Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:32:19 (4029325): wrapper (7.7.26015): starting
19:32:19 (4029325): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 19:32:19] Arguments: --nthreads 3
[2026-01-09 19:32:19] Threads: 3
[2026-01-09 19:32:19] Checking for CVMFS
[2026-01-09 19:32:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:32:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:32:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:32:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:32:19] 2.9.2.0 3376493 2701 85524 154952 3 57 21037859 36864001 0 130560 0 1720235 99.989 97506 4979 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 19:32:19] CVMFS is ok
[2026-01-09 19:32:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:32:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:32:19] Further information can be found at the LHC@home message board.
[2026-01-09 19:32:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:32:19] Checking for apptainer binary...
[2026-01-09 19:32:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:32:19] Running /usr/bin/apptainer --version
[2026-01-09 19:32:19] apptainer version 1.4.1-1.1
[2026-01-09 19:32:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:32:19] thA335a
[2026-01-09 19:32:19] apptainer works
[2026-01-09 19:32:19] Set ATHENA_PROC_NUMBER=3
[2026-01-09 19:32:19] Set ATHENA_CORE_NUMBER=3
[2026-01-09 19:32:19] Starting ATLAS job with PandaID=6963146187
[2026-01-09 19:32:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:24:39]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | job 6963146187 has completed (purged errors)
[2026-01-09 21:24:39] 2026-01-09 20:23:50,548 | INFO     | overall cleanup function is called
[2026-01-09 21:24:39] 2026-01-09 20:23:51,555 | INFO     | --- collectZombieJob: --- 10, [4039489]
[2026-01-09 21:24:39] 2026-01-09 20:23:51,555 | INFO     | zombie collector waiting for pid 4039489
[2026-01-09 21:24:39] 2026-01-09 20:23:51,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:24:39] 2026-01-09 20:23:51,555 | INFO     | collected zombie processes
[2026-01-09 21:24:39] 2026-01-09 20:23:51,555 | INFO     | will attempt to kill all subprocesses of pid=4039489
[2026-01-09 21:24:39] 2026-01-09 20:23:51,603 | INFO     | process IDs to be killed: [4039489] (in reverse order)
[2026-01-09 21:24:39] 2026-01-09 20:23:51,629 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:24:39] 2026-01-09 20:23:51,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:24:39] 2026-01-09 20:23:51,631 | INFO     | did not find any defunct processes belonging to 4039489
[2026-01-09 21:24:39] 2026-01-09 20:23:51,632 | INFO     | did not find any defunct processes belonging to 4039489
[2026-01-09 21:24:39] 2026-01-09 20:23:51,632 | INFO     | ready for new job
[2026-01-09 21:24:39] 2026-01-09 20:23:51,632 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:24:39] 2026-01-09 20:23:51,633 | INFO     | ***************************************
[2026-01-09 21:24:39] 2026-01-09 20:23:51,633 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:24:39] 2026-01-09 20:23:51,633 | INFO     | ***************************************
[2026-01-09 21:24:39] 2026-01-09 20:23:51,633 | INFO     | 
[2026-01-09 21:24:39] 2026-01-09 20:23:51,633 | INFO     | architecture information:
[2026-01-09 21:24:39] 2026-01-09 20:23:51,633 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:24:39] 2026-01-09 20:23:51,641 | INFO     | cat /etc/os-release:
[2026-01-09 21:24:39] NAME="CentOS Linux"
[2026-01-09 21:24:39] VERSION="7 (Core)"
[2026-01-09 21:24:39] ID="centos"
[2026-01-09 21:24:39] ID_LIKE="rhel fedora"
[2026-01-09 21:24:39] VERSION_ID="7"
[2026-01-09 21:24:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:24:39] ANSI_COLOR="0;31"
[2026-01-09 21:24:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:24:39] HOME_URL="https://www.centos.org/"
[2026-01-09 21:24:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:24:39] 
[2026-01-09 21:24:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:24:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:24:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:24:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:24:39] 
[2026-01-09 21:24:39] 2026-01-09 20:23:51,642 | INFO     | ***************************************
[2026-01-09 21:24:39] 2026-01-09 20:23:52,145 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 21:24:39] 2026-01-09 20:23:52,156 | INFO     | sufficient remaining disk space (383746310144 B)
[2026-01-09 21:24:39] 2026-01-09 20:23:52,156 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:24:39] 2026-01-09 20:23:52,156 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:24:39] 2026-01-09 20:23:52,156 | INFO     | update_server=False
[2026-01-09 21:24:39] 2026-01-09 20:23:52,156 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:24:39] 2026-01-09 20:23:52,157 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:24:39] 2026-01-09 20:23:52,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:24:39] 2026-01-09 20:23:52,157 | INFO     | aborting loop
[2026-01-09 21:24:39] 2026-01-09 20:23:52,173 | INFO     | all payload control threads have been joined
[2026-01-09 21:24:39] 2026-01-09 20:23:52,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:24:39] 2026-01-09 20:23:52,933 | INFO     | all job control threads have been joined
[2026-01-09 21:24:39] 2026-01-09 20:23:53,160 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:53,161 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:53,161 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:53,179 | INFO     | [payload] control thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:53,226 | INFO     | all data control threads have been joined
[2026-01-09 21:24:39] 2026-01-09 20:23:53,249 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:53,642 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:53,808 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:53,939 | INFO     | [job] control thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:54,193 | INFO     | [job] validate thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:54,224 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:54,232 | INFO     | [data] control thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:54,251 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:54,266 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:54,555 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:23:55,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:24:39] 2026-01-09 20:23:59,605 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:24:03,155 | INFO     | job.realtimelogging is not enabled
[2026-01-09 21:24:39] 2026-01-09 20:24:04,160 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:24:39] 2026-01-09 20:24:23,139 | INFO     | PID=4033045 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 21:24:39] 2026-01-09 20:24:23,139 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:24:39] 2026-01-09 20:24:23,139 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:24:39] 2026-01-09 20:24:23,139 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:24:39] 2026-01-09 20:24:32,769 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:24:39] 2026-01-09 20:24:34,298 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140115421431616)>', '<ExcThread(monitor, started 140114583877376)>']
[2026-01-09 21:24:39] 2026-01-09 20:24:35,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:24:39] 2026-01-09 20:24:35,203 | INFO     | [monitor] control thread has ended
[2026-01-09 21:24:39] 2026-01-09 20:24:39,303 | INFO     | all workflow threads have been joined
[2026-01-09 21:24:39] 2026-01-09 20:24:39,303 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:24:39] 2026-01-09 20:24:39,303 | INFO     | traces error code: 0
[2026-01-09 21:24:39] 2026-01-09 20:24:39,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:24:39] 2026-01-09 20:24:39,348 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:24:39] 2026-01-09 20:24:39,351 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:24:39] 2026-01-09 20:24:39,353 [wrapper] pilotpid: 4033045
[2026-01-09 21:24:39] 2026-01-09 20:24:39,355 [wrapper] Pilot exit status: 0
[2026-01-09 21:24:39] 2026-01-09 20:24:39,362 [wrapper] pandaids: 6963146187
[2026-01-09 21:24:39] 2026-01-09 20:24:39,380 [wrapper] cleanup supervisor_pilot 4054141 4033046
[2026-01-09 21:24:39] 2026-01-09 20:24:39,382 [wrapper] Test setup, not cleaning
[2026-01-09 21:24:39] 2026-01-09 20:24:39,384 [wrapper] apfmon messages muted
[2026-01-09 21:24:39] 2026-01-09 20:24:39,387 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:24:39] 2026-01-09 20:24:39,389 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:24:39]  *** Error codes and diagnostics ***
[2026-01-09 21:24:39]     "exeErrorCode": 0,
[2026-01-09 21:24:39]     "exeErrorDiag": "",
[2026-01-09 21:24:39]     "pilotErrorCode": 0,
[2026-01-09 21:24:39]     "pilotErrorDiag": "",
[2026-01-09 21:24:39]  *** Listing of results directory ***
[2026-01-09 21:24:39] total 442796
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 21:24:39] -rwx------ 1 boinc boinc     36322 Jan  8 16:05 runpilot2-wrapper.sh
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc      5112 Jan  8 16:07 queuedata.json
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc       100 Jan  9 19:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:24:39] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 19:32 run_atlas
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc       105 Jan  9 19:32 job.xml
[2026-01-09 21:24:39] -rw-r--r-- 2 boinc boinc 225835836 Jan  9 19:32 EVNT.47898824._001049.pool.root.1
[2026-01-09 21:24:39] -rw-r--r-- 2 boinc boinc    592398 Jan  9 19:32 input.tar.gz
[2026-01-09 21:24:39] -rw-r--r-- 2 boinc boinc     15847 Jan  9 19:32 start_atlas.sh
[2026-01-09 21:24:39] drwxrwx--x 2 boinc boinc      4096 Jan  9 19:32 shared
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc         0 Jan  9 19:32 boinc_setup_complete
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc      6446 Jan  9 19:32 init_data.xml
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc         0 Jan  9 19:32 boinc_lockfile
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc      2519 Jan  9 19:32 pandaJob.out
[2026-01-09 21:24:39] -rw------- 1 boinc boinc    989372 Jan  9 19:32 agis_schedconf.cvmfs.json
[2026-01-09 21:24:39] -rw------- 1 boinc boinc   1516240 Jan  9 19:32 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:24:39] drwx------ 5 boinc boinc      4096 Jan  9 19:32 pilot3
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc       529 Jan  9 21:23 boinc_task_state.xml
[2026-01-09 21:24:39] -rw------- 1 boinc boinc 221166651 Jan  9 21:23 HITS.47898826._026617.pool.root.1
[2026-01-09 21:24:39] -rw------- 1 boinc boinc      1018 Jan  9 21:23 memory_monitor_summary.json
[2026-01-09 21:24:39] -rw------- 1 boinc boinc    291586 Jan  9 21:23 log.47898826._026617.job.log.tgz.1
[2026-01-09 21:24:39] -rw------- 1 boinc boinc      7748 Jan  9 21:23 heartbeat.json
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc        27 Jan  9 21:24 wrapper_checkpoint.txt
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc      8192 Jan  9 21:24 boinc_mmap_file
[2026-01-09 21:24:39] -rw------- 1 boinc boinc        95 Jan  9 21:24 pilot_heartbeat.json
[2026-01-09 21:24:39] -rw------- 1 boinc boinc      4824 Jan  9 21:24 pilotlog.txt
[2026-01-09 21:24:39] -rw------- 1 boinc boinc    965841 Jan  9 21:24 log.47898826._026617.job.log.1
[2026-01-09 21:24:39] -rw------- 1 boinc boinc       357 Jan  9 21:24 output.list
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc       620 Jan  9 21:24 runtime_log
[2026-01-09 21:24:39] -rw------- 1 boinc boinc   1280000 Jan  9 21:24 result.tar.gz
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc      8902 Jan  9 21:24 runtime_log.err
[2026-01-09 21:24:39] -rw------- 1 boinc boinc       660 Jan  9 21:24 PN6KDmNl6x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmYZfKDmm2DaRo.diag
[2026-01-09 21:24:39] -rw-r--r-- 1 boinc boinc     11714 Jan  9 21:24 stderr.txt
[2026-01-09 21:24:39] HITS file was successfully produced:
[2026-01-09 21:24:39] -rw------- 1 boinc boinc 221166651 Jan  9 21:23 shared/HITS.pool.root.1
[2026-01-09 21:24:39]  *** Contents of shared directory: ***
[2026-01-09 21:24:39] total 438384
[2026-01-09 21:24:39] -rw-r--r-- 2 boinc boinc 225835836 Jan  9 19:32 ATLAS.root_0
[2026-01-09 21:24:39] -rw-r--r-- 2 boinc boinc    592398 Jan  9 19:32 input.tar.gz
[2026-01-09 21:24:39] -rw-r--r-- 2 boinc boinc     15847 Jan  9 19:32 start_atlas.sh
[2026-01-09 21:24:39] -rw------- 1 boinc boinc 221166651 Jan  9 21:23 HITS.pool.root.1
[2026-01-09 21:24:39] -rw------- 1 boinc boinc   1280000 Jan  9 21:24 result.tar.gz
21:24:41 (4029325): run_atlas exited; CPU time 19370.260263
21:24:41 (4029325): called boinc_finish(0)

</stderr_txt>
]]>

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