Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:03:33 (794043): wrapper (7.7.26015): starting
20:03:33 (794043): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 20:03:33] Arguments: --nthreads 4
[2026-01-09 20:03:33] Threads: 4
[2026-01-09 20:03:33] Checking for CVMFS
[2026-01-09 20:03:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:03:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:03:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:03:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:03:33] 2.9.2.0 99878 2441 87704 154953 0 57 36318299 36864001 0 130560 0 1783197 99.989 92343 5588 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 20:03:33] CVMFS is ok
[2026-01-09 20:03:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:03:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:03:33] Further information can be found at the LHC@home message board.
[2026-01-09 20:03:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:03:33] Checking for apptainer binary...
[2026-01-09 20:03:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:03:33] Running /usr/bin/apptainer --version
[2026-01-09 20:03:33] apptainer version 1.4.1-1.1
[2026-01-09 20:03:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:03:34] thA315a
[2026-01-09 20:03:34] apptainer works
[2026-01-09 20:03:34] Set ATHENA_PROC_NUMBER=4
[2026-01-09 20:03:34] Set ATHENA_CORE_NUMBER=4
[2026-01-09 20:03:34] Starting ATLAS job with PandaID=6963156243
[2026-01-09 20:03:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:41:54]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | job 6963156243 has completed (purged errors)
[2026-01-09 21:41:54] 2026-01-09 20:41:19,558 | INFO     | overall cleanup function is called
[2026-01-09 21:41:54] 2026-01-09 20:41:20,565 | INFO     | --- collectZombieJob: --- 10, [804412]
[2026-01-09 21:41:54] 2026-01-09 20:41:20,565 | INFO     | zombie collector waiting for pid 804412
[2026-01-09 21:41:54] 2026-01-09 20:41:20,565 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:41:54] 2026-01-09 20:41:20,565 | INFO     | collected zombie processes
[2026-01-09 21:41:54] 2026-01-09 20:41:20,565 | INFO     | will attempt to kill all subprocesses of pid=804412
[2026-01-09 21:41:54] 2026-01-09 20:41:20,610 | INFO     | process IDs to be killed: [804412] (in reverse order)
[2026-01-09 21:41:54] 2026-01-09 20:41:20,641 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:41:54] 2026-01-09 20:41:20,641 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:41:54] 2026-01-09 20:41:20,643 | INFO     | did not find any defunct processes belonging to 804412
[2026-01-09 21:41:54] 2026-01-09 20:41:20,644 | INFO     | did not find any defunct processes belonging to 804412
[2026-01-09 21:41:54] 2026-01-09 20:41:20,644 | INFO     | ready for new job
[2026-01-09 21:41:54] 2026-01-09 20:41:20,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:41:54] 2026-01-09 20:41:20,645 | INFO     | ***************************************
[2026-01-09 21:41:54] 2026-01-09 20:41:20,645 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:41:54] 2026-01-09 20:41:20,645 | INFO     | ***************************************
[2026-01-09 21:41:54] 2026-01-09 20:41:20,645 | INFO     | 
[2026-01-09 21:41:54] 2026-01-09 20:41:20,646 | INFO     | architecture information:
[2026-01-09 21:41:54] 2026-01-09 20:41:20,646 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:41:54] 2026-01-09 20:41:20,659 | INFO     | cat /etc/os-release:
[2026-01-09 21:41:54] NAME="CentOS Linux"
[2026-01-09 21:41:54] VERSION="7 (Core)"
[2026-01-09 21:41:54] ID="centos"
[2026-01-09 21:41:54] ID_LIKE="rhel fedora"
[2026-01-09 21:41:54] VERSION_ID="7"
[2026-01-09 21:41:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:41:54] ANSI_COLOR="0;31"
[2026-01-09 21:41:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:41:54] HOME_URL="https://www.centos.org/"
[2026-01-09 21:41:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:41:54] 
[2026-01-09 21:41:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:41:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:41:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:41:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:41:54] 
[2026-01-09 21:41:54] 2026-01-09 20:41:20,659 | INFO     | ***************************************
[2026-01-09 21:41:54] 2026-01-09 20:41:21,162 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 21:41:54] 2026-01-09 20:41:21,178 | INFO     | sufficient remaining disk space (222589616128 B)
[2026-01-09 21:41:54] 2026-01-09 20:41:21,179 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:41:54] 2026-01-09 20:41:21,179 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:41:54] 2026-01-09 20:41:21,179 | INFO     | update_server=False
[2026-01-09 21:41:54] 2026-01-09 20:41:21,179 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:41:54] 2026-01-09 20:41:21,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:41:54] 2026-01-09 20:41:21,179 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:41:54] 2026-01-09 20:41:21,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:41:54] 2026-01-09 20:41:21,180 | INFO     | aborting loop
[2026-01-09 21:41:54] 2026-01-09 20:41:21,755 | INFO     | all job control threads have been joined
[2026-01-09 21:41:54] 2026-01-09 20:41:22,117 | INFO     | all data control threads have been joined
[2026-01-09 21:41:54] 2026-01-09 20:41:22,185 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:22,185 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:22,185 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:22,357 | INFO     | all payload control threads have been joined
[2026-01-09 21:41:54] 2026-01-09 20:41:22,617 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:22,761 | INFO     | [job] control thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:22,994 | INFO     | [job] validate thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,039 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,122 | INFO     | [data] control thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,177 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,185 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,330 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,363 | INFO     | [payload] control thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,447 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:23,464 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:41:54] 2026-01-09 20:41:23,479 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:27,471 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:32,210 | INFO     | job.realtimelogging is not enabled
[2026-01-09 21:41:54] 2026-01-09 20:41:33,216 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:41:54] 2026-01-09 20:41:47,849 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:41:54] 2026-01-09 20:41:48,855 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139774429947712)>', '<ExcThread(monitor, started 139773628884736)>']
[2026-01-09 21:41:54] 2026-01-09 20:41:51,677 | INFO     | PID=797831 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 21:41:54] 2026-01-09 20:41:51,677 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:41:54] 2026-01-09 20:41:51,677 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:41:54] 2026-01-09 20:41:51,677 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:41:54] 2026-01-09 20:41:51,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:41:54] 2026-01-09 20:41:51,678 | INFO     | [monitor] control thread has ended
[2026-01-09 21:41:54] 2026-01-09 20:41:53,876 | INFO     | all workflow threads have been joined
[2026-01-09 21:41:54] 2026-01-09 20:41:53,876 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:41:54] 2026-01-09 20:41:53,877 | INFO     | traces error code: 0
[2026-01-09 21:41:54] 2026-01-09 20:41:53,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:41:54] 2026-01-09 20:41:53,946 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:41:54] 2026-01-09 20:41:53,950 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:41:54] 2026-01-09 20:41:53,954 [wrapper] pilotpid: 797831
[2026-01-09 21:41:54] 2026-01-09 20:41:53,958 [wrapper] Pilot exit status: 0
[2026-01-09 21:41:54] 2026-01-09 20:41:53,968 [wrapper] pandaids: 6963156243
[2026-01-09 21:41:54] 2026-01-09 20:41:53,989 [wrapper] cleanup supervisor_pilot  816662 797832
[2026-01-09 21:41:54] 2026-01-09 20:41:53,993 [wrapper] Test setup, not cleaning
[2026-01-09 21:41:54] 2026-01-09 20:41:53,996 [wrapper] apfmon messages muted
[2026-01-09 21:41:54] 2026-01-09 20:41:54,000 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:41:54] 2026-01-09 20:41:54,003 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:41:54]  *** Error codes and diagnostics ***
[2026-01-09 21:41:54]     "exeErrorCode": 0,
[2026-01-09 21:41:54]     "exeErrorDiag": "",
[2026-01-09 21:41:54]     "pilotErrorCode": 0,
[2026-01-09 21:41:54]     "pilotErrorDiag": "",
[2026-01-09 21:41:54]  *** Listing of results directory ***
[2026-01-09 21:41:54] total 442424
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 21:41:54] -rwx------ 1 boinc boinc     36322 Jan  8 20:10 runpilot2-wrapper.sh
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc       100 Jan  9 20:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:41:54] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 20:03 run_atlas
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc       105 Jan  9 20:03 job.xml
[2026-01-09 21:41:54] -rw-r--r-- 2 boinc boinc 226390162 Jan  9 20:03 EVNT.47898824._000896.pool.root.1
[2026-01-09 21:41:54] -rw-r--r-- 2 boinc boinc    592392 Jan  9 20:03 input.tar.gz
[2026-01-09 21:41:54] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:03 start_atlas.sh
[2026-01-09 21:41:54] drwxrwx--x 2 boinc boinc      4096 Jan  9 20:03 shared
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:03 boinc_setup_complete
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc      6371 Jan  9 20:03 init_data.xml
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:03 boinc_lockfile
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc      2519 Jan  9 20:03 pandaJob.out
[2026-01-09 21:41:54] -rw------- 1 boinc boinc    989372 Jan  9 20:03 agis_schedconf.cvmfs.json
[2026-01-09 21:41:54] -rw------- 1 boinc boinc   1516240 Jan  9 20:03 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:41:54] drwx------ 5 boinc boinc      4096 Jan  9 20:03 pilot3
[2026-01-09 21:41:54] -rw------- 1 boinc boinc 220458266 Jan  9 21:40 HITS.47898826._031420.pool.root.1
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc       529 Jan  9 21:40 boinc_task_state.xml
[2026-01-09 21:41:54] -rw------- 1 boinc boinc      1017 Jan  9 21:41 memory_monitor_summary.json
[2026-01-09 21:41:54] -rw------- 1 boinc boinc        95 Jan  9 21:41 pilot_heartbeat.json
[2026-01-09 21:41:54] -rw------- 1 boinc boinc    294218 Jan  9 21:41 log.47898826._031420.job.log.tgz.1
[2026-01-09 21:41:54] -rw------- 1 boinc boinc      7756 Jan  9 21:41 heartbeat.json
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc      8192 Jan  9 21:41 boinc_mmap_file
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc        27 Jan  9 21:41 wrapper_checkpoint.txt
[2026-01-09 21:41:54] -rw------- 1 boinc boinc      4823 Jan  9 21:41 pilotlog.txt
[2026-01-09 21:41:54] -rw------- 1 boinc boinc    850746 Jan  9 21:41 log.47898826._031420.job.log.1
[2026-01-09 21:41:54] -rw------- 1 boinc boinc       357 Jan  9 21:41 output.list
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc       620 Jan  9 21:41 runtime_log
[2026-01-09 21:41:54] -rw------- 1 boinc boinc   1167360 Jan  9 21:41 result.tar.gz
[2026-01-09 21:41:54] -rw------- 1 boinc boinc       660 Jan  9 21:41 tTGKDmkZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfLlKDmcukspm.diag
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc      8902 Jan  9 21:41 runtime_log.err
[2026-01-09 21:41:54] -rw-r--r-- 1 boinc boinc     12223 Jan  9 21:41 stderr.txt
[2026-01-09 21:41:54] HITS file was successfully produced:
[2026-01-09 21:41:54] -rw------- 1 boinc boinc 220458266 Jan  9 21:40 shared/HITS.pool.root.1
[2026-01-09 21:41:54]  *** Contents of shared directory: ***
[2026-01-09 21:41:54] total 438124
[2026-01-09 21:41:54] -rw-r--r-- 2 boinc boinc 226390162 Jan  9 20:03 ATLAS.root_0
[2026-01-09 21:41:54] -rw-r--r-- 2 boinc boinc    592392 Jan  9 20:03 input.tar.gz
[2026-01-09 21:41:54] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:03 start_atlas.sh
[2026-01-09 21:41:54] -rw------- 1 boinc boinc 220458266 Jan  9 21:40 HITS.pool.root.1
[2026-01-09 21:41:54] -rw------- 1 boinc boinc   1167360 Jan  9 21:41 result.tar.gz
21:41:55 (794043): run_atlas exited; CPU time 22305.010620
21:41:55 (794043): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN