Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:47:06 (2503578): wrapper (7.7.26015): starting
23:47:06 (2503578): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 23:47:06] Arguments: --nthreads 12
[2026-01-08 23:47:06] Threads: 12
[2026-01-08 23:47:06] Checking for CVMFS
[2026-01-08 23:47:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:47:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:47:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:47:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:47:08] 2.11.5.0 2639569 91426 148408 154936 1 384 42742293 45568001 16909 130560 0 714945381 99.780 452552066 23077 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.164:3129 1
[2026-01-08 23:47:08] CVMFS is ok
[2026-01-08 23:47:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 23:47:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 23:47:08] Further information can be found at the LHC@home message board.
[2026-01-08 23:47:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:47:08] Checking for apptainer binary...
[2026-01-08 23:47:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:47:08] Running /usr/bin/apptainer --version
[2026-01-08 23:47:09] apptainer version 1.4.1-1.el9
[2026-01-08 23:47:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:47:10] wns0026.triumf.lcg
[2026-01-08 23:47:10] apptainer works
[2026-01-08 23:47:10] Set ATHENA_PROC_NUMBER=12
[2026-01-08 23:47:10] Set ATHENA_CORE_NUMBER=12
[2026-01-08 23:47:10] Starting ATLAS job with PandaID=6963167190
[2026-01-08 23:47:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 23:52:59]  *** The last 200 lines of the pilot log: ***
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | WARNING  | wrong length of table data, x=[1767944968.0], y=[25476.0] (must be same and length>=4)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | could have reported an average CPU frequency of 2685 MHz (4 samples)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | ..............................
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . Timing measurements:
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . get job = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . initial setup = 5 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . payload setup = 27 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . stage-in = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . payload execution = 58 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . stage-out = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . log creation = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | ..............................
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963167190/pilotlog.txt
[2026-01-08 23:52:59] 2026-01-09 07:52:24,950 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-08 23:52:59] - Log from pilotlog.txt -
[2026-01-08 23:52:59] 2026-01-09 07:52:24,726 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963167190/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | INFO     | extracted standard info from prmon json
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | WARNING  | wrong length of table data, x=[1767944968.0], y=[25476.0] (must be same and length>=4)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | could have reported an average CPU frequency of 2685 MHz (4 samples)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | ..............................
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . Timing measurements:
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . get job = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . initial setup = 5 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . payload setup = 27 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . stage-in = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . payload execution = 58 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . stage-out = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . log creation = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | ..............................
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963167190/pilotlog.txt
[2026-01-08 23:52:59] 2026-01-09 07:52:24,950 | WARNING  | 
[2026-01-08 23:52:59] [begin log extracts]
[2026-01-08 23:52:59] - Log from pilotlog.txt -
[2026-01-08 23:52:59] 2026-01-09 07:52:24,726 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963167190/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | INFO     | extracted standard info from prmon json
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 23:52:59] 2026-01-09 07:52:24,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | WARNING  | wrong length of table data, x=[1767944968.0], y=[25476.0] (must be same and length>=4)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | could have reported an average CPU frequency of 2685 MHz (4 samples)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | ..............................
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . Timing measurements:
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . get job = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . initial setup = 5 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . payload setup = 27 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . stage-in = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . payload execution = 58 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . stage-out = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | . log creation = 0 s
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | ..............................
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 23:52:59] 2026-01-09 07:52:24,728 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963167190/pilotlog.txt
[2026-01-08 23:52:59] [end log extracts]
[2026-01-08 23:52:59] 2026-01-09 07:52:24,951 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-01-08 23:52:59] 2026-01-09 07:52:24,951 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-08 23:52:59] 2026-01-09 07:52:25,428 | INFO     | time since job start (276s) is within the limit (349056.0s)
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | 
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | job summary report
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | --------------------------------------------------
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | PanDA job id: 6963167190
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | task id: 47898826
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-08 23:49:56,191 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 23:52:59] 2026-01-09 07:52:25,758 | INFO     | pilot state: failed 
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | transexitcode: 65
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | exeerrorcode: 65
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | exitcode: 65
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | cpuconsumptiontime: 18 s
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | nevents: 0
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | neventsw: 0
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | pid: 2521220
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | pgrp: 2521220
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | corecount: 12
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | event service: False
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | sizes: {0: 2283797, 1: 2283996, 12: 2283996, 22: 2284286, 23: 2284314, 89: 2307751, 91: 2312071, 229: 2312209}
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | --------------------------------------------------
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | 
[2026-01-08 23:52:59] 2026-01-09 07:52:25,759 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-08 23:52:59] 2026-01-09 07:52:25,816 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,817 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 23:52:59] 2026-01-09 07:52:25,818 | INFO     | job 6963167190 has completed (purged errors)
[2026-01-08 23:52:59] 2026-01-09 07:52:25,818 | INFO     | overall cleanup function is called
[2026-01-08 23:52:59] 2026-01-09 07:52:26,824 | INFO     | --- collectZombieJob: --- 10, [2521220]
[2026-01-08 23:52:59] 2026-01-09 07:52:26,824 | INFO     | zombie collector waiting for pid 2521220
[2026-01-08 23:52:59] 2026-01-09 07:52:26,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 23:52:59] 2026-01-09 07:52:26,824 | INFO     | collected zombie processes
[2026-01-08 23:52:59] 2026-01-09 07:52:26,824 | INFO     | will attempt to kill all subprocesses of pid=2521220
[2026-01-08 23:52:59] 2026-01-09 07:52:27,443 | INFO     | process IDs to be killed: [2521220] (in reverse order)
[2026-01-08 23:52:59] 2026-01-09 07:52:27,740 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 23:52:59] 2026-01-09 07:52:27,741 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 23:52:59] 2026-01-09 07:52:27,752 | INFO     | did not find any defunct processes belonging to 2521220
[2026-01-08 23:52:59] 2026-01-09 07:52:27,767 | INFO     | did not find any defunct processes belonging to 2521220
[2026-01-08 23:52:59] 2026-01-09 07:52:27,767 | INFO     | ready for new job
[2026-01-08 23:52:59] 2026-01-09 07:52:27,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 23:52:59] 2026-01-09 07:52:27,768 | INFO     | ***************************************
[2026-01-08 23:52:59] 2026-01-09 07:52:27,769 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 23:52:59] 2026-01-09 07:52:27,769 | INFO     | ***************************************
[2026-01-08 23:52:59] 2026-01-09 07:52:27,769 | INFO     | 
[2026-01-08 23:52:59] 2026-01-09 07:52:27,771 | INFO     | architecture information:
[2026-01-08 23:52:59] 2026-01-09 07:52:27,772 | INFO     | executing command: cat /etc/os-release
[2026-01-08 23:52:59] 2026-01-09 07:52:27,784 | INFO     | cat /etc/os-release:
[2026-01-08 23:52:59] NAME="CentOS Linux"
[2026-01-08 23:52:59] VERSION="7 (Core)"
[2026-01-08 23:52:59] ID="centos"
[2026-01-08 23:52:59] ID_LIKE="rhel fedora"
[2026-01-08 23:52:59] VERSION_ID="7"
[2026-01-08 23:52:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 23:52:59] ANSI_COLOR="0;31"
[2026-01-08 23:52:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 23:52:59] HOME_URL="https://www.centos.org/"
[2026-01-08 23:52:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 23:52:59] 
[2026-01-08 23:52:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 23:52:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 23:52:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 23:52:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 23:52:59] 
[2026-01-08 23:52:59] 2026-01-09 07:52:27,784 | INFO     | ***************************************
[2026-01-08 23:52:59] 2026-01-09 07:52:28,288 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-08 23:52:59] 2026-01-09 07:52:28,369 | INFO     | sufficient remaining disk space (1470602674176 B)
[2026-01-08 23:52:59] 2026-01-09 07:52:28,370 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 23:52:59] 2026-01-09 07:52:28,370 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 23:52:59] 2026-01-09 07:52:28,370 | INFO     | update_server=False
[2026-01-08 23:52:59] 2026-01-09 07:52:28,370 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 23:52:59] 2026-01-09 07:52:28,372 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 23:52:59] 2026-01-09 07:52:28,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 23:52:59] 2026-01-09 07:52:28,733 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:52:59] 2026-01-09 07:52:28,733 | INFO     | aborting loop
[2026-01-08 23:52:59] 2026-01-09 07:52:29,163 | INFO     | all payload control threads have been joined
[2026-01-08 23:52:59] 2026-01-09 07:52:29,270 | INFO     | all data control threads have been joined
[2026-01-08 23:52:59] 2026-01-09 07:52:29,378 | INFO     | [job] retrieve thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:29,521 | INFO     | [payload] failed_post thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:29,538 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:29,626 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:29,673 | INFO     | all job control threads have been joined
[2026-01-08 23:52:59] 2026-01-09 07:52:29,739 | INFO     | [job] job monitor thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:29,859 | INFO     | [payload] validate_post thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:29,978 | INFO     | [data] copytool_in thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:30,143 | INFO     | [job] validate thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:30,169 | INFO     | [payload] control thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:30,276 | INFO     | [data] control thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:30,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:52:59] 2026-01-09 07:52:30,379 | INFO     | [data] copytool_out thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:30,679 | INFO     | [job] control thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:30,705 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:30,828 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:31,331 | INFO     | [job] queue monitor thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:32,596 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 23:52:59] 2026-01-09 07:52:49,467 | INFO     | [monitor] cgroup control has ended
[2026-01-08 23:52:59] 2026-01-09 07:52:51,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140529551603520)>', '<ExcThread(monitor, started 140528704284416)>']
[2026-01-08 23:52:59] 2026-01-09 07:52:56,089 | INFO     | all workflow threads have been joined
[2026-01-08 23:52:59] 2026-01-09 07:52:56,089 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 23:52:59] 2026-01-09 07:52:56,089 | INFO     | traces error code: 0
[2026-01-08 23:52:59] 2026-01-09 07:52:56,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 23:52:59] 2026-01-09 07:52:59,102 | INFO     | PID=2509992 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 23:52:59] 2026-01-09 07:52:59,103 | INFO     | .. there are 28 such processes running
[2026-01-08 23:52:59] 2026-01-09 07:52:59,103 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 23:52:59] 2026-01-09 07:52:59,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 23:52:59] 2026-01-09 07:52:59,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 23:52:59] 2026-01-09 07:52:59,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 23:52:59] 2026-01-09 07:52:59,103 | CRITICAL | thread 'MainThread' is not alive
[2026-01-08 23:52:59] 2026-01-09 07:52:59,104 | INFO     | [monitor] control thread has ended
[2026-01-08 23:52:59] 2026-01-09 07:52:59,240 [wrapper] ==== pilot stdout END ====
[2026-01-08 23:52:59] 2026-01-09 07:52:59,243 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 23:52:59] 2026-01-09 07:52:59,245 [wrapper] pilotpid: 2509992
[2026-01-08 23:52:59] 2026-01-09 07:52:59,246 [wrapper] Pilot exit status: 0
[2026-01-08 23:52:59] 2026-01-09 07:52:59,299 [wrapper] pandaids: 6963167190
[2026-01-08 23:52:59] 2026-01-09 07:52:59,601 [wrapper] cleanup supervisor_pilot 2510001 2509993
[2026-01-08 23:52:59] 2026-01-09 07:52:59,618 [wrapper] Test setup, not cleaning
[2026-01-08 23:52:59] 2026-01-09 07:52:59,629 [wrapper] apfmon messages muted
[2026-01-08 23:52:59] 2026-01-09 07:52:59,655 [wrapper] ==== wrapper stdout END ====
[2026-01-08 23:52:59] 2026-01-09 07:52:59,675 [wrapper] ==== wrapper stderr END ====
[2026-01-08 23:52:59]  *** Error codes and diagnostics ***
[2026-01-08 23:52:59]     "exeErrorCode": 65,
[2026-01-08 23:52:59]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-01-08 23:52:59]     "pilotErrorCode": 1305,
[2026-01-08 23:52:59]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-01-08 23:52:59]  *** Listing of results directory ***
[2026-01-08 23:52:59] total 221740
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc    579449 Jan  8 16:57 pilot3.tar.gz
[2026-01-08 23:52:59] -rwx------. 1 boinc boinc     36322 Jan  8 16:59 runpilot2-wrapper.sh
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc      5112 Jan  8 17:02 queuedata.json
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc       100 Jan  8 23:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 23:52:59] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 23:47 run_atlas
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc       105 Jan  8 23:47 job.xml
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc      6594 Jan  8 23:47 init_data.xml
[2026-01-08 23:52:59] -rw-r--r--. 2 boinc boinc 222919912 Jan  8 23:47 EVNT.47898824._001378.pool.root.1
[2026-01-08 23:52:59] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:47 start_atlas.sh
[2026-01-08 23:52:59] drwxrwx--x. 2 boinc boinc      4096 Jan  8 23:47 shared
[2026-01-08 23:52:59] -rw-r--r--. 2 boinc boinc    592398 Jan  8 23:47 input.tar.gz
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc         0 Jan  8 23:47 boinc_lockfile
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc      2520 Jan  8 23:47 pandaJob.out
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc    989771 Jan  8 23:47 agis_schedconf.cvmfs.json
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc   1516240 Jan  8 23:47 agis_ddmendpoints.agis.ALL.json
[2026-01-08 23:52:59] drwx------. 5 boinc boinc      4096 Jan  8 23:47 pilot3
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc       524 Jan  8 23:49 boinc_task_state.xml
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc      1000 Jan  8 23:50 memory_monitor_summary.json
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc     22560 Jan  8 23:50 log.47898826._035565.job.log.tgz.1
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc      8446 Jan  8 23:52 heartbeat.json
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc        22 Jan  8 23:52 wrapper_checkpoint.txt
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc       893 Jan  8 23:52 pilotlog.txt
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc        95 Jan  8 23:52 pilot_heartbeat.json
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc      8192 Jan  8 23:52 boinc_mmap_file
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc     94634 Jan  8 23:52 log.47898826._035565.job.log.1
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc       188 Jan  8 23:52 output.list
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc       620 Jan  8 23:52 runtime_log
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc    133120 Jan  8 23:52 result.tar.gz
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc      8636 Jan  8 23:52 runtime_log.err
[2026-01-08 23:52:59] -rw-------. 1 boinc boinc       645 Jan  8 23:52 1xXNDmM1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmMlgKDm5kNAon.diag
[2026-01-08 23:52:59] -rw-r--r--. 1 boinc boinc     21807 Jan  8 23:52 stderr.txt
[2026-01-08 23:53:00] No HITS result produced
[2026-01-08 23:53:00]  *** Contents of shared directory: ***
[2026-01-08 23:53:00] total 218428
[2026-01-08 23:53:00] -rw-r--r--. 2 boinc boinc 222919912 Jan  8 23:47 ATLAS.root_0
[2026-01-08 23:53:00] -rw-r--r--. 2 boinc boinc     15847 Jan  8 23:47 start_atlas.sh
[2026-01-08 23:53:00] -rw-r--r--. 2 boinc boinc    592398 Jan  8 23:47 input.tar.gz
[2026-01-08 23:53:00] -rw-------. 1 boinc boinc    133120 Jan  8 23:52 result.tar.gz
23:53:01 (2503578): run_atlas exited; CPU time 29.874958
23:53:01 (2503578): called boinc_finish(0)

</stderr_txt>
]]>

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