Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:04:57 (886563): wrapper (7.7.26015): starting
23:04:57 (886563): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 23:04:57] Arguments: --nthreads 4
[2026-01-09 23:04:57] Threads: 4
[2026-01-09 23:04:57] Checking for CVMFS
[2026-01-09 23:04:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:04:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:04:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:04:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:04:57] 2.9.2.0 172682 2681 91056 154957 0 57 22516188 36864001 0 130560 0 1811986 99.988 98969 5203 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 23:04:57] CVMFS is ok
[2026-01-09 23:04:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:04:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:04:57] Further information can be found at the LHC@home message board.
[2026-01-09 23:04:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:04:57] Checking for apptainer binary...
[2026-01-09 23:04:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 23:04:57] Running /usr/bin/apptainer --version
[2026-01-09 23:04:57] apptainer version 1.4.1-1.1
[2026-01-09 23:04:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:04:57] thA314a
[2026-01-09 23:04:57] apptainer works
[2026-01-09 23:04:57] Set ATHENA_PROC_NUMBER=4
[2026-01-09 23:04:57] Set ATHENA_CORE_NUMBER=4
[2026-01-09 23:04:57] Starting ATLAS job with PandaID=6963156389
[2026-01-09 23:04:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 00:42:16]  *** The last 200 lines of the pilot log: ***
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | job 6963156389 has completed (purged errors)
[2026-01-10 00:42:16] 2026-01-09 23:41:51,435 | INFO     | overall cleanup function is called
[2026-01-10 00:42:16] 2026-01-09 23:41:52,442 | INFO     | --- collectZombieJob: --- 10, [896992]
[2026-01-10 00:42:16] 2026-01-09 23:41:52,442 | INFO     | zombie collector waiting for pid 896992
[2026-01-10 00:42:16] 2026-01-09 23:41:52,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 00:42:16] 2026-01-09 23:41:52,443 | INFO     | collected zombie processes
[2026-01-10 00:42:16] 2026-01-09 23:41:52,443 | INFO     | will attempt to kill all subprocesses of pid=896992
[2026-01-10 00:42:16] 2026-01-09 23:41:52,493 | INFO     | process IDs to be killed: [896992] (in reverse order)
[2026-01-10 00:42:16] 2026-01-09 23:41:52,527 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 00:42:16] 2026-01-09 23:41:52,527 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 00:42:16] 2026-01-09 23:41:52,529 | INFO     | did not find any defunct processes belonging to 896992
[2026-01-10 00:42:16] 2026-01-09 23:41:52,531 | INFO     | did not find any defunct processes belonging to 896992
[2026-01-10 00:42:16] 2026-01-09 23:41:52,531 | INFO     | ready for new job
[2026-01-10 00:42:16] 2026-01-09 23:41:52,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 00:42:16] 2026-01-09 23:41:52,532 | INFO     | ***************************************
[2026-01-10 00:42:16] 2026-01-09 23:41:52,532 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 00:42:16] 2026-01-09 23:41:52,532 | INFO     | ***************************************
[2026-01-10 00:42:16] 2026-01-09 23:41:52,532 | INFO     | 
[2026-01-10 00:42:16] 2026-01-09 23:41:52,532 | INFO     | architecture information:
[2026-01-10 00:42:16] 2026-01-09 23:41:52,532 | INFO     | executing command: cat /etc/os-release
[2026-01-10 00:42:16] 2026-01-09 23:41:52,546 | INFO     | cat /etc/os-release:
[2026-01-10 00:42:16] NAME="CentOS Linux"
[2026-01-10 00:42:16] VERSION="7 (Core)"
[2026-01-10 00:42:16] ID="centos"
[2026-01-10 00:42:16] ID_LIKE="rhel fedora"
[2026-01-10 00:42:16] VERSION_ID="7"
[2026-01-10 00:42:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 00:42:16] ANSI_COLOR="0;31"
[2026-01-10 00:42:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 00:42:16] HOME_URL="https://www.centos.org/"
[2026-01-10 00:42:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 00:42:16] 
[2026-01-10 00:42:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 00:42:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 00:42:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 00:42:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 00:42:16] 
[2026-01-10 00:42:16] 2026-01-09 23:41:52,546 | INFO     | ***************************************
[2026-01-10 00:42:16] 2026-01-09 23:41:53,049 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 00:42:16] 2026-01-09 23:41:53,067 | INFO     | sufficient remaining disk space (236656263168 B)
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | INFO     | update_server=False
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 00:42:16] 2026-01-09 23:41:53,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 00:42:16] 2026-01-09 23:41:53,188 | INFO     | all payload control threads have been joined
[2026-01-10 00:42:16] 2026-01-09 23:41:53,387 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 00:42:16] 2026-01-09 23:41:53,481 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 00:42:16] 2026-01-09 23:41:53,481 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 00:42:16] 2026-01-09 23:41:53,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:42:16] 2026-01-09 23:41:53,481 | INFO     | will abort loop
[2026-01-10 00:42:16] 2026-01-09 23:41:53,678 | INFO     | all data control threads have been joined
[2026-01-10 00:42:16] 2026-01-09 23:41:53,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 00:42:16] 2026-01-09 23:41:54,074 | INFO     | [job] retrieve thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:54,074 | INFO     | [job] queue monitor thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:54,085 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:54,090 | INFO     | all job control threads have been joined
[2026-01-10 00:42:16] 2026-01-09 23:41:54,194 | INFO     | [payload] control thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:54,444 | INFO     | [data] copytool_in thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:54,487 | INFO     | [job] job monitor thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:54,669 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:54,683 | INFO     | [data] control thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:55,096 | INFO     | [job] control thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:55,193 | INFO     | [payload] validate_post thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:55,291 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:55,393 | INFO     | [data] copytool_out thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:55,453 | INFO     | [job] validate thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:55,531 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:55,542 | INFO     | [payload] failed_post thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:41:57,931 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 00:42:16] 2026-01-09 23:42:10,945 | INFO     | [monitor] cgroup control has ended
[2026-01-10 00:42:16] 2026-01-09 23:42:11,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180773951296)>', '<ExcThread(monitor, started 140180098881280)>']
[2026-01-10 00:42:16] 2026-01-09 23:42:11,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 00:42:16] 2026-01-09 23:42:11,160 | INFO     | [monitor] control thread has ended
[2026-01-10 00:42:16] 2026-01-09 23:42:16,095 | INFO     | all workflow threads have been joined
[2026-01-10 00:42:16] 2026-01-09 23:42:16,095 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 00:42:16] 2026-01-09 23:42:16,097 | INFO     | traces error code: 0
[2026-01-10 00:42:16] 2026-01-09 23:42:16,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 00:42:16] 2026-01-09 23:42:16,167 [wrapper] ==== pilot stdout END ====
[2026-01-10 00:42:16] 2026-01-09 23:42:16,171 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 00:42:16] 2026-01-09 23:42:16,175 [wrapper] pilotpid: 890386
[2026-01-10 00:42:16] 2026-01-09 23:42:16,178 [wrapper] Pilot exit status: 0
[2026-01-10 00:42:16] 2026-01-09 23:42:16,189 [wrapper] pandaids: 6963156389
[2026-01-10 00:42:16] 2026-01-09 23:42:16,212 [wrapper] cleanup supervisor_pilot  910117 890387
[2026-01-10 00:42:16] 2026-01-09 23:42:16,216 [wrapper] Test setup, not cleaning
[2026-01-10 00:42:16] 2026-01-09 23:42:16,219 [wrapper] apfmon messages muted
[2026-01-10 00:42:16] 2026-01-09 23:42:16,223 [wrapper] ==== wrapper stdout END ====
[2026-01-10 00:42:16] 2026-01-09 23:42:16,227 [wrapper] ==== wrapper stderr END ====
[2026-01-10 00:42:16]  *** Error codes and diagnostics ***
[2026-01-10 00:42:16]     "exeErrorCode": 0,
[2026-01-10 00:42:16]     "exeErrorDiag": "",
[2026-01-10 00:42:16]     "pilotErrorCode": 0,
[2026-01-10 00:42:16]     "pilotErrorDiag": "",
[2026-01-10 00:42:16]  *** Listing of results directory ***
[2026-01-10 00:42:16] total 442248
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-10 00:42:16] -rwx------ 1 boinc boinc     36322 Jan  8 20:10 runpilot2-wrapper.sh
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc       100 Jan  9 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 00:42:16] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 23:04 run_atlas
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc       105 Jan  9 23:04 job.xml
[2026-01-10 00:42:16] -rw-r--r-- 2 boinc boinc 225353432 Jan  9 23:04 EVNT.47898824._000902.pool.root.1
[2026-01-10 00:42:16] -rw-r--r-- 2 boinc boinc    592397 Jan  9 23:04 input.tar.gz
[2026-01-10 00:42:16] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:04 start_atlas.sh
[2026-01-10 00:42:16] drwxrwx--x 2 boinc boinc      4096 Jan  9 23:04 shared
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:04 boinc_setup_complete
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc      6371 Jan  9 23:04 init_data.xml
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc         0 Jan  9 23:04 boinc_lockfile
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc      2519 Jan  9 23:04 pandaJob.out
[2026-01-10 00:42:16] -rw------- 1 boinc boinc    989398 Jan  9 23:05 agis_schedconf.cvmfs.json
[2026-01-10 00:42:16] -rw------- 1 boinc boinc   1516240 Jan  9 23:05 agis_ddmendpoints.agis.ALL.json
[2026-01-10 00:42:16] drwx------ 5 boinc boinc      4096 Jan  9 23:05 pilot3
[2026-01-10 00:42:16] -rw------- 1 boinc boinc 221365526 Jan 10 00:41 HITS.47898826._031559.pool.root.1
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc       530 Jan 10 00:41 boinc_task_state.xml
[2026-01-10 00:42:16] -rw------- 1 boinc boinc        95 Jan 10 00:41 pilot_heartbeat.json
[2026-01-10 00:42:16] -rw------- 1 boinc boinc      1022 Jan 10 00:41 memory_monitor_summary.json
[2026-01-10 00:42:16] -rw------- 1 boinc boinc    279534 Jan 10 00:41 log.47898826._031559.job.log.tgz.1
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc      8192 Jan 10 00:41 boinc_mmap_file
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc        27 Jan 10 00:41 wrapper_checkpoint.txt
[2026-01-10 00:42:16] -rw------- 1 boinc boinc      7758 Jan 10 00:41 heartbeat.json
[2026-01-10 00:42:16] -rw------- 1 boinc boinc      4742 Jan 10 00:42 pilotlog.txt
[2026-01-10 00:42:16] -rw------- 1 boinc boinc    842704 Jan 10 00:42 log.47898826._031559.job.log.1
[2026-01-10 00:42:16] -rw------- 1 boinc boinc       357 Jan 10 00:42 output.list
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc       620 Jan 10 00:42 runtime_log
[2026-01-10 00:42:16] -rw------- 1 boinc boinc   1136640 Jan 10 00:42 result.tar.gz
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc      8902 Jan 10 00:42 runtime_log.err
[2026-01-10 00:42:16] -rw------- 1 boinc boinc       660 Jan 10 00:42 3EJODmmZAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJ9fKDmQJDImm.diag
[2026-01-10 00:42:16] -rw-r--r-- 1 boinc boinc     11761 Jan 10 00:42 stderr.txt
[2026-01-10 00:42:16] HITS file was successfully produced:
[2026-01-10 00:42:16] -rw------- 1 boinc boinc 221365526 Jan 10 00:41 shared/HITS.pool.root.1
[2026-01-10 00:42:16]  *** Contents of shared directory: ***
[2026-01-10 00:42:16] total 437968
[2026-01-10 00:42:16] -rw-r--r-- 2 boinc boinc 225353432 Jan  9 23:04 ATLAS.root_0
[2026-01-10 00:42:16] -rw-r--r-- 2 boinc boinc    592397 Jan  9 23:04 input.tar.gz
[2026-01-10 00:42:16] -rw-r--r-- 2 boinc boinc     15847 Jan  9 23:04 start_atlas.sh
[2026-01-10 00:42:16] -rw------- 1 boinc boinc 221365526 Jan 10 00:41 HITS.pool.root.1
[2026-01-10 00:42:16] -rw------- 1 boinc boinc   1136640 Jan 10 00:42 result.tar.gz
00:42:18 (886563): run_atlas exited; CPU time 22167.329228
00:42:18 (886563): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN