Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
09:05:43 (3206123): wrapper (7.7.26015): starting
09:05:43 (3206123): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 09:05:43] Arguments: --nthreads 12
[2026-01-09 09:05:43] Threads: 12
[2026-01-09 09:05:43] Checking for CVMFS
[2026-01-09 09:05:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:05:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:05:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:05:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:05:43] 2.13.0.0 3158504 119 54168 154936 0 57 5185543 6144000 0 130560 0 140638 99.993 5374 524 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-09 09:05:43] CVMFS is ok
[2026-01-09 09:05:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:05:43] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-09 09:05:43] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-09 09:05:43] Further information can be found at the LHC@home message board.
[2026-01-09 09:05:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:05:43] Checking for apptainer binary...
[2026-01-09 09:05:43] apptainer is not installed, using version from CVMFS
[2026-01-09 09:05:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:05:43] Debian-bookworm-latest-amd64-base
[2026-01-09 09:05:43] apptainer works
[2026-01-09 09:05:43] Set ATHENA_PROC_NUMBER=12
[2026-01-09 09:05:43] Set ATHENA_CORE_NUMBER=12
[2026-01-09 09:05:43] Starting ATLAS job with PandaID=6963153390
[2026-01-09 09:05:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 10:04:17]  *** The last 200 lines of the pilot log: ***
[2026-01-09 10:04:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 10:04:17]  replicas=None
[2026-01-09 10:04:17]  scope=mc23_13p6TeV
[2026-01-09 10:04:17]  status=None
[2026-01-09 10:04:17]  status_code=0
[2026-01-09 10:04:17]  storage_token=
[2026-01-09 10:04:17]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6963153390/log.47898826._030063.job.log.tgz.1
[2026-01-09 10:04:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/82/log.47898826._030063.job.log.tgz.1
[2026-01-09 10:04:17]  workdir=None
[2026-01-09 10:04:17] ]
[2026-01-09 10:04:17] 2026-01-09 09:03:37,499 | INFO     | transferring file log.47898826._030063.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6963153390/log.47898826._030063.job.log.tgz.1 to /var/lib/boinc
[2026-01-09 10:04:17] 2026-01-09 09:03:37,499 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6963153390/log.47898826._030063.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.478988
[2026-01-09 10:04:17] 2026-01-09 09:03:37,522 | INFO     | adding to output.list: log.47898826._030063.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/be/82/log.47898826._030063.job.log.tg
[2026-01-09 10:04:17] 2026-01-09 09:03:37,522 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 10:04:17] 2026-01-09 09:03:37,522 | INFO     | summary of transferred files:
[2026-01-09 10:04:17] 2026-01-09 09:03:37,522 | INFO     |  -- lfn=log.47898826._030063.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 10:04:17] 2026-01-09 09:03:37,523 | INFO     | stage-out finished correctly
[2026-01-09 10:04:17] 2026-01-09 09:03:37,561 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 10:04:17] 2026-01-09 09:03:37,673 | INFO     | monitor loop #264: job 0:6963153390 is in state 'finished'
[2026-01-09 10:04:17] 2026-01-09 09:03:37,673 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:04:17] 2026-01-09 09:03:38,714 | INFO     | time since job start (3468s) is within the limit (349056.0s)
[2026-01-09 10:04:17] 2026-01-09 09:03:39,429 | INFO     | job 6963153390 has state=finished
[2026-01-09 10:04:17] 2026-01-09 09:03:39,430 | INFO     | preparing for final server update for job 6963153390 in state='finished'
[2026-01-09 10:04:17] 2026-01-09 09:03:39,430 | INFO     | this job has now completed (state=finished)
[2026-01-09 10:04:17] 2026-01-09 09:03:39,430 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 10:04:17] 2026-01-09 09:03:39,430 | INFO     | log transfer has been attempted: DONE
[2026-01-09 10:04:17] 2026-01-09 09:03:39,430 | INFO     | job 6963153390 has finished - writing final server update
[2026-01-09 10:04:17] 2026-01-09 09:03:39,430 | INFO     | total number of processed events: 400 (read)
[2026-01-09 10:04:17] 2026-01-09 09:03:39,434 | INFO     | executing command: lscpu
[2026-01-09 10:04:17] 2026-01-09 09:03:39,451 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 10:04:17] 2026-01-09 09:03:40,176 | INFO     | monitor loop #265: job 0:6963153390 is in state 'finished'
[2026-01-09 10:04:17] 2026-01-09 09:03:40,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:04:17] 2026-01-09 09:03:40,719 | INFO     | time since job start (3470s) is within the limit (349056.0s)
[2026-01-09 10:04:17] 2026-01-09 09:03:42,679 | INFO     | monitor loop #266: job 0:6963153390 is in state 'finished'
[2026-01-09 10:04:17] 2026-01-09 09:03:42,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:04:17] 2026-01-09 09:03:42,722 | INFO     | time since job start (3472s) is within the limit (349056.0s)
[2026-01-09 10:04:17] 2026-01-09 09:03:44,727 | INFO     | time since job start (3474s) is within the limit (349056.0s)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,181 | INFO     | monitor loop #267: job 0:6963153390 is in state 'finished'
[2026-01-09 10:04:17] 2026-01-09 09:03:45,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,236 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 10:04:17] 2026-01-09 09:03:45,238 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3732.864875
[2026-01-09 10:04:17] 2026-01-09 09:03:45,239 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6963153390/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,240 | INFO     | extracted standard info from prmon json
[2026-01-09 10:04:17] 2026-01-09 09:03:45,240 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 10:04:17] 2026-01-09 09:03:45,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 10:04:17] 2026-01-09 09:03:45,240 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 10:04:17] 2026-01-09 09:03:45,240 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | fitting pss+swap vs Time
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | sum of square deviations: 38744912.5
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | sum of deviations: -3009955696.0
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | mean x: 1767947774.5
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | mean y: 2806883.88
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | intersect: 137348438367.41475
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | chi2: 0.07905408202348388
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | current memory leak: -77.69 B/s (using 50 data points, chi2=0.08)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | could have reported an average CPU frequency of 3954 MHz (5 samples)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | ..............................
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | . Timing measurements:
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | . get job = 0 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | . initial setup = 1 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | . payload setup = 3 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | . stage-in = 0 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,241 | INFO     | . payload execution = 3443 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,242 | INFO     | . stage-out = 0 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,242 | INFO     | . log creation = 0 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,242 | INFO     | ..............................
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | 
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | job summary report
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | --------------------------------------------------
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | PanDA job id: 6963153390
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | task id: 47898826
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | errors: (none)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | pilot state: finished 
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | transexitcode: 0
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | exeerrorcode: 0
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | exeerrordiag: 
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | exitcode: 0
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | exitmsg: OK
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | cpuconsumptiontime: 38194 s
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | nevents: 400
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | neventsw: 0
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | pid: 3216582
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | pgrp: 3216582
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | corecount: 12
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | event service: False
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | sizes: {0: 2283807, 1: 2284006, 4: 2284268, 11: 2284296, 3451: 2310061, 3452: 2310060, 3453: 2319312, 3461: 2319482}
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | --------------------------------------------------
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | 
[2026-01-09 10:04:17] 2026-01-09 09:03:45,286 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2026-01-09 10:04:17] 2026-01-09 09:03:45,297 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | job 6963153390 has completed (purged errors)
[2026-01-09 10:04:17] 2026-01-09 09:03:45,298 | INFO     | overall cleanup function is called
[2026-01-09 10:04:17] 2026-01-09 09:03:46,301 | INFO     | --- collectZombieJob: --- 10, [3216582]
[2026-01-09 10:04:17] 2026-01-09 09:03:46,302 | INFO     | zombie collector waiting for pid 3216582
[2026-01-09 10:04:17] 2026-01-09 09:03:46,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 10:04:17] 2026-01-09 09:03:46,302 | INFO     | collected zombie processes
[2026-01-09 10:04:17] 2026-01-09 09:03:46,302 | INFO     | will attempt to kill all subprocesses of pid=3216582
[2026-01-09 10:04:17] 2026-01-09 09:03:46,366 | INFO     | process IDs to be killed: [3216582] (in reverse order)
[2026-01-09 10:04:17] 2026-01-09 09:03:46,389 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 10:04:17] 2026-01-09 09:03:46,389 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 10:04:17] 2026-01-09 09:03:46,390 | INFO     | did not find any defunct processes belonging to 3216582
[2026-01-09 10:04:17] 2026-01-09 09:03:46,391 | INFO     | did not find any defunct processes belonging to 3216582
[2026-01-09 10:04:17] 2026-01-09 09:03:46,391 | INFO     | ready for new job
[2026-01-09 10:04:17] 2026-01-09 09:03:46,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 10:04:17] 2026-01-09 09:03:46,392 | INFO     | ***************************************
[2026-01-09 10:04:17] 2026-01-09 09:03:46,392 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 10:04:17] 2026-01-09 09:03:46,392 | INFO     | ***************************************
[2026-01-09 10:04:17] 2026-01-09 09:03:46,392 | INFO     | 
[2026-01-09 10:04:17] 2026-01-09 09:03:46,393 | INFO     | architecture information:
[2026-01-09 10:04:17] 2026-01-09 09:03:46,393 | INFO     | executing command: cat /etc/os-release
[2026-01-09 10:04:17] 2026-01-09 09:03:46,403 | INFO     | cat /etc/os-release:
[2026-01-09 10:04:17] NAME="CentOS Linux"
[2026-01-09 10:04:17] VERSION="7 (Core)"
[2026-01-09 10:04:17] ID="centos"
[2026-01-09 10:04:17] ID_LIKE="rhel fedora"
[2026-01-09 10:04:17] VERSION_ID="7"
[2026-01-09 10:04:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 10:04:17] ANSI_COLOR="0;31"
[2026-01-09 10:04:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 10:04:17] HOME_URL="https://www.centos.org/"
[2026-01-09 10:04:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 10:04:17] 
[2026-01-09 10:04:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 10:04:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 10:04:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 10:04:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 10:04:17] 
[2026-01-09 10:04:17] 2026-01-09 09:03:46,403 | INFO     | ***************************************
[2026-01-09 10:04:17] 2026-01-09 09:03:46,906 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2026-01-09 10:04:17] 2026-01-09 09:03:46,920 | INFO     | sufficient remaining disk space (710133415936 B)
[2026-01-09 10:04:17] 2026-01-09 09:03:46,920 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 10:04:17] 2026-01-09 09:03:46,920 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 10:04:17] 2026-01-09 09:03:46,920 | INFO     | update_server=False
[2026-01-09 10:04:17] 2026-01-09 09:03:46,921 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 10:04:17] 2026-01-09 09:03:46,921 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:04:17] 2026-01-09 09:03:46,921 | INFO     | aborting loop
[2026-01-09 10:04:17] 2026-01-09 09:03:46,921 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:04:17] 2026-01-09 09:03:47,041 | INFO     | all job control threads have been joined
[2026-01-09 10:04:17] 2026-01-09 09:03:47,926 | INFO     | [job] retrieve thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:47,926 | INFO     | [job] job monitor thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:47,926 | INFO     | [job] queue monitor thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:47,950 | INFO     | all data control threads have been joined
[2026-01-09 10:04:17] 2026-01-09 09:03:48,047 | INFO     | [job] control thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:48,075 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 10:04:17] 2026-01-09 09:03:48,110 | INFO     | [payload] failed_post thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:48,117 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 10:04:17] 2026-01-09 09:03:48,165 | INFO     | all payload control threads have been joined
[2026-01-09 10:04:17] 2026-01-09 09:03:48,431 | INFO     | [payload] validate_post thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:48,765 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:48,833 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:48,907 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:48,953 | INFO     | [data] control thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:49,169 | INFO     | [payload] control thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:49,181 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:49,294 | INFO     | [job] validate thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:49,409 | INFO     | [data] copytool_in thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:50,080 | INFO     | [data] copytool_out thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:52,121 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 10:04:17] 2026-01-09 09:03:55,978 | INFO     | [monitor] cgroup control has ended
[2026-01-09 10:04:17] 2026-01-09 09:03:56,983 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139886083520320)>', '<ExcThread(monitor, started 139885390321408)>']
[2026-01-09 10:04:17] 2026-01-09 09:04:01,990 | INFO     | all workflow threads have been joined
[2026-01-09 10:04:17] 2026-01-09 09:04:01,990 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 10:04:17] 2026-01-09 09:04:01,990 | INFO     | traces error code: 0
[2026-01-09 10:04:17] 2026-01-09 09:04:01,990 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 10:04:17] 2026-01-09 09:04:17,830 | INFO     | PID=3209885 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 10:04:17] 2026-01-09 09:04:17,843 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 10:04:17] 2026-01-09 09:04:17,843 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 10:04:17] 2026-01-09 09:04:17,843 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 10:04:17] 2026-01-09 09:04:17,843 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 10:04:17] 2026-01-09 09:04:17,843 | INFO     | [monitor] control thread has ended
[2026-01-09 10:04:17] 2026-01-09 09:04:17,908 [wrapper] ==== pilot stdout END ====
[2026-01-09 10:04:17] 2026-01-09 09:04:17,910 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 10:04:17] 2026-01-09 09:04:17,911 [wrapper] pilotpid: 3209885
[2026-01-09 10:04:17] 2026-01-09 09:04:17,912 [wrapper] Pilot exit status: 0
[2026-01-09 10:04:17] 2026-01-09 09:04:17,917 [wrapper] pandaids: 6963153390
[2026-01-09 10:04:17] 2026-01-09 09:04:17,930 [wrapper] cleanup supervisor_pilot 3226878 3209886
[2026-01-09 10:04:17] 2026-01-09 09:04:17,931 [wrapper] Test setup, not cleaning
[2026-01-09 10:04:17] 2026-01-09 09:04:17,933 [wrapper] apfmon messages muted
[2026-01-09 10:04:17] 2026-01-09 09:04:17,934 [wrapper] ==== wrapper stdout END ====
[2026-01-09 10:04:17] 2026-01-09 09:04:17,935 [wrapper] ==== wrapper stderr END ====
[2026-01-09 10:04:17]  *** Error codes and diagnostics ***
[2026-01-09 10:04:17]     "exeErrorCode": 0,
[2026-01-09 10:04:17]     "exeErrorDiag": "",
[2026-01-09 10:04:17]     "pilotErrorCode": 0,
[2026-01-09 10:04:17]     "pilotErrorDiag": "",
[2026-01-09 10:04:17]  *** Listing of results directory ***
[2026-01-09 10:04:17] total 441436
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 10:04:17] -rwx------ 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc       100 Jan  9 09:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 10:04:17] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 09:05 run_atlas
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc       105 Jan  9 09:05 job.xml
[2026-01-09 10:04:17] -rw-r--r-- 2 boinc boinc     15847 Jan  9 09:05 start_atlas.sh
[2026-01-09 10:04:17] drwxrwx--x 2 boinc boinc      4096 Jan  9 09:05 shared
[2026-01-09 10:04:17] -rw-r--r-- 2 boinc boinc    592394 Jan  9 09:05 input.tar.gz
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc      6727 Jan  9 09:05 init_data.xml
[2026-01-09 10:04:17] -rw-r--r-- 2 boinc boinc 223108470 Jan  9 09:05 EVNT.47898824._001163.pool.root.1
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc         0 Jan  9 09:05 boinc_lockfile
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc      2520 Jan  9 09:05 pandaJob.out
[2026-01-09 10:04:17] -rw------- 1 boinc boinc    989771 Jan  9 09:05 agis_schedconf.cvmfs.json
[2026-01-09 10:04:17] -rw------- 1 boinc boinc   1516240 Jan  9 09:05 agis_ddmendpoints.agis.ALL.json
[2026-01-09 10:04:17] drwx------ 5 boinc boinc      4096 Jan  9 09:05 pilot3
[2026-01-09 10:04:17] -rw------- 1 boinc boinc 223222356 Jan  9 10:03 HITS.47898826._030063.pool.root.1
[2026-01-09 10:04:17] -rw------- 1 boinc boinc      1010 Jan  9 10:03 memory_monitor_summary.json
[2026-01-09 10:04:17] -rw------- 1 boinc boinc    371825 Jan  9 10:03 log.47898826._030063.job.log.tgz.1
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc       530 Jan  9 10:03 boinc_task_state.xml
[2026-01-09 10:04:17] -rw------- 1 boinc boinc      7774 Jan  9 10:03 heartbeat.json
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc        27 Jan  9 10:04 wrapper_checkpoint.txt
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc      8192 Jan  9 10:04 boinc_mmap_file
[2026-01-09 10:04:17] -rw------- 1 boinc boinc        95 Jan  9 10:04 pilot_heartbeat.json
[2026-01-09 10:04:17] -rw------- 1 boinc boinc       747 Jan  9 10:04 pilotlog.txt
[2026-01-09 10:04:17] -rw------- 1 boinc boinc    525239 Jan  9 10:04 log.47898826._030063.job.log.1
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc       620 Jan  9 10:04 runtime_log
[2026-01-09 10:04:17] -rw------- 1 boinc boinc    911360 Jan  9 10:04 result.tar.gz
[2026-01-09 10:04:17] -rw------- 1 boinc boinc       357 Jan  9 10:04 output.list
[2026-01-09 10:04:17] -rw------- 1 boinc boinc       705 Jan  9 10:04 z3zKDmBZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPHlKDmCMnURm.diag
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc      9132 Jan  9 10:04 runtime_log.err
[2026-01-09 10:04:17] -rw-r--r-- 1 boinc boinc     22096 Jan  9 10:04 stderr.txt
[2026-01-09 10:04:17] HITS file was successfully produced:
[2026-01-09 10:04:17] -rw------- 1 boinc boinc 223222356 Jan  9 10:03 shared/HITS.pool.root.1
[2026-01-09 10:04:17]  *** Contents of shared directory: ***
[2026-01-09 10:04:17] total 437368
[2026-01-09 10:04:17] -rw-r--r-- 2 boinc boinc     15847 Jan  9 09:05 start_atlas.sh
[2026-01-09 10:04:17] -rw-r--r-- 2 boinc boinc    592394 Jan  9 09:05 input.tar.gz
[2026-01-09 10:04:17] -rw-r--r-- 2 boinc boinc 223108470 Jan  9 09:05 ATLAS.root_0
[2026-01-09 10:04:17] -rw------- 1 boinc boinc 223222356 Jan  9 10:03 HITS.pool.root.1
[2026-01-09 10:04:17] -rw------- 1 boinc boinc    911360 Jan  9 10:04 result.tar.gz
10:04:18 (3206123): run_atlas exited; CPU time 38214.914561
10:04:19 (3206123): called boinc_finish(0)

</stderr_txt>
]]>

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