Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:30:40 (6788): wrapper (7.7.26015): starting
03:30:40 (6788): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 03:30:40] Arguments: --nthreads 12
[2026-01-09 03:30:40] Threads: 12
[2026-01-09 03:30:40] Checking for CVMFS
[2026-01-09 03:30:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 03:30:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 03:30:40] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 03:30:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 03:30:40] 2.11.2.0 723 180751 97104 154937 0 58 15891556 20275201 1 130560 0 70229562 99.901 10360503 36043 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 03:30:40] CVMFS is ok
[2026-01-09 03:30:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 03:30:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 03:30:40] Further information can be found at the LHC@home message board.
[2026-01-09 03:30:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 03:30:40] Checking for apptainer binary...
[2026-01-09 03:30:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 03:30:40] Running /usr/bin/apptainer --version
[2026-01-09 03:30:40] apptainer version 1.3.2-1.el7
[2026-01-09 03:30:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 03:30:42] c-205-1.aglt2.org
[2026-01-09 03:30:42] apptainer works
[2026-01-09 03:30:42] Set ATHENA_PROC_NUMBER=12
[2026-01-09 03:30:42] Set ATHENA_CORE_NUMBER=12
[2026-01-09 03:30:42] Starting ATLAS job with PandaID=6963156583
[2026-01-09 03:30:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:12:12]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:12:12]  protocol_id=None
[2026-01-09 05:12:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 05:12:12]  replicas=None
[2026-01-09 05:12:12]  scope=mc23_13p6TeV
[2026-01-09 05:12:12]  status=None
[2026-01-09 05:12:12]  status_code=0
[2026-01-09 05:12:12]  storage_token=
[2026-01-09 05:12:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963156583/log.47898826._031753.job.log.tgz.1
[2026-01-09 05:12:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/20/log.47898826._031753.job.log.tgz.1
[2026-01-09 05:12:12]  workdir=None
[2026-01-09 05:12:12] ]
[2026-01-09 05:12:12] 2026-01-09 10:11:16,304 | INFO     | transferring file log.47898826._031753.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963156583/log.47898826._031753.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 05:12:12] 2026-01-09 10:11:16,304 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963156583/log.47898826._031753.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._031753.job
[2026-01-09 05:12:12] 2026-01-09 10:11:16,326 | INFO     | adding to output.list: log.47898826._031753.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/20/log.47898826._031753.job.log.tg
[2026-01-09 05:12:12] 2026-01-09 10:11:16,327 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 05:12:12] 2026-01-09 10:11:16,327 | INFO     | summary of transferred files:
[2026-01-09 05:12:12] 2026-01-09 10:11:16,327 | INFO     |  -- lfn=log.47898826._031753.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 05:12:12] 2026-01-09 10:11:16,327 | INFO     | stage-out finished correctly
[2026-01-09 05:12:12] 2026-01-09 10:11:16,411 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 05:12:12] 2026-01-09 10:11:16,492 | INFO     | job 6963156583 has state=finished
[2026-01-09 05:12:12] 2026-01-09 10:11:16,493 | INFO     | preparing for final server update for job 6963156583 in state='finished'
[2026-01-09 05:12:12] 2026-01-09 10:11:16,493 | INFO     | this job has now completed (state=finished)
[2026-01-09 05:12:12] 2026-01-09 10:11:16,494 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 05:12:12] 2026-01-09 10:11:16,494 | INFO     | log transfer has been attempted: DONE
[2026-01-09 05:12:12] 2026-01-09 10:11:16,494 | INFO     | job 6963156583 has finished - writing final server update
[2026-01-09 05:12:12] 2026-01-09 10:11:16,494 | INFO     | total number of processed events: 400 (read)
[2026-01-09 05:12:12] 2026-01-09 10:11:16,495 | INFO     | executing command: lscpu
[2026-01-09 05:12:12] 2026-01-09 10:11:16,519 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 05:12:12] 2026-01-09 10:11:18,242 | INFO     | time since job start (6022s) is within the limit (349056.0s)
[2026-01-09 05:12:12] 2026-01-09 10:11:18,482 | WARNING  | process 17240 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 05:12:12] 2026-01-09 10:11:18,483 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963156583/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:12:12] 2026-01-09 10:11:18,576 | INFO     | number of running child processes to parent process 17240: 1
[2026-01-09 05:12:12] 2026-01-09 10:11:18,577 | INFO     | maximum number of monitored processes: 6
[2026-01-09 05:12:12] 2026-01-09 10:11:20,249 | INFO     | time since job start (6024s) is within the limit (349056.0s)
[2026-01-09 05:12:12] 2026-01-09 10:11:21,080 | INFO     | monitor loop #444: job 0:6963156583 is in state 'finished'
[2026-01-09 05:12:12] 2026-01-09 10:11:21,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,259 | INFO     | time since job start (6026s) is within the limit (349056.0s)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,449 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 05:12:12] 2026-01-09 10:11:22,453 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2026-01-09 05:12:12] 2026-01-09 10:11:22,456 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963156583/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,457 | INFO     | extracted standard info from prmon json
[2026-01-09 05:12:12] 2026-01-09 10:11:22,457 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 05:12:12] 2026-01-09 10:11:22,457 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 05:12:12] 2026-01-09 10:11:22,458 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:12:12] 2026-01-09 10:11:22,458 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:12:12] 2026-01-09 10:11:22,460 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:12:12] 2026-01-09 10:11:22,460 | INFO     | sum of square deviations: 241429643.0
[2026-01-09 05:12:12] 2026-01-09 10:11:22,461 | INFO     | sum of deviations: -13980994643.5
[2026-01-09 05:12:12] 2026-01-09 10:11:22,461 | INFO     | mean x: 1767950563.5
[2026-01-09 05:12:12] 2026-01-09 10:11:22,461 | INFO     | mean y: 2781348.2934782607
[2026-01-09 05:12:12] 2026-01-09 10:11:22,461 | INFO     | intersect: 102383363331.20393
[2026-01-09 05:12:12] 2026-01-09 10:11:22,461 | INFO     | chi2: 0.1043719810661015
[2026-01-09 05:12:12] 2026-01-09 10:11:22,461 | INFO     | current memory leak: -57.91 B/s (using 92 data points, chi2=0.10)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | could have reported an average CPU frequency of 2166 MHz (7 samples)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | ..............................
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | . Timing measurements:
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | . get job = 0 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | . initial setup = 2 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | . payload setup = 6 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | . stage-in = 0 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,462 | INFO     | . payload execution = 5993 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,463 | INFO     | . stage-out = 0 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,463 | INFO     | . log creation = 0 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,463 | INFO     | ..............................
[2026-01-09 05:12:12] 2026-01-09 10:11:22,547 | INFO     | 
[2026-01-09 05:12:12] 2026-01-09 10:11:22,547 | INFO     | job summary report
[2026-01-09 05:12:12] 2026-01-09 10:11:22,547 | INFO     | --------------------------------------------------
[2026-01-09 05:12:12] 2026-01-09 10:11:22,547 | INFO     | PanDA job id: 6963156583
[2026-01-09 05:12:12] 2026-01-09 10:11:22,547 | INFO     | task id: 47898826
[2026-01-09 05:12:12] 2026-01-09 10:11:22,547 | INFO     | errors: (none)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,548 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:12:12] 2026-01-09 10:11:22,548 | INFO     | pilot state: finished 
[2026-01-09 05:12:12] 2026-01-09 10:11:22,548 | INFO     | transexitcode: 0
[2026-01-09 05:12:12] 2026-01-09 10:11:22,548 | INFO     | exeerrorcode: 0
[2026-01-09 05:12:12] 2026-01-09 10:11:22,548 | INFO     | exeerrordiag: 
[2026-01-09 05:12:12] 2026-01-09 10:11:22,548 | INFO     | exitcode: 0
[2026-01-09 05:12:12] 2026-01-09 10:11:22,548 | INFO     | exitmsg: OK
[2026-01-09 05:12:12] 2026-01-09 10:11:22,549 | INFO     | cpuconsumptiontime: 63889 s
[2026-01-09 05:12:12] 2026-01-09 10:11:22,549 | INFO     | nevents: 400
[2026-01-09 05:12:12] 2026-01-09 10:11:22,549 | INFO     | neventsw: 0
[2026-01-09 05:12:12] 2026-01-09 10:11:22,549 | INFO     | pid: 17240
[2026-01-09 05:12:12] 2026-01-09 10:11:22,549 | INFO     | pgrp: 17240
[2026-01-09 05:12:12] 2026-01-09 10:11:22,549 | INFO     | corecount: 12
[2026-01-09 05:12:12] 2026-01-09 10:11:22,549 | INFO     | event service: False
[2026-01-09 05:12:12] 2026-01-09 10:11:22,550 | INFO     | sizes: {0: 2283970, 5: 2284232, 11: 2284288, 6004: 2311011, 6005: 2320065, 6011: 2320203}
[2026-01-09 05:12:12] 2026-01-09 10:11:22,550 | INFO     | --------------------------------------------------
[2026-01-09 05:12:12] 2026-01-09 10:11:22,550 | INFO     | 
[2026-01-09 05:12:12] 2026-01-09 10:11:22,550 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 05:12:12] 2026-01-09 10:11:22,573 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,573 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,574 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,574 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,574 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,574 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,574 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,574 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,575 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,576 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,576 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:12:12] 2026-01-09 10:11:22,577 | INFO     | job 6963156583 has completed (purged errors)
[2026-01-09 05:12:12] 2026-01-09 10:11:22,577 | INFO     | overall cleanup function is called
[2026-01-09 05:12:12] 2026-01-09 10:11:23,381 | INFO     | PID=10759 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 05:12:12] 2026-01-09 10:11:23,585 | INFO     | --- collectZombieJob: --- 10, [17240]
[2026-01-09 05:12:12] 2026-01-09 10:11:23,585 | INFO     | zombie collector waiting for pid 17240
[2026-01-09 05:12:12] 2026-01-09 10:11:23,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:12:12] 2026-01-09 10:11:23,585 | INFO     | collected zombie processes
[2026-01-09 05:12:12] 2026-01-09 10:11:23,586 | INFO     | will attempt to kill all subprocesses of pid=17240
[2026-01-09 05:12:12] 2026-01-09 10:11:23,678 | INFO     | process IDs to be killed: [17240] (in reverse order)
[2026-01-09 05:12:12] 2026-01-09 10:11:23,729 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:12:12] 2026-01-09 10:11:23,730 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:12:12] 2026-01-09 10:11:23,733 | INFO     | did not find any defunct processes belonging to 17240
[2026-01-09 05:12:12] 2026-01-09 10:11:23,737 | INFO     | did not find any defunct processes belonging to 17240
[2026-01-09 05:12:12] 2026-01-09 10:11:23,737 | INFO     | ready for new job
[2026-01-09 05:12:12] 2026-01-09 10:11:23,737 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:12:12] 2026-01-09 10:11:23,738 | INFO     | ***************************************
[2026-01-09 05:12:12] 2026-01-09 10:11:23,738 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:12:12] 2026-01-09 10:11:23,739 | INFO     | ***************************************
[2026-01-09 05:12:12] 2026-01-09 10:11:23,739 | INFO     | 
[2026-01-09 05:12:12] 2026-01-09 10:11:23,739 | INFO     | architecture information:
[2026-01-09 05:12:12] 2026-01-09 10:11:23,740 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:12:12] 2026-01-09 10:11:23,754 | INFO     | cat /etc/os-release:
[2026-01-09 05:12:12] NAME="CentOS Linux"
[2026-01-09 05:12:12] VERSION="7 (Core)"
[2026-01-09 05:12:12] ID="centos"
[2026-01-09 05:12:12] ID_LIKE="rhel fedora"
[2026-01-09 05:12:12] VERSION_ID="7"
[2026-01-09 05:12:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:12:12] ANSI_COLOR="0;31"
[2026-01-09 05:12:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:12:12] HOME_URL="https://www.centos.org/"
[2026-01-09 05:12:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:12:12] 
[2026-01-09 05:12:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:12:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:12:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:12:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:12:12] 
[2026-01-09 05:12:12] 2026-01-09 10:11:23,754 | INFO     | ***************************************
[2026-01-09 05:12:12] 2026-01-09 10:11:24,257 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 05:12:12] 2026-01-09 10:11:24,274 | INFO     | sufficient remaining disk space (29430382592 B)
[2026-01-09 05:12:12] 2026-01-09 10:11:24,274 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:12:12] 2026-01-09 10:11:24,274 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:12:12] 2026-01-09 10:11:24,274 | INFO     | update_server=False
[2026-01-09 05:12:12] 2026-01-09 10:11:24,275 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:12:12] 2026-01-09 10:11:24,275 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:12:12] 2026-01-09 10:11:24,275 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 05:12:12] 2026-01-09 10:11:24,276 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:12:12] 2026-01-09 10:11:24,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:12:12] 2026-01-09 10:11:24,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:12:12] 2026-01-09 10:11:24,387 | INFO     | all data control threads have been joined
[2026-01-09 05:12:12] 2026-01-09 10:11:24,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:12:12] 2026-01-09 10:11:24,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:12:12] 2026-01-09 10:11:24,585 | INFO     | aborting loop
[2026-01-09 05:12:12] 2026-01-09 10:11:25,042 | INFO     | all payload control threads have been joined
[2026-01-09 05:12:12] 2026-01-09 10:11:25,280 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,281 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,392 | INFO     | [data] control thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,471 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,590 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,725 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,755 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,903 | INFO     | [job] validate thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,903 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:25,906 | INFO     | all job control threads have been joined
[2026-01-09 05:12:12] 2026-01-09 10:11:26,047 | INFO     | [payload] control thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:26,149 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:26,257 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:26,428 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:26,911 | INFO     | [job] control thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:27,006 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:12:12] 2026-01-09 10:11:31,012 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:11:34,647 | INFO     | job.realtimelogging is not enabled
[2026-01-09 05:12:12] 2026-01-09 10:11:35,652 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:12:12] 2026-01-09 10:12:05,814 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:12:12] 2026-01-09 10:12:07,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558330697536)>', '<ExcThread(monitor, started 140557368162048)>']
[2026-01-09 05:12:12] 2026-01-09 10:12:07,493 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:12:12] 2026-01-09 10:12:07,493 | INFO     | [monitor] control thread has ended
[2026-01-09 05:12:12] 2026-01-09 10:12:12,472 | INFO     | all workflow threads have been joined
[2026-01-09 05:12:12] 2026-01-09 10:12:12,472 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:12:12] 2026-01-09 10:12:12,472 | INFO     | traces error code: 0
[2026-01-09 05:12:12] 2026-01-09 10:12:12,472 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:12:12] 2026-01-09 10:12:12,575 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:12:12] 2026-01-09 10:12:12,578 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:12:12] 2026-01-09 10:12:12,582 [wrapper] pilotpid: 10759
[2026-01-09 05:12:12] 2026-01-09 10:12:12,586 [wrapper] Pilot exit status: 0
[2026-01-09 05:12:12] 2026-01-09 10:12:12,601 [wrapper] pandaids: 6963156583
[2026-01-09 05:12:12] 2026-01-09 10:12:12,650 [wrapper] cleanup supervisor_pilot 25226 10760
[2026-01-09 05:12:12] 2026-01-09 10:12:12,654 [wrapper] Test setup, not cleaning
[2026-01-09 05:12:12] 2026-01-09 10:12:12,658 [wrapper] apfmon messages muted
[2026-01-09 05:12:12] 2026-01-09 10:12:12,661 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:12:12] 2026-01-09 10:12:12,665 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:12:12]  *** Error codes and diagnostics ***
[2026-01-09 05:12:12]     "exeErrorCode": 0,
[2026-01-09 05:12:12]     "exeErrorDiag": "",
[2026-01-09 05:12:12]     "pilotErrorCode": 0,
[2026-01-09 05:12:12]     "pilotErrorDiag": "",
[2026-01-09 05:12:12]  *** Listing of results directory ***
[2026-01-09 05:12:12] total 443084
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 14:06 pilot3.tar.gz
[2026-01-09 05:12:12] -rwx------ 1 boincer umatlas     36322 Jan  8 14:10 runpilot2-wrapper.sh
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 14:11 queuedata.json
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas       100 Jan  9 03:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:12:12] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 03:30 run_atlas
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas       105 Jan  9 03:30 job.xml
[2026-01-09 05:12:12] -rw-r--r-- 2 boincer umatlas 226527104 Jan  9 03:30 EVNT.47898824._001206.pool.root.1
[2026-01-09 05:12:12] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 03:30 start_atlas.sh
[2026-01-09 05:12:12] drwxrwx--x 2 boincer umatlas      4096 Jan  9 03:30 shared
[2026-01-09 05:12:12] -rw-r--r-- 2 boincer umatlas    592395 Jan  9 03:30 input.tar.gz
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas         0 Jan  9 03:30 boinc_lockfile
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 03:30 pandaJob.out
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas        57 Jan  9 03:30 setup.sh.local
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas    989759 Jan  9 03:30 agis_schedconf.cvmfs.json
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas   1516240 Jan  9 03:30 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:12:12] drwx------ 5 boincer umatlas      4096 Jan  9 03:30 pilot3
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 05:00 init_data.xml
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas 220773057 Jan  9 05:10 HITS.47898826._031753.pool.root.1
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas       530 Jan  9 05:10 boinc_task_state.xml
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas      1047 Jan  9 05:11 memory_monitor_summary.json
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas    397356 Jan  9 05:11 log.47898826._031753.job.log.tgz.1
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas        95 Jan  9 05:11 pilot_heartbeat.json
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas      7854 Jan  9 05:11 heartbeat.json
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas        27 Jan  9 05:11 wrapper_checkpoint.txt
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 05:11 boinc_mmap_file
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas      4624 Jan  9 05:12 pilotlog.txt
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas    854220 Jan  9 05:12 log.47898826._031753.job.log.1
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas       357 Jan  9 05:12 output.list
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas       620 Jan  9 05:12 runtime_log
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas   1269760 Jan  9 05:12 result.tar.gz
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas      9339 Jan  9 05:12 runtime_log.err
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas       659 Jan  9 05:12 d20MDmyZAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhAgKDmdg0GXn.diag
[2026-01-09 05:12:12] -rw-r--r-- 1 boincer umatlas     21821 Jan  9 05:12 stderr.txt
[2026-01-09 05:12:12] HITS file was successfully produced:
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas 220773057 Jan  9 05:10 shared/HITS.pool.root.1
[2026-01-09 05:12:12]  *** Contents of shared directory: ***
[2026-01-09 05:12:12] total 438660
[2026-01-09 05:12:12] -rw-r--r-- 2 boincer umatlas 226527104 Jan  9 03:30 ATLAS.root_0
[2026-01-09 05:12:12] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 03:30 start_atlas.sh
[2026-01-09 05:12:12] -rw-r--r-- 2 boincer umatlas    592395 Jan  9 03:30 input.tar.gz
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas 220773057 Jan  9 05:10 HITS.pool.root.1
[2026-01-09 05:12:12] -rw------- 1 boincer umatlas   1269760 Jan  9 05:12 result.tar.gz
05:12:14 (6788): run_atlas exited; CPU time 63861.004896
05:12:14 (6788): called boinc_finish(0)

</stderr_txt>
]]>

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