Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:56:13 (1447975): wrapper (7.7.26015): starting
18:56:13 (1447975): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 18:56:13] Arguments: --nthreads 4
[2026-01-09 18:56:13] Threads: 4
[2026-01-09 18:56:13] Checking for CVMFS
[2026-01-09 18:56:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:56:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:56:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:56:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:56:14] 2.9.2.0 569242 3000 94404 154951 2 57 21101598 36864001 0 130560 0 2320005 99.990 111446 5955 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 18:56:14] CVMFS is ok
[2026-01-09 18:56:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:56:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:56:14] Further information can be found at the LHC@home message board.
[2026-01-09 18:56:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:56:14] Checking for apptainer binary...
[2026-01-09 18:56:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:56:14] Running /usr/bin/apptainer --version
[2026-01-09 18:56:14] apptainer version 1.4.1-1.1
[2026-01-09 18:56:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:56:14] thA369a
[2026-01-09 18:56:14] apptainer works
[2026-01-09 18:56:14] Set ATHENA_PROC_NUMBER=4
[2026-01-09 18:56:14] Set ATHENA_CORE_NUMBER=4
[2026-01-09 18:56:14] Starting ATLAS job with PandaID=6963155667
[2026-01-09 18:56:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:22:37]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:22:37] 2026-01-09 19:22:05,925 | INFO     | will attempt to kill all subprocesses of pid=1458305
[2026-01-09 20:22:37] 2026-01-09 19:22:05,969 | INFO     | process IDs to be killed: [1458305] (in reverse order)
[2026-01-09 20:22:37] 2026-01-09 19:22:05,994 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:22:37] 2026-01-09 19:22:05,994 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:22:37] 2026-01-09 19:22:05,995 | INFO     | did not find any defunct processes belonging to 1458305
[2026-01-09 20:22:37] 2026-01-09 19:22:05,997 | INFO     | did not find any defunct processes belonging to 1458305
[2026-01-09 20:22:37] 2026-01-09 19:22:05,997 | INFO     | ready for new job
[2026-01-09 20:22:37] 2026-01-09 19:22:05,997 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:22:37] 2026-01-09 19:22:05,997 | INFO     | ***************************************
[2026-01-09 20:22:37] 2026-01-09 19:22:05,997 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:22:37] 2026-01-09 19:22:05,997 | INFO     | ***************************************
[2026-01-09 20:22:37] 2026-01-09 19:22:05,998 | INFO     | 
[2026-01-09 20:22:37] 2026-01-09 19:22:05,998 | INFO     | architecture information:
[2026-01-09 20:22:37] 2026-01-09 19:22:05,998 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:22:37] 2026-01-09 19:22:06,007 | INFO     | cat /etc/os-release:
[2026-01-09 20:22:37] NAME="CentOS Linux"
[2026-01-09 20:22:37] VERSION="7 (Core)"
[2026-01-09 20:22:37] ID="centos"
[2026-01-09 20:22:37] ID_LIKE="rhel fedora"
[2026-01-09 20:22:37] VERSION_ID="7"
[2026-01-09 20:22:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:22:37] ANSI_COLOR="0;31"
[2026-01-09 20:22:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:22:37] HOME_URL="https://www.centos.org/"
[2026-01-09 20:22:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:22:37] 
[2026-01-09 20:22:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:22:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:22:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:22:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:22:37] 
[2026-01-09 20:22:37] 2026-01-09 19:22:06,007 | INFO     | ***************************************
[2026-01-09 20:22:37] 2026-01-09 19:22:06,510 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 20:22:37] 2026-01-09 19:22:06,523 | INFO     | sufficient remaining disk space (238806892544 B)
[2026-01-09 20:22:37] 2026-01-09 19:22:06,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:22:37] 2026-01-09 19:22:06,523 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:22:37] 2026-01-09 19:22:06,523 | INFO     | update_server=False
[2026-01-09 20:22:37] 2026-01-09 19:22:06,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:22:37] 2026-01-09 19:22:06,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:22:37] 2026-01-09 19:22:06,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:22:37] 2026-01-09 19:22:06,608 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 20:22:37] 2026-01-09 19:22:06,609 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 20:22:37] 2026-01-09 19:22:06,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:22:37] 2026-01-09 19:22:06,609 | INFO     | will abort loop
[2026-01-09 20:22:37] 2026-01-09 19:22:06,935 | INFO     | all data control threads have been joined
[2026-01-09 20:22:37] 2026-01-09 19:22:07,136 | INFO     | all job control threads have been joined
[2026-01-09 20:22:37] 2026-01-09 19:22:07,484 | INFO     | all payload control threads have been joined
[2026-01-09 20:22:37] 2026-01-09 19:22:07,529 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:07,529 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:07,600 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:07,614 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:07,718 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:22:37] 2026-01-09 19:22:07,882 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:07,940 | INFO     | [data] control thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:08,142 | INFO     | [job] control thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:08,302 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:08,408 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:08,490 | INFO     | [payload] control thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:08,751 | INFO     | [job] validate thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:08,853 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:08,873 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:09,723 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:10,531 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:16,906 | INFO     | job.realtimelogging is not enabled
[2026-01-09 20:22:37] 2026-01-09 19:22:17,911 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:22:37] 2026-01-09 19:22:25,612 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:22:37] 2026-01-09 19:22:26,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140159767709504)>', '<ExcThread(monitor, started 140159009945344)>']
[2026-01-09 20:22:37] 2026-01-09 19:22:32,024 | INFO     | all workflow threads have been joined
[2026-01-09 20:22:37] 2026-01-09 19:22:32,024 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:22:37] 2026-01-09 19:22:32,024 | INFO     | traces error code: 0
[2026-01-09 20:22:37] 2026-01-09 19:22:32,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:22:37] 2026-01-09 19:22:37,446 | INFO     | PID=1451762 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:22:37] 2026-01-09 19:22:37,447 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:22:37] 2026-01-09 19:22:37,447 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:22:37] 2026-01-09 19:22:37,447 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:22:37] 2026-01-09 19:22:37,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:22:37] 2026-01-09 19:22:37,447 | INFO     | [monitor] control thread has ended
[2026-01-09 20:22:37] 2026-01-09 19:22:37,496 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:22:37] 2026-01-09 19:22:37,498 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:22:37] 2026-01-09 19:22:37,500 [wrapper] pilotpid: 1451762
[2026-01-09 20:22:37] 2026-01-09 19:22:37,503 [wrapper] Pilot exit status: 0
[2026-01-09 20:22:37] 2026-01-09 19:22:37,510 [wrapper] pandaids: 6963155667
[2026-01-09 20:22:37] 2026-01-09 19:22:37,527 [wrapper] cleanup supervisor_pilot 1470233 1451763
[2026-01-09 20:22:37] 2026-01-09 19:22:37,529 [wrapper] Test setup, not cleaning
[2026-01-09 20:22:37] 2026-01-09 19:22:37,532 [wrapper] apfmon messages muted
[2026-01-09 20:22:37] 2026-01-09 19:22:37,534 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:22:37] 2026-01-09 19:22:37,536 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:22:37]  *** Error codes and diagnostics ***
[2026-01-09 20:22:37]     "exeErrorCode": 0,
[2026-01-09 20:22:37]     "exeErrorDiag": "",
[2026-01-09 20:22:37]     "pilotErrorCode": 0,
[2026-01-09 20:22:37]     "pilotErrorDiag": "",
[2026-01-09 20:22:37]  *** Listing of results directory ***
[2026-01-09 20:22:37] total 435292
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 20:22:37] -rwx------ 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc       100 Jan  9 18:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:22:37] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 18:56 run_atlas
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc       105 Jan  9 18:56 job.xml
[2026-01-09 20:22:37] -rw-r--r-- 2 boinc boinc 222530078 Jan  9 18:56 EVNT.47898824._001196.pool.root.1
[2026-01-09 20:22:37] -rw-r--r-- 2 boinc boinc    592399 Jan  9 18:56 input.tar.gz
[2026-01-09 20:22:37] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:56 start_atlas.sh
[2026-01-09 20:22:37] drwxrwx--x 2 boinc boinc      4096 Jan  9 18:56 shared
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:56 boinc_setup_complete
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc      6443 Jan  9 18:56 init_data.xml
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:56 boinc_lockfile
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc      2520 Jan  9 18:56 pandaJob.out
[2026-01-09 20:22:37] -rw------- 1 boinc boinc    989356 Jan  9 18:56 agis_schedconf.cvmfs.json
[2026-01-09 20:22:37] -rw------- 1 boinc boinc   1516240 Jan  9 18:56 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:22:37] drwx------ 5 boinc boinc      4096 Jan  9 18:56 pilot3
[2026-01-09 20:22:37] -rw------- 1 boinc boinc 217253583 Jan  9 20:21 HITS.47898826._030889.pool.root.1
[2026-01-09 20:22:37] -rw------- 1 boinc boinc        95 Jan  9 20:21 pilot_heartbeat.json
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc       529 Jan  9 20:21 boinc_task_state.xml
[2026-01-09 20:22:37] -rw------- 1 boinc boinc      1014 Jan  9 20:21 memory_monitor_summary.json
[2026-01-09 20:22:37] -rw------- 1 boinc boinc    274640 Jan  9 20:21 log.47898826._030889.job.log.tgz.1
[2026-01-09 20:22:37] -rw------- 1 boinc boinc      7745 Jan  9 20:22 heartbeat.json
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc        27 Jan  9 20:22 wrapper_checkpoint.txt
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc      8192 Jan  9 20:22 boinc_mmap_file
[2026-01-09 20:22:37] -rw------- 1 boinc boinc       747 Jan  9 20:22 pilotlog.txt
[2026-01-09 20:22:37] -rw------- 1 boinc boinc    753745 Jan  9 20:22 log.47898826._030889.job.log.1
[2026-01-09 20:22:37] -rw------- 1 boinc boinc       357 Jan  9 20:22 output.list
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc       620 Jan  9 20:22 runtime_log
[2026-01-09 20:22:37] -rw------- 1 boinc boinc   1044480 Jan  9 20:22 result.tar.gz
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc      8902 Jan  9 20:22 runtime_log.err
[2026-01-09 20:22:37] -rw------- 1 boinc boinc       659 Jan  9 20:22 Hu2KDmYZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVJlKDmkJgq9n.diag
[2026-01-09 20:22:37] -rw-r--r-- 1 boinc boinc     10520 Jan  9 20:22 stderr.txt
[2026-01-09 20:22:37] HITS file was successfully produced:
[2026-01-09 20:22:37] -rw------- 1 boinc boinc 217253583 Jan  9 20:21 shared/HITS.pool.root.1
[2026-01-09 20:22:37]  *** Contents of shared directory: ***
[2026-01-09 20:22:37] total 431104
[2026-01-09 20:22:37] -rw-r--r-- 2 boinc boinc 222530078 Jan  9 18:56 ATLAS.root_0
[2026-01-09 20:22:37] -rw-r--r-- 2 boinc boinc    592399 Jan  9 18:56 input.tar.gz
[2026-01-09 20:22:37] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:56 start_atlas.sh
[2026-01-09 20:22:37] -rw------- 1 boinc boinc 217253583 Jan  9 20:21 HITS.pool.root.1
[2026-01-09 20:22:37] -rw------- 1 boinc boinc   1044480 Jan  9 20:22 result.tar.gz
20:22:39 (1447975): run_atlas exited; CPU time 19517.464320
20:22:39 (1447975): called boinc_finish(0)

</stderr_txt>
]]>

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