Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-09 03:35:07 (61407): vboxwrapper version 26210
2026-01-09 03:35:07 (61407): BOINC client version: 8.2.8
2026-01-09 03:35:08 (61407): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2026-01-09 03:35:08 (61407): Detected: Sandbox Configuration Enabled
2026-01-09 03:35:08 (61407): Successfully copied 'init_data.xml' to the shared directory.
2026-01-09 03:35:08 (61407): Create VM. (boinc_855487b7f4863692, slot#0)
2026-01-09 03:35:08 (61407): Setting Memory Size for VM. (4200MB)
2026-01-09 03:35:08 (61407): Setting CPU Count for VM. (2)
2026-01-09 03:35:08 (61407): Setting Chipset Options for VM.
2026-01-09 03:35:08 (61407): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-09 03:35:08 (61407): Setting Boot Options for VM.
2026-01-09 03:35:08 (61407): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-09 03:35:08 (61407): Enabling VM Network Access.
2026-01-09 03:35:08 (61407): Disabling USB Support for VM.
2026-01-09 03:35:09 (61407): Disabling COM Port Support for VM.
2026-01-09 03:35:09 (61407): Disabling Audio Support for VM.
2026-01-09 03:35:09 (61407): Disabling Clipboard Support for VM.
2026-01-09 03:35:09 (61407): Disabling Drag and Drop Support for VM.
2026-01-09 03:35:09 (61407): Adding storage controller(s) to VM.
2026-01-09 03:35:09 (61407): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-09 03:35:10 (61407): Adding VirtualBox Guest Additions to VM.
2026-01-09 03:35:10 (61407): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-09 03:35:10 (61407): forwarding host port 54673 to guest port 80
2026-01-09 03:35:10 (61407): Enabling remote desktop for VM.
2026-01-09 03:35:10 (61407): Enabling shared directory for VM.
2026-01-09 03:35:10 (61407): Starting VM using VBoxManage interface. (boinc_855487b7f4863692, slot#0)
2026-01-09 03:35:16 (61407): Successfully started VM. (PID = '61486')
2026-01-09 03:35:16 (61407): Reporting VM Process ID to BOINC.
2026-01-09 03:35:16 (61407): Guest Log: BIOS: VirtualBox 7.2.4
2026-01-09 03:35:16 (61407): Guest Log: CPUID EDX: 0x178bfbff
2026-01-09 03:35:16 (61407): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-09 03:35:16 (61407): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-09 03:35:16 (61407): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-09 03:35:16 (61407): Detected: Web Application Enabled (http://localhost:54673)
2026-01-09 03:35:16 (61407): Detected: Remote Desktop Enabled (localhost:54674)
2026-01-09 03:35:16 (61407): Preference change detected
2026-01-09 03:35:16 (61407): Setting CPU throttle for VM. (100%)
2026-01-09 03:35:16 (61407): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-09 03:35:18 (61407): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-09 03:35:18 (61407): Guest Log: BIOS: Booting from Hard Disk...
2026-01-09 03:35:26 (61407): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-09 03:35:26 (61407): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-09 03:35:26 (61407): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-09 03:35:40 (61407): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-09 03:35:40 (61407): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-09 03:35:59 (61407): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.000220 main     Log opened 2026-01-09T08:35:58.074402000Z
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.000414 main     OS Product: Linux
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.000484 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.000549 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.000614 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.000616 main     Process ID: 1277
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.000617 main     Package type: LINUX_64BITS_GENERIC
2026-01-09 03:35:59 (61407): Guest Log: 00:00:00.003574 main     5.2.32 r132073 started. Verbose level = 0
2026-01-09 03:35:59 (61407): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-09 03:35:59 (61407): Guest Log: [INFO] Mounting shared directory
2026-01-09 03:36:00 (61407): Guest Log: [INFO] Checking for init_data.xml
2026-01-09 03:36:11 (61407): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-09 03:36:11 (61407): Guest Log: [INFO] Detected branch: prod
2026-01-09 03:36:12 (61407): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-09 03:36:12 (61407): Guest Log: Copying input files
2026-01-09 03:36:16 (61407): Guest Log: Copied input files into RunAtlas.
2026-01-09 03:36:16 (61407): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-09 03:36:16 (61407): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-09 03:36:16 (61407): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-09 03:36:16 (61407): Guest Log: Further information can be found at the LHC@home message board.
2026-01-09 03:37:21 (61407): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-09 03:37:22 (61407): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-09 03:37:22 (61407): Guest Log: 2.6.3.0 1571 1 32096 154937 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-01-09 03:37:23 (61407): Guest Log: copied the webapp to /var/www
2026-01-09 03:37:23 (61407): Guest Log: ATHENA_PROC_NUMBER=2
2026-01-09 03:37:23 (61407): Guest Log: ATHENA_CORE_NUMBER=2
2026-01-09 03:37:25 (61407): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-09 03:37:25 (61407): Guest Log:  *** Starting ATLAS job. (PandaID=6963153995 taskID=47898826) ***
2026-01-09 05:15:16 (61407): Status Report: Elapsed Time: '6000.000000'
2026-01-09 05:15:16 (61407): Status Report: CPU Time: '8986.260000'
2026-01-09 06:55:16 (61407): Status Report: Elapsed Time: '12000.259853'
2026-01-09 06:55:16 (61407): Status Report: CPU Time: '20318.050000'
2026-01-09 08:35:15 (61407): Status Report: Elapsed Time: '18000.259853'
2026-01-09 08:35:15 (61407): Status Report: CPU Time: '31651.080000'
2026-01-09 10:15:15 (61407): Status Report: Elapsed Time: '24000.259853'
2026-01-09 10:15:15 (61407): Status Report: CPU Time: '43004.580000'
2026-01-09 11:55:15 (61407): Status Report: Elapsed Time: '30000.259853'
2026-01-09 11:55:15 (61407): Status Report: CPU Time: '54346.140000'
2026-01-09 13:35:15 (61407): Status Report: Elapsed Time: '36000.259853'
2026-01-09 13:35:15 (61407): Status Report: CPU Time: '65689.030000'
2026-01-09 15:15:14 (61407): Status Report: Elapsed Time: '42000.259853'
2026-01-09 15:15:14 (61407): Status Report: CPU Time: '77026.560000'
2026-01-09 16:55:13 (61407): Status Report: Elapsed Time: '48000.259853'
2026-01-09 16:55:13 (61407): Status Report: CPU Time: '88364.650000'
2026-01-09 18:35:12 (61407): Status Report: Elapsed Time: '54000.259853'
2026-01-09 18:35:12 (61407): Status Report: CPU Time: '99700.340000'
2026-01-09 20:15:11 (61407): Status Report: Elapsed Time: '60000.259853'
2026-01-09 20:15:11 (61407): Status Report: CPU Time: '111090.060000'
2026-01-09 20:23:36 (61407): Guest Log:  *** Job finished ***
2026-01-09 20:23:36 (61407): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:06,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:06,460 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:08,818 | INFO     | [monitor] cgroup control has ended
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:08,997 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510674892608)>', '<ExcThread(monitor, started 140509787977472)>']
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:09,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:09,501 | INFO     | [monitor] control thread has ended
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,001 | INFO     | all workflow threads have been joined
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,002 | INFO     | end of generic workflow (traces error code: 0)
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,002 | INFO     | traces error code: 0
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,002 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,373 [wrapper] ==== pilot stdout END ====
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,384 [wrapper] ==== wrapper stdout RESUME ====
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,398 [wrapper] pilotpid: 5995
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,414 [wrapper] Pilot exit status: 0
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,523 [wrapper] pandaids: 6963153995
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,576 [wrapper] cleanup supervisor_pilot 15499 5996
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,588 [wrapper] Test setup, not cleaning
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,597 [wrapper] apfmon messages muted
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,606 [wrapper] ==== wrapper stdout END ====
2026-01-09 20:23:36 (61407): Guest Log: 2026-01-10 01:22:14,619 [wrapper] ==== wrapper stderr END ====
2026-01-09 20:23:36 (61407): Guest Log:  *** Error codes and diagnostics ***
2026-01-09 20:23:36 (61407): Guest Log:     "exeErrorCode": 0,
2026-01-09 20:23:36 (61407): Guest Log:     "exeErrorDiag": "",
2026-01-09 20:23:36 (61407): Guest Log:     "pilotErrorCode": 0,
2026-01-09 20:23:36 (61407): Guest Log:     "pilotErrorDiag": "",
2026-01-09 20:23:36 (61407): Guest Log:  *** Listing of results directory ***
2026-01-09 20:23:36 (61407): Guest Log: total 230828
2026-01-09 20:23:36 (61407): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Jan  8 19:06 pilot3.tar.gz
2026-01-09 20:23:36 (61407): Guest Log: -rwx------. 1 atlas atlas     36322 Jan  8 19:09 runpilot2-wrapper.sh
2026-01-09 20:23:36 (61407): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jan  8 19:11 queuedata.json
2026-01-09 20:23:36 (61407): Guest Log: -rw-r-----. 1 atlas atlas     15847 Jan  9 08:36 start_atlas.sh
2026-01-09 20:23:36 (61407): Guest Log: -rw-r-----. 1 atlas atlas    592394 Jan  9 08:36 input.tar.gz
2026-01-09 20:23:36 (61407): Guest Log: -rw-r--r--. 1 atlas atlas      8260 Jan  9 08:36 init_data.xml
2026-01-09 20:23:36 (61407): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan  9 08:36 EVNT.47898824._001177.pool.root.1 -> /data/./ATLAS.root_0
2026-01-09 20:23:36 (61407): Guest Log: -rw-r--r--. 1 atlas atlas      2520 Jan  9 08:37 pandaJob.out
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas    989759 Jan  9 08:42 agis_schedconf.cvmfs.json
2026-01-09 20:23:36 (61407): Guest Log: drwx------. 5 atlas atlas      4096 Jan  9 08:43 pilot3
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas 215786162 Jan 10 01:19 HITS.47898826._030411.pool.root.1
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas      1030 Jan 10 01:21 memory_monitor_summary.json
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas   1516240 Jan 10 01:21 agis_ddmendpoints.agis.ALL.json
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas    942043 Jan 10 01:21 log.47898826._030411.job.log.tgz.1
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas        95 Jan 10 01:21 pilot_heartbeat.json
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas      7830 Jan 10 01:21 heartbeat.json
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas      4805 Jan 10 01:22 pilotlog.txt
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas   7422225 Jan 10 01:22 log.47898826._030411.job.log.1
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas       357 Jan 10 01:22 output.list
2026-01-09 20:23:36 (61407): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 10 01:22 runtime_log
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas   8386560 Jan 10 01:22 result.tar.gz
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas       665 Jan 10 01:22 TatMDmMZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwHlKDmDtL9in.diag
2026-01-09 20:23:36 (61407): Guest Log: -rw-r--r--. 1 atlas atlas      8762 Jan 10 01:22 runtime_log.err
2026-01-09 20:23:36 (61407): Guest Log: Looking for outputfile HITS.47898826._030411.pool.root.1
2026-01-09 20:23:36 (61407): Guest Log: HITS file was successfully produced
2026-01-09 20:23:36 (61407): Guest Log: -rw-------. 1 atlas atlas 215786162 Jan 10 01:19 /home/atlas/RunAtlas/HITS.47898826._030411.pool.root.1
2026-01-09 20:23:37 (61407): Guest Log: Successfully finished the ATLAS job!
2026-01-09 20:23:37 (61407): Guest Log: Copying the results back to the shared directory!
2026-01-09 20:23:37 (61407): Guest Log:  *** Contents of shared directory: ***
2026-01-09 20:23:37 (61407): Guest Log: total 229472
2026-01-09 20:23:37 (61407): Guest Log: -rw-rw----. 1 root root 225758411 Jan  9 08:35 ATLAS.root_0
2026-01-09 20:23:37 (61407): Guest Log: -rw-rw-r--. 1 root root      8260 Jan  9 08:35 init_data.xml
2026-01-09 20:23:37 (61407): Guest Log: -rw-rw----. 1 root root    592394 Jan  9 08:35 input.tar.gz
2026-01-09 20:23:37 (61407): Guest Log: -rw-r--r--. 1 root root   8386560 Jan 10  2026 result.tar.gz
2026-01-09 20:23:37 (61407): Guest Log: -rw-rw----. 1 root root     15847 Jan  9 08:35 start_atlas.sh
2026-01-09 20:23:37 (61407): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-09 20:23:37 (61407): VM Completion File Detected.
2026-01-09 20:23:37 (61407): Powering off VM.
2026-01-09 20:23:38 (61407): Successfully stopped VM.
2026-01-09 20:23:38 (61407): Deregistering VM. (boinc_855487b7f4863692, slot#0)
2026-01-09 20:23:39 (61407): Removing network bandwidth throttle group from VM.
2026-01-09 20:23:39 (61407): Removing VM from VirtualBox.
2026-01-09 20:23:44 (61407): called boinc_finish(0)

</stderr_txt>
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