Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
06:26:40 (3508871): wrapper (7.7.26015): starting
06:26:40 (3508871): wrapper: running run_atlas (--nthreads 3)
[2026-01-11 06:26:40] Arguments: --nthreads 3
[2026-01-11 06:26:40] Threads: 3
[2026-01-11 06:26:40] Checking for CVMFS
[2026-01-11 06:26:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 06:26:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 06:26:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 06:26:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 06:26:41] 2.12.7.0 3694947 5159 63052 155006 1 57 5164734 6144001 1834 130560 0 9229440 99.995 194181 2529 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.42:3128 1
[2026-01-11 06:26:41] CVMFS is ok
[2026-01-11 06:26:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 06:26:41] Checking for apptainer binary...
[2026-01-11 06:26:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 06:26:41] Running /usr/bin/apptainer --version
[2026-01-11 06:26:41] apptainer version 1.4.5
[2026-01-11 06:26:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 06:26:41] Ryzen8
[2026-01-11 06:26:41] apptainer works
[2026-01-11 06:26:41] Set ATHENA_PROC_NUMBER=3
[2026-01-11 06:26:41] Set ATHENA_CORE_NUMBER=3
[2026-01-11 06:26:41] Starting ATLAS job with PandaID=6963156170
[2026-01-11 06:26:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc2/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 08:53:07]  *** The last 200 lines of the pilot log: ***
[2026-01-11 08:53:07] 2026-01-11 07:52:08,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,375 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-11 08:53:07] 2026-01-11 07:52:08,377 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 4337.093250000001
[2026-01-11 08:53:07] 2026-01-11 07:52:08,378 | INFO     | using path: /var/lib/boinc2/slots/1/PanDA_Pilot-6963156170/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,378 | INFO     | extracted standard info from prmon json
[2026-01-11 08:53:07] 2026-01-11 07:52:08,378 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 08:53:07] 2026-01-11 07:52:08,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 08:53:07] 2026-01-11 07:52:08,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 08:53:07] 2026-01-11 07:52:08,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 08:53:07] 2026-01-11 07:52:08,380 | INFO     | fitting pss+swap vs Time
[2026-01-11 08:53:07] 2026-01-11 07:52:08,380 | INFO     | sum of square deviations: 906703512.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,380 | INFO     | sum of deviations: -5604487422.999998
[2026-01-11 08:53:07] 2026-01-11 07:52:08,380 | INFO     | mean x: 1768113556.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,380 | INFO     | mean y: 2336456.874125874
[2026-01-11 08:53:07] 2026-01-11 07:52:08,380 | INFO     | intersect: 10931344733.4383
[2026-01-11 08:53:07] 2026-01-11 07:52:08,380 | INFO     | chi2: 1.1203098565275338
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | sum of square deviations: 814878534.5
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | sum of deviations: -5474235007.500001
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | mean x: 1768113403.5
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | mean y: 2336673.297101449
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | intersect: 11880264340.895609
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | chi2: 1.1184687941466132
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | current chi2=1.1184687941466132 (change=0.16433510516698602 %)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | right removable region: 137
[2026-01-11 08:53:07] 2026-01-11 07:52:08,381 | INFO     | sum of square deviations: 814878534.5
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | sum of deviations: -12344443272.500002
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | mean x: 1768113708.5
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | mean y: 2347070.615942029
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | intersect: 26787172599.61367
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | chi2: 0.058877368829513575
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | current chi2=0.058877368829513575 (change=94.74454603014853 %)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | sum of square deviations: 729472282.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | sum of deviations: -6620071055.000007
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | mean x: 1768113861.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | mean y: 2336890.067669173
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | intersect: 16048237031.823027
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | chi2: 0.011714921034688354
[2026-01-11 08:53:07] 2026-01-11 07:52:08,382 | INFO     | current chi2=0.011714921034688354 (change=80.10284551164251 %)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | sum of square deviations: 650252192.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | sum of deviations: -5250310473.5
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | mean x: 1768114013.5
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | mean y: 2334260.5703125
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | intersect: 14278560681.074512
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | chi2: 0.010462508971104085
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | current chi2=0.010462508971104085 (change=10.690742685126317 %)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | left removable region: 30
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | sum of square deviations: 379832238.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | sum of deviations: -3031867201.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | mean x: 1768114288.0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,383 | INFO     | mean y: 2329071.5981308413
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | intersect: 14115632738.588789
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | chi2: 0.009160325257207728
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | current memory leak: -7.98 B/s (using 107 data points, chi2=0.01)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | could have reported an average CPU frequency of 4331 MHz (8 samples)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | ..............................
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . Timing measurements:
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . get job = 0 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . initial setup = 0 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . payload setup = 2 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . stage-in = 0 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . payload execution = 8698 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . stage-out = 0 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | . log creation = 0 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,384 | INFO     | ..............................
[2026-01-11 08:53:07] 2026-01-11 07:52:08,482 | INFO     | 
[2026-01-11 08:53:07] 2026-01-11 07:52:08,482 | INFO     | job summary report
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | --------------------------------------------------
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | PanDA job id: 6963156170
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | task id: 47898826
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | errors: (none)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | pilot state: finished 
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | transexitcode: 0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | exeerrorcode: 0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | exeerrordiag: 
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | exitcode: 0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | exitmsg: OK
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | cpuconsumptiontime: 25662 s
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | nevents: 400
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | neventsw: 0
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | pid: 3519035
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | pgrp: 3519035
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | corecount: 3
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | event service: False
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | sizes: {0: 2283798, 1: 2283997, 3: 2284259, 11: 2284287, 8704: 2312591, 8706: 2321775, 8709: 2321913}
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | --------------------------------------------------
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | 
[2026-01-11 08:53:07] 2026-01-11 07:52:08,483 | INFO     | executing command: ls -lF /var/lib/boinc2/slots/1
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | job 6963156170 has completed (purged errors)
[2026-01-11 08:53:07] 2026-01-11 07:52:08,495 | INFO     | overall cleanup function is called
[2026-01-11 08:53:07] 2026-01-11 07:52:09,499 | INFO     | --- collectZombieJob: --- 10, [3519035]
[2026-01-11 08:53:07] 2026-01-11 07:52:09,499 | INFO     | zombie collector waiting for pid 3519035
[2026-01-11 08:53:07] 2026-01-11 07:52:09,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 08:53:07] 2026-01-11 07:52:09,499 | INFO     | collected zombie processes
[2026-01-11 08:53:07] 2026-01-11 07:52:09,499 | INFO     | will attempt to kill all subprocesses of pid=3519035
[2026-01-11 08:53:07] 2026-01-11 07:52:09,553 | INFO     | process IDs to be killed: [3519035] (in reverse order)
[2026-01-11 08:53:07] 2026-01-11 07:52:09,577 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 08:53:07] 2026-01-11 07:52:09,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 08:53:07] 2026-01-11 07:52:09,579 | INFO     | did not find any defunct processes belonging to 3519035
[2026-01-11 08:53:07] 2026-01-11 07:52:09,581 | INFO     | did not find any defunct processes belonging to 3519035
[2026-01-11 08:53:07] 2026-01-11 07:52:09,581 | INFO     | ready for new job
[2026-01-11 08:53:07] 2026-01-11 07:52:09,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 08:53:07] 2026-01-11 07:52:09,582 | INFO     | ***************************************
[2026-01-11 08:53:07] 2026-01-11 07:52:09,582 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 08:53:07] 2026-01-11 07:52:09,582 | INFO     | ***************************************
[2026-01-11 08:53:07] 2026-01-11 07:52:09,582 | INFO     | 
[2026-01-11 08:53:07] 2026-01-11 07:52:09,582 | INFO     | architecture information:
[2026-01-11 08:53:07] 2026-01-11 07:52:09,583 | INFO     | executing command: cat /etc/os-release
[2026-01-11 08:53:07] 2026-01-11 07:52:09,591 | INFO     | cat /etc/os-release:
[2026-01-11 08:53:07] NAME="CentOS Linux"
[2026-01-11 08:53:07] VERSION="7 (Core)"
[2026-01-11 08:53:07] ID="centos"
[2026-01-11 08:53:07] ID_LIKE="rhel fedora"
[2026-01-11 08:53:07] VERSION_ID="7"
[2026-01-11 08:53:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 08:53:07] ANSI_COLOR="0;31"
[2026-01-11 08:53:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 08:53:07] HOME_URL="https://www.centos.org/"
[2026-01-11 08:53:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 08:53:07] 
[2026-01-11 08:53:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 08:53:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 08:53:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 08:53:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 08:53:07] 
[2026-01-11 08:53:07] 2026-01-11 07:52:09,591 | INFO     | ***************************************
[2026-01-11 08:53:07] 2026-01-11 07:52:10,094 | INFO     | executing command: df -mP /var/lib/boinc2/slots/1
[2026-01-11 08:53:07] 2026-01-11 07:52:10,103 | INFO     | sufficient remaining disk space (100305731584 B)
[2026-01-11 08:53:07] 2026-01-11 07:52:10,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 08:53:07] 2026-01-11 07:52:10,104 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 08:53:07] 2026-01-11 07:52:10,104 | INFO     | update_server=False
[2026-01-11 08:53:07] 2026-01-11 07:52:10,104 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 08:53:07] 2026-01-11 07:52:10,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 08:53:07] 2026-01-11 07:52:10,104 | INFO     | aborting loop
[2026-01-11 08:53:07] 2026-01-11 07:52:10,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 08:53:07] 2026-01-11 07:52:10,184 | INFO     | all data control threads have been joined
[2026-01-11 08:53:07] 2026-01-11 07:52:10,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 08:53:07] 2026-01-11 07:52:11,109 | INFO     | [job] queue monitor thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,109 | INFO     | [job] retrieve thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,109 | INFO     | [job] job monitor thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,117 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,189 | INFO     | [data] control thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,192 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 08:53:07] 2026-01-11 07:52:11,349 | INFO     | all job control threads have been joined
[2026-01-11 08:53:07] 2026-01-11 07:52:11,351 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,424 | INFO     | [payload] failed_post thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,548 | INFO     | all payload control threads have been joined
[2026-01-11 08:53:07] 2026-01-11 07:52:11,702 | INFO     | [data] copytool_in thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:11,834 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:12,321 | INFO     | [job] validate thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:12,349 | INFO     | [data] copytool_out thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:12,352 | INFO     | [job] control thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:12,376 | INFO     | [payload] validate_post thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:12,553 | INFO     | [payload] control thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:15,196 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:20,722 | INFO     | job.realtimelogging is not enabled
[2026-01-11 08:53:07] 2026-01-11 07:52:21,727 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 08:53:07] 2026-01-11 07:52:40,569 | INFO     | PID=3512589 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 08:53:07] 2026-01-11 07:52:40,569 | INFO     | .. there are 3 such processes running
[2026-01-11 08:53:07] 2026-01-11 07:52:40,570 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 08:53:07] 2026-01-11 07:52:40,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 08:53:07] 2026-01-11 07:52:40,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 08:53:07] 2026-01-11 07:53:00,322 | INFO     | [monitor] cgroup control has ended
[2026-01-11 08:53:07] 2026-01-11 07:53:02,165 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140371980048192)>', '<ExcThread(monitor, started 140371635971840)>']
[2026-01-11 08:53:07] 2026-01-11 07:53:02,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 08:53:07] 2026-01-11 07:53:02,663 | INFO     | [monitor] control thread has ended
[2026-01-11 08:53:07] 2026-01-11 07:53:07,189 | INFO     | all workflow threads have been joined
[2026-01-11 08:53:07] 2026-01-11 07:53:07,189 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 08:53:07] 2026-01-11 07:53:07,189 | INFO     | traces error code: 0
[2026-01-11 08:53:07] 2026-01-11 07:53:07,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 08:53:07] 2026-01-11 07:53:07,254 [wrapper] ==== pilot stdout END ====
[2026-01-11 08:53:07] 2026-01-11 07:53:07,256 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 08:53:07] 2026-01-11 07:53:07,257 [wrapper] pilotpid: 3512589
[2026-01-11 08:53:07] 2026-01-11 07:53:07,259 [wrapper] Pilot exit status: 0
[2026-01-11 08:53:07] 2026-01-11 07:53:07,263 [wrapper] pandaids: 6963156170
[2026-01-11 08:53:07] 2026-01-11 07:53:07,281 [wrapper] cleanup supervisor_pilot 3612846 3512590
[2026-01-11 08:53:07] 2026-01-11 07:53:07,284 [wrapper] Test setup, not cleaning
[2026-01-11 08:53:07] 2026-01-11 07:53:07,286 [wrapper] apfmon messages muted
[2026-01-11 08:53:07] 2026-01-11 07:53:07,288 [wrapper] ==== wrapper stdout END ====
[2026-01-11 08:53:07] 2026-01-11 07:53:07,289 [wrapper] ==== wrapper stderr END ====
[2026-01-11 08:53:07]  *** Error codes and diagnostics ***
[2026-01-11 08:53:07]     "exeErrorCode": 0,
[2026-01-11 08:53:07]     "exeErrorDiag": "",
[2026-01-11 08:53:07]     "pilotErrorCode": 0,
[2026-01-11 08:53:07]     "pilotErrorDiag": "",
[2026-01-11 08:53:07]  *** Listing of results directory ***
[2026-01-11 08:53:07] insgesamt 437280
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc    579449  8. Jan 20:06 pilot3.tar.gz
[2026-01-11 08:53:07] -rwx------ 1 boinc boinc     36322  8. Jan 20:07 runpilot2-wrapper.sh
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc      5112  8. Jan 20:07 queuedata.json
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc       100 11. Jan 06:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 08:53:07] -rwxr-xr-x 1 boinc boinc      7986 11. Jan 06:26 run_atlas
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc       105 11. Jan 06:26 job.xml
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc      9632 11. Jan 06:26 init_data.xml
[2026-01-11 08:53:07] -rw-r--r-- 2 boinc boinc 222055368 11. Jan 06:26 EVNT.47898824._000893.pool.root.1
[2026-01-11 08:53:07] -rw-r--r-- 2 boinc boinc     15847 11. Jan 06:26 start_atlas.sh
[2026-01-11 08:53:07] drwxrwx--x 2 boinc boinc      4096 11. Jan 06:26 shared
[2026-01-11 08:53:07] -rw-r--r-- 2 boinc boinc    592394 11. Jan 06:26 input.tar.gz
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc         0 11. Jan 06:26 boinc_lockfile
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc      2518 11. Jan 06:26 pandaJob.out
[2026-01-11 08:53:07] -rw------- 1 boinc boinc        52 11. Jan 06:26 setup.sh.local
[2026-01-11 08:53:07] -rw------- 1 boinc boinc    989548 11. Jan 06:26 agis_schedconf.cvmfs.json
[2026-01-11 08:53:07] -rw------- 1 boinc boinc   1516240 11. Jan 06:26 agis_ddmendpoints.agis.ALL.json
[2026-01-11 08:53:07] drwx------ 5 boinc boinc      4096 11. Jan 06:26 pilot3
[2026-01-11 08:53:07] -rw------- 1 boinc boinc 218601238 11. Jan 08:51 HITS.47898826._031347.pool.root.1
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc       529 11. Jan 08:51 boinc_task_state.xml
[2026-01-11 08:53:07] -rw------- 1 boinc boinc      1032 11. Jan 08:52 memory_monitor_summary.json
[2026-01-11 08:53:07] -rw------- 1 boinc boinc    322075 11. Jan 08:52 log.47898826._031347.job.log.tgz.1
[2026-01-11 08:53:07] -rw------- 1 boinc boinc      7760 11. Jan 08:52 heartbeat.json
[2026-01-11 08:53:07] -rw------- 1 boinc boinc        95 11. Jan 08:52 pilot_heartbeat.json
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc      8192 11. Jan 08:52 boinc_mmap_file
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc        27 11. Jan 08:52 wrapper_checkpoint.txt
[2026-01-11 08:53:07] -rw------- 1 boinc boinc      4897 11. Jan 08:53 pilotlog.txt
[2026-01-11 08:53:07] -rw------- 1 boinc boinc   1276044 11. Jan 08:53 log.47898826._031347.job.log.1
[2026-01-11 08:53:07] -rw------- 1 boinc boinc       357 11. Jan 08:53 output.list
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc       620 11. Jan 08:53 runtime_log
[2026-01-11 08:53:07] -rw------- 1 boinc boinc   1617920 11. Jan 08:53 result.tar.gz
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc      9298 11. Jan 08:53 runtime_log.err
[2026-01-11 08:53:07] -rw------- 1 boinc boinc       642 11. Jan 08:53 gqMNDmhWAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMFlKDmutgsyn.diag
[2026-01-11 08:53:07] -rw-r--r-- 1 boinc boinc     20754 11. Jan 08:53 stderr.txt
[2026-01-11 08:53:07] HITS file was successfully produced:
[2026-01-11 08:53:07] -rw------- 1 boinc boinc 218601238 11. Jan 08:51 shared/HITS.pool.root.1
[2026-01-11 08:53:07]  *** Contents of shared directory: ***
[2026-01-11 08:53:07] insgesamt 432516
[2026-01-11 08:53:07] -rw-r--r-- 2 boinc boinc 222055368 11. Jan 06:26 ATLAS.root_0
[2026-01-11 08:53:07] -rw-r--r-- 2 boinc boinc     15847 11. Jan 06:26 start_atlas.sh
[2026-01-11 08:53:07] -rw-r--r-- 2 boinc boinc    592394 11. Jan 06:26 input.tar.gz
[2026-01-11 08:53:07] -rw------- 1 boinc boinc 218601238 11. Jan 08:51 HITS.pool.root.1
[2026-01-11 08:53:07] -rw------- 1 boinc boinc   1617920 11. Jan 08:53 result.tar.gz
08:53:08 (3508871): run_atlas exited; CPU time 25726.384437
08:53:08 (3508871): called boinc_finish(0)

</stderr_txt>
]]>

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