Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-11 02:34:42 (10237): vboxwrapper version 26210
2026-01-11 02:34:42 (10237): BOINC client version: 8.2.8
2026-01-11 02:34:42 (10237): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2026-01-11 02:34:42 (10237): Successfully copied 'init_data.xml' to the shared directory.
2026-01-11 02:34:42 (10237): Create VM. (boinc_1a270cb8a72be536, slot#1)
2026-01-11 02:34:42 (10237): Setting Memory Size for VM. (4400MB)
2026-01-11 02:34:42 (10237): Setting CPU Count for VM. (4)
2026-01-11 02:34:42 (10237): Setting Chipset Options for VM.
2026-01-11 02:34:42 (10237): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-11 02:34:43 (10237): Setting Boot Options for VM.
2026-01-11 02:34:43 (10237): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-11 02:34:43 (10237): Enabling VM Network Access.
2026-01-11 02:34:43 (10237): Disabling USB Support for VM.
2026-01-11 02:34:43 (10237): Disabling COM Port Support for VM.
2026-01-11 02:34:43 (10237): Disabling LPT Port Support for VM.
2026-01-11 02:34:43 (10237): Disabling Audio Support for VM.
2026-01-11 02:34:43 (10237): Disabling Clipboard Support for VM.
2026-01-11 02:34:43 (10237): Disabling Drag and Drop Support for VM.
2026-01-11 02:34:43 (10237): Adding storage controller(s) to VM.
2026-01-11 02:34:43 (10237): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-11 02:34:44 (10237): Adding VirtualBox Guest Additions to VM.
2026-01-11 02:34:44 (10237): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-11 02:34:44 (10237): forwarding host port 35901 to guest port 80
2026-01-11 02:34:44 (10237): Enabling remote desktop for VM.
2026-01-11 02:34:44 (10237): Required extension pack not installed, remote desktop not enabled.
2026-01-11 02:34:44 (10237): Enabling shared directory for VM.
2026-01-11 02:34:44 (10237): Starting VM using VBoxManage interface. (boinc_1a270cb8a72be536, slot#1)
2026-01-11 02:34:45 (10237): Successfully started VM. (PID = '10657')
2026-01-11 02:34:45 (10237): Reporting VM Process ID to BOINC.
2026-01-11 02:34:45 (10237): Guest Log: BIOS: VirtualBox 6.1.50
2026-01-11 02:34:45 (10237): Guest Log: CPUID EDX: 0x178bfbff
2026-01-11 02:34:45 (10237): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-11 02:34:45 (10237): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-11 02:34:45 (10237): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-11 02:34:45 (10237): Detected: Web Application Enabled (http://localhost:35901)
2026-01-11 02:34:45 (10237): Preference change detected
2026-01-11 02:34:45 (10237): Setting CPU throttle for VM. (100%)
2026-01-11 02:34:45 (10237): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-11 02:34:47 (10237): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-11 02:34:47 (10237): Guest Log: BIOS: Booting from Hard Disk...
2026-01-11 02:34:50 (10237): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-11 02:34:50 (10237): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-11 02:34:50 (10237): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-11 02:34:56 (10237): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-11 02:34:56 (10237): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-01-11 02:35:04 (10237): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.000212 main     Log opened 2026-01-11T10:35:03.199727000Z
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.000358 main     OS Product: Linux
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.000398 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.000425 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.000450 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.000451 main     Process ID: 1322
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.000452 main     Package type: LINUX_64BITS_GENERIC
2026-01-11 02:35:04 (10237): Guest Log: 00:00:00.002825 main     5.2.32 r132073 started. Verbose level = 0
2026-01-11 02:35:05 (10237): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-11 02:35:05 (10237): Guest Log: [INFO] Mounting shared directory
2026-01-11 02:35:05 (10237): Guest Log: [INFO] Checking for init_data.xml
2026-01-11 02:35:21 (10237): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-11 02:35:21 (10237): Guest Log: [INFO] Detected branch: prod
2026-01-11 02:35:21 (10237): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-11 02:35:21 (10237): Guest Log: Copying input files
2026-01-11 02:35:22 (10237): Guest Log: Copied input files into RunAtlas.
2026-01-11 02:35:22 (10237): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-11 02:35:23 (10237): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-11 02:35:23 (10237): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-11 02:35:23 (10237): Guest Log: Further information can be found at the LHC@home message board.
2026-01-11 02:36:27 (10237): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-11 02:36:27 (10237): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-11 02:36:27 (10237): Guest Log: 2.6.3.0 1600 1 30152 155013 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-01-11 02:36:28 (10237): Guest Log: copied the webapp to /var/www
2026-01-11 02:36:28 (10237): Guest Log: ATHENA_PROC_NUMBER=4
2026-01-11 02:36:28 (10237): Guest Log: ATHENA_CORE_NUMBER=4
2026-01-11 02:36:28 (10237): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-11 02:36:28 (10237): Guest Log:  *** Starting ATLAS job. (PandaID=6963156241 taskID=47898826) ***
2026-01-11 04:13:46 (10237): Status Report: Elapsed Time: '6000.000000'
2026-01-11 04:13:46 (10237): Status Report: CPU Time: '21494.530000'
2026-01-11 05:52:46 (10237): Status Report: Elapsed Time: '12000.000000'
2026-01-11 05:52:46 (10237): Status Report: CPU Time: '31603.980000'
2026-01-11 07:31:47 (10237): Status Report: Elapsed Time: '18000.000000'
2026-01-11 07:31:47 (10237): Status Report: CPU Time: '41948.860000'
2026-01-11 09:10:47 (10237): Status Report: Elapsed Time: '24000.000000'
2026-01-11 09:10:47 (10237): Status Report: CPU Time: '52515.060000'
2026-01-11 10:49:48 (10237): Status Report: Elapsed Time: '30000.000000'
2026-01-11 10:49:48 (10237): Status Report: CPU Time: '63210.270000'
2026-01-11 12:28:49 (10237): Status Report: Elapsed Time: '36000.000000'
2026-01-11 12:28:49 (10237): Status Report: CPU Time: '73721.540000'
2026-01-11 12:48:52 (10237): VM state change detected. (old = 'running', new = 'paused')
2026-01-12 13:02:16 (10237): VM state change detected. (old = 'paused', new = 'running')
2026-01-12 13:02:18 (10237): Guest Log: 10:13:50.941117 timesync vgsvcTimeSyncWorker: Radical host time change: 87 214 748 000 000ns (HostNow=1 768 251 738 892 000 000 ns HostLast=1 768 164 524 144 000 000 ns)
2026-01-12 13:02:26 (10237): VM state change detected. (old = 'running', new = 'paused')
2026-01-12 20:08:13 (10237): VM state change detected. (old = 'paused', new = 'running')
2026-01-12 20:08:15 (10237): Guest Log: 10:14:00.954845 timesync vgsvcTimeSyncWorker: Radical host time change: 25 556 684 000 000ns (HostNow=1 768 277 295 576 000 000 ns HostLast=1 768 251 738 892 000 000 ns)
2026-01-12 20:08:15 (10237): Guest Log: 10:14:00.954952 timesync vgsvcTimeSyncWorker: Radical guest time change: 87 214 774 460 000ns (GuestNow=1 768 251 748 905 380 000 ns GuestLast=1 768 164 534 130 920 000 ns fSetTimeLastLoop=true )
2026-01-12 20:08:25 (10237): Guest Log: 10:14:10.955161 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 556 680 984 000ns (GuestNow=1 768 277 305 586 364 000 ns GuestLast=1 768 251 748 905 380 000 ns fSetTimeLastLoop=true )
2026-01-12 20:09:53 (10237): Guest Log:  *** Job finished ***
2026-01-12 20:09:53 (10237): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:48,815 | INFO     | end of generic workflow (traces error code: 0)
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:48,815 | INFO     | traces error code: 0
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:48,815 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,319 | INFO     | PID=6014 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,319 | INFO     | found 0 job(s) in 20 queues
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,319 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,320 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,320 | CRITICAL | thread 'MainThread' is not alive
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,320 | INFO     | [monitor] control thread has ended
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,553 [wrapper] ==== pilot stdout END ====
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,562 [wrapper] ==== wrapper stdout RESUME ====
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,587 [wrapper] pilotpid: 6014
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,597 [wrapper] Pilot exit status: 0
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,662 [wrapper] pandaids: 6963156241
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,717 [wrapper] cleanup supervisor_pilot 12521 6015
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,727 [wrapper] Test setup, not cleaning
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,752 [wrapper] apfmon messages muted
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,766 [wrapper] ==== wrapper stdout END ====
2026-01-12 20:09:53 (10237): Guest Log: 2026-01-13 04:09:51,783 [wrapper] ==== wrapper stderr END ====
2026-01-12 20:09:53 (10237): Guest Log:  *** Error codes and diagnostics ***
2026-01-12 20:09:53 (10237): Guest Log:     "exeErrorCode": 0,
2026-01-12 20:09:53 (10237): Guest Log:     "exeErrorDiag": "",
2026-01-12 20:09:53 (10237): Guest Log:     "pilotErrorCode": 0,
2026-01-12 20:09:53 (10237): Guest Log:     "pilotErrorDiag": "",
2026-01-12 20:09:53 (10237): Guest Log:  *** Listing of results directory ***
2026-01-12 20:09:53 (10237): Guest Log: total 231548
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Jan  8 19:06 pilot3.tar.gz
2026-01-12 20:09:53 (10237): Guest Log: -rwx------. 1 atlas atlas     36322 Jan  8 19:10 runpilot2-wrapper.sh
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jan  8 19:11 queuedata.json
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas    592399 Jan 11 10:35 input.tar.gz
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas     15847 Jan 11 10:35 start_atlas.sh
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas      6086 Jan 11 10:35 init_data.xml
2026-01-12 20:09:53 (10237): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 11 10:35 EVNT.47898824._000896.pool.root.1 -> /data/./ATLAS.root_0
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Jan 11 10:36 pandaJob.out
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas    989548 Jan 11 10:37 agis_schedconf.cvmfs.json
2026-01-12 20:09:53 (10237): Guest Log: drwx------. 5 atlas atlas      4096 Jan 11 10:37 pilot3
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas 222902863 Jan 13 04:08 HITS.47898826._031418.pool.root.1
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas      1029 Jan 13 04:08 memory_monitor_summary.json
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas   1516240 Jan 13 04:09 agis_ddmendpoints.agis.ALL.json
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas    684724 Jan 13 04:09 log.47898826._031418.job.log.tgz.1
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas        98 Jan 13 04:09 pilot_heartbeat.json
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas      7824 Jan 13 04:09 heartbeat.json
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas       814 Jan 13 04:09 pilotlog.txt
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas   4500698 Jan 13 04:09 log.47898826._031418.job.log.1
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas       357 Jan 13 04:09 output.list
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 13 04:09 runtime_log
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas   5201920 Jan 13 04:09 result.tar.gz
2026-01-12 20:09:53 (10237): Guest Log: -rw-r--r--. 1 atlas atlas      8733 Jan 13 04:09 runtime_log.err
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas       656 Jan 13 04:09 9HQODmjZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdLlKDm3Xlg4n.diag
2026-01-12 20:09:53 (10237): Guest Log: Looking for outputfile HITS.47898826._031418.pool.root.1
2026-01-12 20:09:53 (10237): Guest Log: HITS file was successfully produced
2026-01-12 20:09:53 (10237): Guest Log: -rw-------. 1 atlas atlas 222902863 Jan 13 04:08 /home/atlas/RunAtlas/HITS.47898826._031418.pool.root.1
2026-01-12 20:09:54 (10237): Guest Log: Successfully finished the ATLAS job!
2026-01-12 20:09:54 (10237): Guest Log: Copying the results back to the shared directory!
2026-01-12 20:09:55 (10237): Guest Log:  *** Contents of shared directory: ***
2026-01-12 20:09:55 (10237): Guest Log: total 226776
2026-01-12 20:09:55 (10237): Guest Log: -rw-r--r--. 1 root root 226390162 Jan 11 10:34 ATLAS.root_0
2026-01-12 20:09:55 (10237): Guest Log: -rw-r--r--. 1 root root      6086 Jan 11 10:34 init_data.xml
2026-01-12 20:09:55 (10237): Guest Log: -rw-r--r--. 1 root root    592399 Jan 11 10:34 input.tar.gz
2026-01-12 20:09:55 (10237): Guest Log: -rw-r--r--. 1 root root   5201920 Jan 13 04:09 result.tar.gz
2026-01-12 20:09:55 (10237): Guest Log: -rw-r--r--. 1 root root     15847 Jan 11 10:34 start_atlas.sh
2026-01-12 20:09:55 (10237): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-12 20:09:55 (10237): VM Completion File Detected.
2026-01-12 20:09:55 (10237): Powering off VM.
2026-01-12 20:09:56 (10237): Successfully stopped VM.
2026-01-12 20:09:56 (10237): Deregistering VM. (boinc_1a270cb8a72be536, slot#1)
2026-01-12 20:09:56 (10237): Removing network bandwidth throttle group from VM.
2026-01-12 20:09:56 (10237): Removing VM from VirtualBox.
2026-01-12 20:10:01 (10237): called boinc_finish(0)

</stderr_txt>
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