Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:55:04 (2927996): wrapper (7.7.26015): starting
00:55:04 (2927996): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 00:55:04] Arguments: --nthreads 4
[2026-01-10 00:55:04] Threads: 4
[2026-01-10 00:55:04] Checking for CVMFS
[2026-01-10 00:55:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:55:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:55:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:55:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:55:04] 2.9.2.0 2024436 3329 95064 154961 1 57 25931757 36864001 0 130560 0 2332766 99.989 122488 6099 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 00:55:04] CVMFS is ok
[2026-01-10 00:55:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:55:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:55:04] Further information can be found at the LHC@home message board.
[2026-01-10 00:55:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:55:04] Checking for apptainer binary...
[2026-01-10 00:55:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:55:04] Running /usr/bin/apptainer --version
[2026-01-10 00:55:04] apptainer version 1.4.1-1.1
[2026-01-10 00:55:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:55:04] magicA250
[2026-01-10 00:55:04] apptainer works
[2026-01-10 00:55:04] Set ATHENA_PROC_NUMBER=4
[2026-01-10 00:55:04] Set ATHENA_CORE_NUMBER=4
[2026-01-10 00:55:04] Starting ATLAS job with PandaID=6963187006
[2026-01-10 00:55:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:33:24]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | job 6963187006 has completed (purged errors)
[2026-01-10 02:33:24] 2026-01-10 01:32:43,241 | INFO     | overall cleanup function is called
[2026-01-10 02:33:24] 2026-01-10 01:32:44,247 | INFO     | --- collectZombieJob: --- 10, [2938358]
[2026-01-10 02:33:24] 2026-01-10 01:32:44,248 | INFO     | zombie collector waiting for pid 2938358
[2026-01-10 02:33:24] 2026-01-10 01:32:44,248 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:33:24] 2026-01-10 01:32:44,248 | INFO     | collected zombie processes
[2026-01-10 02:33:24] 2026-01-10 01:32:44,248 | INFO     | will attempt to kill all subprocesses of pid=2938358
[2026-01-10 02:33:24] 2026-01-10 01:32:44,292 | INFO     | process IDs to be killed: [2938358] (in reverse order)
[2026-01-10 02:33:24] 2026-01-10 01:32:44,325 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:33:24] 2026-01-10 01:32:44,325 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:33:24] 2026-01-10 01:32:44,327 | INFO     | did not find any defunct processes belonging to 2938358
[2026-01-10 02:33:24] 2026-01-10 01:32:44,328 | INFO     | did not find any defunct processes belonging to 2938358
[2026-01-10 02:33:24] 2026-01-10 01:32:44,328 | INFO     | ready for new job
[2026-01-10 02:33:24] 2026-01-10 01:32:44,328 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:33:24] 2026-01-10 01:32:44,329 | INFO     | ***************************************
[2026-01-10 02:33:24] 2026-01-10 01:32:44,329 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:33:24] 2026-01-10 01:32:44,329 | INFO     | ***************************************
[2026-01-10 02:33:24] 2026-01-10 01:32:44,329 | INFO     | 
[2026-01-10 02:33:24] 2026-01-10 01:32:44,330 | INFO     | architecture information:
[2026-01-10 02:33:24] 2026-01-10 01:32:44,330 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:33:24] 2026-01-10 01:32:44,344 | INFO     | cat /etc/os-release:
[2026-01-10 02:33:24] NAME="CentOS Linux"
[2026-01-10 02:33:24] VERSION="7 (Core)"
[2026-01-10 02:33:24] ID="centos"
[2026-01-10 02:33:24] ID_LIKE="rhel fedora"
[2026-01-10 02:33:24] VERSION_ID="7"
[2026-01-10 02:33:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:33:24] ANSI_COLOR="0;31"
[2026-01-10 02:33:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:33:24] HOME_URL="https://www.centos.org/"
[2026-01-10 02:33:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:33:24] 
[2026-01-10 02:33:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:33:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:33:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:33:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:33:24] 
[2026-01-10 02:33:24] 2026-01-10 01:32:44,344 | INFO     | ***************************************
[2026-01-10 02:33:24] 2026-01-10 01:32:44,564 | WARNING  | process 2938358 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 02:33:24] 2026-01-10 01:32:44,598 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 02:33:24] 2026-01-10 01:32:44,638 | INFO     | number of running child processes to parent process 2938358: 1
[2026-01-10 02:33:24] 2026-01-10 01:32:44,638 | INFO     | maximum number of monitored processes: 6
[2026-01-10 02:33:24] 2026-01-10 01:32:44,638 | INFO     | aborting job monitoring since job object (job id=6963187006) has expired
[2026-01-10 02:33:24] 2026-01-10 01:32:44,847 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 02:33:24] 2026-01-10 01:32:44,863 | INFO     | sufficient remaining disk space (334007107584 B)
[2026-01-10 02:33:24] 2026-01-10 01:32:44,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:33:24] 2026-01-10 01:32:44,863 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:33:24] 2026-01-10 01:32:44,863 | INFO     | update_server=False
[2026-01-10 02:33:24] 2026-01-10 01:32:44,863 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:33:24] 2026-01-10 01:32:44,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:33:24] 2026-01-10 01:32:44,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:33:24] 2026-01-10 01:32:44,864 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:33:24] 2026-01-10 01:32:44,864 | INFO     | will abort loop
[2026-01-10 02:33:24] 2026-01-10 01:32:45,087 | INFO     | all data control threads have been joined
[2026-01-10 02:33:24] 2026-01-10 01:32:45,185 | INFO     | all job control threads have been joined
[2026-01-10 02:33:24] 2026-01-10 01:32:45,404 | INFO     | all payload control threads have been joined
[2026-01-10 02:33:24] 2026-01-10 01:32:45,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:33:24] 2026-01-10 01:32:45,869 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:45,869 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:45,870 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,093 | INFO     | [data] control thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,176 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,191 | INFO     | [job] control thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,331 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,410 | INFO     | [payload] control thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,678 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,870 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,920 | INFO     | [job] validate thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,921 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:46,972 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:47,046 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:47,258 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:32:49,786 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:33:24] 2026-01-10 01:33:15,128 | INFO     | PID=2931779 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 02:33:24] 2026-01-10 01:33:15,128 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:33:24] 2026-01-10 01:33:15,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:33:24] 2026-01-10 01:33:15,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:33:24] 2026-01-10 01:33:19,429 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:33:24] 2026-01-10 01:33:19,461 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140291133458240)>', '<ExcThread(monitor, started 140290207774464)>']
[2026-01-10 02:33:24] 2026-01-10 01:33:20,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:33:24] 2026-01-10 01:33:20,155 | INFO     | [monitor] control thread has ended
[2026-01-10 02:33:24] 2026-01-10 01:33:24,487 | INFO     | all workflow threads have been joined
[2026-01-10 02:33:24] 2026-01-10 01:33:24,488 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:33:24] 2026-01-10 01:33:24,488 | INFO     | traces error code: 0
[2026-01-10 02:33:24] 2026-01-10 01:33:24,488 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:33:24] 2026-01-10 01:33:24,568 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:33:24] 2026-01-10 01:33:24,573 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:33:24] 2026-01-10 01:33:24,577 [wrapper] pilotpid: 2931779
[2026-01-10 02:33:24] 2026-01-10 01:33:24,581 [wrapper] Pilot exit status: 0
[2026-01-10 02:33:24] 2026-01-10 01:33:24,592 [wrapper] pandaids: 6963187006
[2026-01-10 02:33:24] 2026-01-10 01:33:24,615 [wrapper] cleanup supervisor_pilot 2950522 2931780
[2026-01-10 02:33:24] 2026-01-10 01:33:24,619 [wrapper] Test setup, not cleaning
[2026-01-10 02:33:24] 2026-01-10 01:33:24,623 [wrapper] apfmon messages muted
[2026-01-10 02:33:24] 2026-01-10 01:33:24,626 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:33:24] 2026-01-10 01:33:24,630 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:33:24]  *** Error codes and diagnostics ***
[2026-01-10 02:33:24]     "exeErrorCode": 0,
[2026-01-10 02:33:24]     "exeErrorDiag": "",
[2026-01-10 02:33:24]     "pilotErrorCode": 0,
[2026-01-10 02:33:24]     "pilotErrorDiag": "",
[2026-01-10 02:33:24]  *** Listing of results directory ***
[2026-01-10 02:33:24] total 440700
[2026-01-10 02:33:24] -rwx------ 1 boinc boinc     36322 Jan  9 02:01 runpilot2-wrapper.sh
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc    579449 Jan  9 02:06 pilot3.tar.gz
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc      5112 Jan  9 02:06 queuedata.json
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:33:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:55 run_atlas
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:55 job.xml
[2026-01-10 02:33:24] -rw-r--r-- 2 boinc boinc 227457343 Jan 10 00:55 EVNT.47898824._001415.pool.root.1
[2026-01-10 02:33:24] -rw-r--r-- 2 boinc boinc    592399 Jan 10 00:55 input.tar.gz
[2026-01-10 02:33:24] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:55 start_atlas.sh
[2026-01-10 02:33:24] drwxrwx--x 2 boinc boinc      4096 Jan 10 00:55 shared
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:55 boinc_setup_complete
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc      6378 Jan 10 00:55 init_data.xml
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:55 boinc_lockfile
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc      2519 Jan 10 00:55 pandaJob.out
[2026-01-10 02:33:24] -rw------- 1 boinc boinc    989374 Jan 10 00:55 agis_schedconf.cvmfs.json
[2026-01-10 02:33:24] -rw------- 1 boinc boinc   1516240 Jan 10 00:55 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:33:24] drwx------ 5 boinc boinc      4096 Jan 10 00:55 pilot3
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc       529 Jan 10 02:32 boinc_task_state.xml
[2026-01-10 02:33:24] -rw------- 1 boinc boinc 217640554 Jan 10 02:32 HITS.47898826._036914.pool.root.1
[2026-01-10 02:33:24] -rw------- 1 boinc boinc      1024 Jan 10 02:32 memory_monitor_summary.json
[2026-01-10 02:33:24] -rw------- 1 boinc boinc    287660 Jan 10 02:32 log.47898826._036914.job.log.tgz.1
[2026-01-10 02:33:24] -rw------- 1 boinc boinc        95 Jan 10 02:32 pilot_heartbeat.json
[2026-01-10 02:33:24] -rw------- 1 boinc boinc      7770 Jan 10 02:32 heartbeat.json
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc      8192 Jan 10 02:33 boinc_mmap_file
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc        27 Jan 10 02:33 wrapper_checkpoint.txt
[2026-01-10 02:33:24] -rw------- 1 boinc boinc      5276 Jan 10 02:33 pilotlog.txt
[2026-01-10 02:33:24] -rw------- 1 boinc boinc    850941 Jan 10 02:33 log.47898826._036914.job.log.1
[2026-01-10 02:33:24] -rw------- 1 boinc boinc       357 Jan 10 02:33 output.list
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc       620 Jan 10 02:33 runtime_log
[2026-01-10 02:33:24] -rw------- 1 boinc boinc   1157120 Jan 10 02:33 result.tar.gz
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc      8912 Jan 10 02:33 runtime_log.err
[2026-01-10 02:33:24] -rw------- 1 boinc boinc       661 Jan 10 02:33 OSuKDmv3Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd3lKDmTUtnwm.diag
[2026-01-10 02:33:24] -rw-r--r-- 1 boinc boinc     12257 Jan 10 02:33 stderr.txt
[2026-01-10 02:33:24] HITS file was successfully produced:
[2026-01-10 02:33:24] -rw------- 1 boinc boinc 217640554 Jan 10 02:32 shared/HITS.pool.root.1
[2026-01-10 02:33:24]  *** Contents of shared directory: ***
[2026-01-10 02:33:24] total 436404
[2026-01-10 02:33:24] -rw-r--r-- 2 boinc boinc 227457343 Jan 10 00:55 ATLAS.root_0
[2026-01-10 02:33:24] -rw-r--r-- 2 boinc boinc    592399 Jan 10 00:55 input.tar.gz
[2026-01-10 02:33:24] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:55 start_atlas.sh
[2026-01-10 02:33:24] -rw------- 1 boinc boinc 217640554 Jan 10 02:32 HITS.pool.root.1
[2026-01-10 02:33:24] -rw------- 1 boinc boinc   1157120 Jan 10 02:33 result.tar.gz
02:33:26 (2927996): run_atlas exited; CPU time 22291.490162
02:33:26 (2927996): called boinc_finish(0)

</stderr_txt>
]]>

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