026-01-09 11:51:55,222 | INFO     | job 6963146462 has finished - writing final server update
[2026-01-09 12:52:28] 2026-01-09 11:51:55,222 | INFO     | total number of processed events: 400 (read)
[2026-01-09 12:52:28] 2026-01-09 11:51:55,223 | INFO     | executing command: lscpu
[2026-01-09 12:52:28] 2026-01-09 11:51:55,254 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 12:52:28] 2026-01-09 11:51:55,515 | INFO     | time since job start (4120s) is within the limit (349056.0s)
[2026-01-09 12:52:28] 2026-01-09 11:51:56,904 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 12:52:28] 2026-01-09 11:51:56,908 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2380.683078125
[2026-01-09 12:52:28] 2026-01-09 11:51:56,913 | INFO     | using path: /tmp/job_11008304/atlas/pilot/slots/0/PanDA_Pilot-6963146462/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 12:52:28] 2026-01-09 11:51:56,914 | INFO     | extracted standard info from prmon json
[2026-01-09 12:52:28] 2026-01-09 11:51:56,914 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 12:52:28] 2026-01-09 11:51:56,914 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 12:52:28] 2026-01-09 11:51:56,914 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:52:28] 2026-01-09 11:51:56,914 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | sum of square deviations: 70364110.0
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | sum of deviations: -2522682449.999999
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | mean x: 1767957548.0
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | mean y: 2572584.5573770492
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | intersect: 63387094589.94664
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | chi2: 0.013100415648816303
[2026-01-09 12:52:28] 2026-01-09 11:51:56,915 | INFO     | current memory leak: -35.85 B/s (using 61 data points, chi2=0.01)
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | could have reported an average CPU frequency of 2492 MHz (6 samples)
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | ..............................
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . Timing measurements:
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . get job = 0 s
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . initial setup = 1 s
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . payload setup = 2 s
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . stage-in = 0 s
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . payload execution = 4097 s
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . stage-out = 0 s
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | . log creation = 0 s
[2026-01-09 12:52:28] 2026-01-09 11:51:56,916 | INFO     | ..............................
[2026-01-09 12:52:28] 2026-01-09 11:51:57,295 | INFO     | 
[2026-01-09 12:52:28] 2026-01-09 11:51:57,295 | INFO     | job summary report
[2026-01-09 12:52:28] 2026-01-09 11:51:57,295 | INFO     | --------------------------------------------------
[2026-01-09 12:52:28] 2026-01-09 11:51:57,295 | INFO     | PanDA job id: 6963146462
[2026-01-09 12:52:28] 2026-01-09 11:51:57,295 | INFO     | task id: 47898826
[2026-01-09 12:52:28] 2026-01-09 11:51:57,295 | INFO     | errors: (none)
[2026-01-09 12:52:28] 2026-01-09 11:51:57,295 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | pilot state: finished 
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | transexitcode: 0
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | exeerrorcode: 0
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | exeerrordiag: 
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | exitcode: 0
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | exitmsg: OK
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | cpuconsumptiontime: 27319 s
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | nevents: 400
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | neventsw: 0
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | pid: 21655
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | pgrp: 21655
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | corecount: 8
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | event service: False
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | sizes: {0: 2284095, 2: 2284357, 11: 2284385, 4103: 2310444, 4104: 2319472, 4106: 2319528, 4109: 2319850}
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | --------------------------------------------------
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | 
[2026-01-09 12:52:28] 2026-01-09 11:51:57,296 | INFO     | executing command: ls -lF /tmp/job_11008304/atlas/pilot/slots/0
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,305 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | job 6963146462 has completed (purged errors)
[2026-01-09 12:52:28] 2026-01-09 11:51:57,306 | INFO     | overall cleanup function is called
[2026-01-09 12:52:28] 2026-01-09 11:51:58,312 | INFO     | --- collectZombieJob: --- 10, [21655]
[2026-01-09 12:52:28] 2026-01-09 11:51:58,312 | INFO     | zombie collector waiting for pid 21655
[2026-01-09 12:52:28] 2026-01-09 11:51:58,312 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:52:28] 2026-01-09 11:51:58,312 | INFO     | collected zombie processes
[2026-01-09 12:52:28] 2026-01-09 11:51:58,312 | INFO     | will attempt to kill all subprocesses of pid=21655
[2026-01-09 12:52:28] 2026-01-09 11:51:58,399 | INFO     | process IDs to be killed: [21655] (in reverse order)
[2026-01-09 12:52:28] 2026-01-09 11:51:58,429 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:52:28] 2026-01-09 11:51:58,430 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:52:28] 2026-01-09 11:51:58,433 | INFO     | did not find any defunct processes belonging to 21655
[2026-01-09 12:52:28] 2026-01-09 11:51:58,435 | INFO     | did not find any defunct processes belonging to 21655
[2026-01-09 12:52:28] 2026-01-09 11:51:58,435 | INFO     | ready for new job
[2026-01-09 12:52:28] 2026-01-09 11:51:58,435 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:52:28] 2026-01-09 11:51:58,436 | INFO     | ***************************************
[2026-01-09 12:52:28] 2026-01-09 11:51:58,436 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:52:28] 2026-01-09 11:51:58,436 | INFO     | ***************************************
[2026-01-09 12:52:28] 2026-01-09 11:51:58,436 | INFO     | 
[2026-01-09 12:52:28] 2026-01-09 11:51:58,450 | INFO     | architecture information:
[2026-01-09 12:52:28] 2026-01-09 11:51:58,450 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:52:28] 2026-01-09 11:51:58,456 | INFO     | cat /etc/os-release:
[2026-01-09 12:52:28] NAME="CentOS Linux"
[2026-01-09 12:52:28] VERSION="7 (Core)"
[2026-01-09 12:52:28] ID="centos"
[2026-01-09 12:52:28] ID_LIKE="rhel fedora"
[2026-01-09 12:52:28] VERSION_ID="7"
[2026-01-09 12:52:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:52:28] ANSI_COLOR="0;31"
[2026-01-09 12:52:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:52:28] HOME_URL="https://www.centos.org/"
[2026-01-09 12:52:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:52:28] 
[2026-01-09 12:52:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:52:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:52:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:52:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:52:28] 
[2026-01-09 12:52:28] 2026-01-09 11:51:58,456 | INFO     | ***************************************
[2026-01-09 12:52:28] 2026-01-09 11:51:58,959 | INFO     | executing command: df -mP /tmp/job_11008304/atlas/pilot/slots/0
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | INFO     | sufficient remaining disk space (227655286784 B)
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | INFO     | update_server=False
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:52:28] 2026-01-09 11:51:58,965 | INFO     | aborting loop
[2026-01-09 12:52:28] 2026-01-09 11:51:59,076 | INFO     | all data control threads have been joined
[2026-01-09 12:52:28] 2026-01-09 11:51:59,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:52:28] 2026-01-09 11:51:59,803 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:52:28] 2026-01-09 11:51:59,970 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:51:59,970 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:51:59,971 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:00,076 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:00,081 | INFO     | [data] control thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:00,109 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:00,321 | INFO     | all payload control threads have been joined
[2026-01-09 12:52:28] 2026-01-09 11:52:00,360 | INFO     | all job control threads have been joined
[2026-01-09 12:52:28] 2026-01-09 11:52:00,576 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:00,812 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:01,012 | INFO     | [job] validate thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:01,214 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:01,326 | INFO     | [payload] control thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:01,365 | INFO     | [job] control thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:01,456 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:01,463 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:03,809 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:09,801 | INFO     | job.realtimelogging is not enabled
[2026-01-09 12:52:28] 2026-01-09 11:52:10,807 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:52:28] 2026-01-09 11:52:21,381 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:52:28] 2026-01-09 11:52:22,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-09 12:52:28] 2026-01-09 11:52:27,466 | INFO     | all workflow threads have been joined
[2026-01-09 12:52:28] 2026-01-09 11:52:27,466 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:52:28] 2026-01-09 11:52:27,466 | INFO     | traces error code: 0
[2026-01-09 12:52:28] 2026-01-09 11:52:27,466 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:52:28] 2026-01-09 11:52:28,690 | INFO     | PID=15032 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 12:52:28] 2026-01-09 11:52:28,690 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:52:28] 2026-01-09 11:52:28,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:52:28] 2026-01-09 11:52:28,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:52:28] 2026-01-09 11:52:28,690 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:52:28] 2026-01-09 11:52:28,691 | INFO     | [monitor] control thread has ended
[2026-01-09 12:52:28] 2026-01-09 11:52:28,740 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:52:28] 2026-01-09 11:52:28,741 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:52:28] 2026-01-09 11:52:28,742 [wrapper] pilotpid: 15032
[2026-01-09 12:52:28] 2026-01-09 11:52:28,743 [wrapper] Pilot exit status: 0
[2026-01-09 12:52:28] 2026-01-09 11:52:28,748 [wrapper] pandaids: 6963146462
[2026-01-09 12:52:28] 2026-01-09 11:52:28,768 [wrapper] cleanup supervisor_pilot 16636 15033
[2026-01-09 12:52:28] 2026-01-09 11:52:28,770 [wrapper] Test setup, not cleaning
[2026-01-09 12:52:28] 2026-01-09 11:52:28,771 [wrapper] apfmon messages muted
[2026-01-09 12:52:28] 2026-01-09 11:52:28,772 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:52:28] 2026-01-09 11:52:28,773 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:52:28]  *** Error codes and diagnostics ***
[2026-01-09 12:52:28]     "exeErrorCode": 0,
[2026-01-09 12:52:28]     "exeErrorDiag": "",
[2026-01-09 12:52:28]     "pilotErrorCode": 0,
[2026-01-09 12:52:28]     "pilotErrorDiag": "",
[2026-01-09 12:52:28]  *** Listing of results directory ***
[2026-01-09 12:52:28] total 433288
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 12:52:28] -rwx------ 1 mf493845 unix-user     36322 Jan  8 16:05 runpilot2-wrapper.sh
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user      5112 Jan  8 16:07 queuedata.json
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user       100 Jan  9 10:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:52:28] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  9 10:46 run_atlas
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user       105 Jan  9 10:46 job.xml
[2026-01-09 12:52:28] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 11:43 start_atlas.sh
[2026-01-09 12:52:28] drwxrwx--x 2 mf493845 unix-user       100 Jan  9 11:43 shared
[2026-01-09 12:52:28] -rw-r--r-- 2 mf493845 unix-user    592397 Jan  9 11:43 input.tar.gz
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user      6390 Jan  9 11:43 init_data.xml
[2026-01-09 12:52:28] -rw-r--r-- 2 mf493845 unix-user 223491059 Jan  9 11:43 EVNT.47898824._001058.pool.root.1
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user         0 Jan  9 11:43 boinc_setup_complete
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user      8192 Jan  9 11:43 boinc_mmap_file
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user         0 Jan  9 11:43 boinc_lockfile
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user      2519 Jan  9 11:43 pandaJob.out
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user    989369 Jan  9 11:43 agis_schedconf.cvmfs.json
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user   1516240 Jan  9 11:43 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:52:28] drwx------ 5 mf493845 unix-user       440 Jan  9 11:43 pilot3
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user 214390205 Jan  9 12:51 HITS.47898826._026842.pool.root.1
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user      1016 Jan  9 12:51 memory_monitor_summary.json
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user        95 Jan  9 12:51 pilot_heartbeat.json
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user    330037 Jan  9 12:51 log.47898826._026842.job.log.tgz.1
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user      7775 Jan  9 12:51 heartbeat.json
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user       745 Jan  9 12:52 pilotlog.txt
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user    628817 Jan  9 12:52 log.47898826._026842.job.log.1
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user       357 Jan  9 12:52 output.list
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user       620 Jan  9 12:52 runtime_log
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user    983040 Jan  9 12:52 result.tar.gz
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user      9220 Jan  9 12:52 runtime_log.err
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user       646 Jan  9 12:52 IGJODmNl6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDmkKDmKukTbn.diag
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user     22351 Jan  9 12:52 stderr.txt
[2026-01-09 12:52:28] HITS file was successfully produced:
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user 214390205 Jan  9 12:51 shared/HITS.pool.root.1
[2026-01-09 12:52:28]  *** Contents of shared directory: ***
[2026-01-09 12:52:28] total 429180
[2026-01-09 12:52:28] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 11:43 start_atlas.sh
[2026-01-09 12:52:28] -rw-r--r-- 2 mf493845 unix-user    592397 Jan  9 11:43 input.tar.gz
[2026-01-09 12:52:28] -rw-r--r-- 2 mf493845 unix-user 223491059 Jan  9 11:43 ATLAS.root_0
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user 214390205 Jan  9 12:51 HITS.pool.root.1
[2026-01-09 12:52:28] -rw------- 1 mf493845 unix-user    983040 Jan  9 12:52 result.tar.gz
12:52:30 (11310): run_atlas exited; CPU time 27371.857564
12:52:30 (11310): called boinc_finish(0)

</stderr_txt>
]]>

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