Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:10:44 (15463): wrapper (7.7.26015): starting
11:10:44 (15463): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 11:10:44] Arguments: --nthreads 8
[2026-01-09 11:10:44] Threads: 8
[2026-01-09 11:10:44] Checking for CVMFS
[2026-01-09 11:10:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 11:10:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 11:10:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 11:10:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 11:10:45] 2.11.2.0 7091 35278 92808 154938 1 57 17559576 25165825 0 130560 0 16091839 99.808 9225249 3302 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 11:10:45] CVMFS is ok
[2026-01-09 11:10:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 11:10:45] Checking for apptainer binary...
[2026-01-09 11:10:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 11:10:45] Running /usr/bin/apptainer --version
[2026-01-09 11:10:45] apptainer version 1.3.2-1.el7
[2026-01-09 11:10:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 11:10:46] cg-vwn433.simple-grid.lan
[2026-01-09 11:10:46] apptainer works
[2026-01-09 11:10:47] Set ATHENA_PROC_NUMBER=8
[2026-01-09 11:10:47] Set ATHENA_CORE_NUMBER=8
[2026-01-09 11:10:47] Starting ATLAS job with PandaID=6963165979
[2026-01-09 11:10:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:06:27]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:06:27] 2026-01-09 13:05:47,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,118 | INFO     | time since job start (10485s) is within the limit (349056.0s)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,349 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 14:06:27] 2026-01-09 13:05:49,350 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 14:06:27] 2026-01-09 13:05:49,352 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6963165979/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,353 | INFO     | extracted standard info from prmon json
[2026-01-09 14:06:27] 2026-01-09 13:05:49,353 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:06:27] 2026-01-09 13:05:49,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:06:27] 2026-01-09 13:05:49,354 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:06:27] 2026-01-09 13:05:49,354 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:06:27] 2026-01-09 13:05:49,358 | INFO     | fitting pss+swap vs Time
[2026-01-09 14:06:27] 2026-01-09 13:05:49,358 | INFO     | sum of square deviations: 1577789583.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,360 | INFO     | sum of deviations: 17549131571.5
[2026-01-09 14:06:27] 2026-01-09 13:05:49,360 | INFO     | mean x: 1767958717.5
[2026-01-09 14:06:27] 2026-01-09 13:05:49,360 | INFO     | mean y: 2469892.738372093
[2026-01-09 14:06:27] 2026-01-09 13:05:49,360 | INFO     | intersect: -19661837997.66801
[2026-01-09 14:06:27] 2026-01-09 13:05:49,361 | INFO     | chi2: 2.272314054879398
[2026-01-09 14:06:27] 2026-01-09 13:05:49,361 | INFO     | sum of square deviations: 1444149868.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,362 | INFO     | sum of deviations: 28206113727.000004
[2026-01-09 14:06:27] 2026-01-09 13:05:49,362 | INFO     | mean x: 1767958565.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,363 | INFO     | mean y: 2481747.6766467066
[2026-01-09 14:06:27] 2026-01-09 13:05:49,363 | INFO     | intersect: -34528034408.5688
[2026-01-09 14:06:27] 2026-01-09 13:05:49,363 | INFO     | chi2: 1.5027675798409408
[2026-01-09 14:06:27] 2026-01-09 13:05:49,363 | INFO     | current chi2=1.5027675798409408 (change=33.866202314155935 %)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,364 | INFO     | sum of square deviations: 1318277740.5
[2026-01-09 14:06:27] 2026-01-09 13:05:49,365 | INFO     | sum of deviations: 27276003844.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,365 | INFO     | mean x: 1767958412.5
[2026-01-09 14:06:27] 2026-01-09 13:05:49,365 | INFO     | mean y: 2480620.4814814813
[2026-01-09 14:06:27] 2026-01-09 13:05:49,365 | INFO     | intersect: -36577701972.218636
[2026-01-09 14:06:27] 2026-01-09 13:05:49,366 | INFO     | chi2: 1.5036596460990577
[2026-01-09 14:06:27] 2026-01-09 13:05:49,366 | INFO     | current chi2=1.5036596460990577 (change=-0.05936155863911477 %)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,366 | INFO     | right removable region: 161
[2026-01-09 14:06:27] 2026-01-09 13:05:49,366 | INFO     | sum of square deviations: 1444149868.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,367 | INFO     | sum of deviations: -8047416948.000002
[2026-01-09 14:06:27] 2026-01-09 13:05:49,368 | INFO     | mean x: 1767958870.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,368 | INFO     | mean y: 2498704.1796407187
[2026-01-09 14:06:27] 2026-01-09 13:05:49,368 | INFO     | intersect: 9854317057.013456
[2026-01-09 14:06:27] 2026-01-09 13:05:49,368 | INFO     | chi2: 0.852721203971803
[2026-01-09 14:06:27] 2026-01-09 13:05:49,368 | INFO     | current chi2=0.852721203971803 (change=62.47344410246758 %)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,369 | INFO     | sum of square deviations: 1318277740.5
[2026-01-09 14:06:27] 2026-01-09 13:05:49,370 | INFO     | sum of deviations: -13006636122.999998
[2026-01-09 14:06:27] 2026-01-09 13:05:49,370 | INFO     | mean x: 1767959022.5
[2026-01-09 14:06:27] 2026-01-09 13:05:49,370 | INFO     | mean y: 2504635.4938271604
[2026-01-09 14:06:27] 2026-01-09 13:05:49,370 | INFO     | intersect: 17445869549.86353
[2026-01-09 14:06:27] 2026-01-09 13:05:49,371 | INFO     | chi2: 0.798183584302381
[2026-01-09 14:06:27] 2026-01-09 13:05:49,371 | INFO     | current chi2=0.798183584302381 (change=6.39571520156843 %)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,371 | INFO     | left removable region: 20
[2026-01-09 14:06:27] 2026-01-09 13:05:49,371 | INFO     | sum of square deviations: 869188390.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,372 | INFO     | sum of deviations: -2522914249.9999986
[2026-01-09 14:06:27] 2026-01-09 13:05:49,372 | INFO     | mean x: 1767958992.0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,372 | INFO     | mean y: 2518984.85106383
[2026-01-09 14:06:27] 2026-01-09 13:05:49,372 | INFO     | intersect: 5134213086.669927
[2026-01-09 14:06:27] 2026-01-09 13:05:49,373 | INFO     | chi2: 0.004802113732597516
[2026-01-09 14:06:27] 2026-01-09 13:05:49,373 | INFO     | current memory leak: -2.90 B/s (using 141 data points, chi2=0.00)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,373 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | ..............................
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . Timing measurements:
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . get job = 0 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . initial setup = 2 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . payload setup = 9 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . stage-in = 0 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . payload execution = 10442 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . stage-out = 1 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,374 | INFO     | . log creation = 0 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,375 | INFO     | ..............................
[2026-01-09 14:06:27] 2026-01-09 13:05:49,492 | INFO     | 
[2026-01-09 14:06:27] 2026-01-09 13:05:49,492 | INFO     | job summary report
[2026-01-09 14:06:27] 2026-01-09 13:05:49,492 | INFO     | --------------------------------------------------
[2026-01-09 14:06:27] 2026-01-09 13:05:49,492 | INFO     | PanDA job id: 6963165979
[2026-01-09 14:06:27] 2026-01-09 13:05:49,492 | INFO     | task id: 47898826
[2026-01-09 14:06:27] 2026-01-09 13:05:49,492 | INFO     | errors: (none)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,492 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | pilot state: finished 
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | transexitcode: 0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | exeerrorcode: 0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | exeerrordiag: 
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | exitcode: 0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | exitmsg: OK
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | cpuconsumptiontime: 78896 s
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | nevents: 400
[2026-01-09 14:06:27] 2026-01-09 13:05:49,493 | INFO     | neventsw: 0
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | pid: 25640
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | pgrp: 25640
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | corecount: 8
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | event service: False
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | sizes: {0: 2283971, 1: 2283999, 7: 2284261, 12: 2284289, 10454: 2312916, 10456: 2321914, 10459: 2322098, 10466: 2322356}
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | --------------------------------------------------
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | 
[2026-01-09 14:06:27] 2026-01-09 13:05:49,494 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-09 14:06:27] 2026-01-09 13:05:49,521 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,521 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,521 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,521 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,522 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,522 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,522 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,522 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,522 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,524 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:06:27] 2026-01-09 13:05:49,524 | INFO     | job 6963165979 has completed (purged errors)
[2026-01-09 14:06:27] 2026-01-09 13:05:49,524 | INFO     | overall cleanup function is called
[2026-01-09 14:06:27] 2026-01-09 13:05:50,532 | INFO     | --- collectZombieJob: --- 10, [25640]
[2026-01-09 14:06:27] 2026-01-09 13:05:50,533 | INFO     | zombie collector waiting for pid 25640
[2026-01-09 14:06:27] 2026-01-09 13:05:50,533 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:06:27] 2026-01-09 13:05:50,533 | INFO     | collected zombie processes
[2026-01-09 14:06:27] 2026-01-09 13:05:50,533 | INFO     | will attempt to kill all subprocesses of pid=25640
[2026-01-09 14:06:27] 2026-01-09 13:05:50,600 | INFO     | process IDs to be killed: [25640] (in reverse order)
[2026-01-09 14:06:27] 2026-01-09 13:05:50,666 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:06:27] 2026-01-09 13:05:50,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:06:27] 2026-01-09 13:05:50,668 | INFO     | did not find any defunct processes belonging to 25640
[2026-01-09 14:06:27] 2026-01-09 13:05:50,670 | INFO     | did not find any defunct processes belonging to 25640
[2026-01-09 14:06:27] 2026-01-09 13:05:50,670 | INFO     | ready for new job
[2026-01-09 14:06:27] 2026-01-09 13:05:50,670 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:06:27] 2026-01-09 13:05:50,672 | INFO     | ***************************************
[2026-01-09 14:06:27] 2026-01-09 13:05:50,672 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:06:27] 2026-01-09 13:05:50,672 | INFO     | ***************************************
[2026-01-09 14:06:27] 2026-01-09 13:05:50,673 | INFO     | 
[2026-01-09 14:06:27] 2026-01-09 13:05:50,673 | INFO     | pilot is running in a VM
[2026-01-09 14:06:27] 2026-01-09 13:05:50,673 | INFO     | architecture information:
[2026-01-09 14:06:27] 2026-01-09 13:05:50,674 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:06:27] 2026-01-09 13:05:50,700 | INFO     | cat /etc/os-release:
[2026-01-09 14:06:27] NAME="CentOS Linux"
[2026-01-09 14:06:27] VERSION="7 (Core)"
[2026-01-09 14:06:27] ID="centos"
[2026-01-09 14:06:27] ID_LIKE="rhel fedora"
[2026-01-09 14:06:27] VERSION_ID="7"
[2026-01-09 14:06:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:06:27] ANSI_COLOR="0;31"
[2026-01-09 14:06:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:06:27] HOME_URL="https://www.centos.org/"
[2026-01-09 14:06:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:06:27] 
[2026-01-09 14:06:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:06:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:06:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:06:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:06:27] 
[2026-01-09 14:06:27] 2026-01-09 13:05:50,701 | INFO     | ***************************************
[2026-01-09 14:06:27] 2026-01-09 13:05:51,204 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-09 14:06:27] 2026-01-09 13:05:51,236 | INFO     | sufficient remaining disk space (498130223104 B)
[2026-01-09 14:06:27] 2026-01-09 13:05:51,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:06:27] 2026-01-09 13:05:51,236 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:06:27] 2026-01-09 13:05:51,237 | INFO     | update_server=False
[2026-01-09 14:06:27] 2026-01-09 13:05:51,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:06:27] 2026-01-09 13:05:51,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:06:27] 2026-01-09 13:05:51,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:06:27] 2026-01-09 13:05:51,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:06:27] 2026-01-09 13:05:51,238 | INFO     | aborting loop
[2026-01-09 14:06:27] 2026-01-09 13:05:51,282 | INFO     | all data control threads have been joined
[2026-01-09 14:06:27] 2026-01-09 13:05:51,655 | INFO     | all payload control threads have been joined
[2026-01-09 14:06:27] 2026-01-09 13:05:51,663 | INFO     | all job control threads have been joined
[2026-01-09 14:06:27] 2026-01-09 13:05:52,242 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,244 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,244 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,262 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,288 | INFO     | [data] control thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,535 | INFO     | [job] validate thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,661 | INFO     | [payload] control thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,668 | INFO     | [job] control thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,782 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,842 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,849 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,929 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:52,930 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:53,026 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:06:27] 2026-01-09 13:05:53,243 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:53,829 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:05:57,033 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:06:27] 2026-01-09 13:06:21,458 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:06:27] 2026-01-09 13:06:22,216 | INFO     | PID=19192 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 14:06:27] 2026-01-09 13:06:22,217 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:06:27] 2026-01-09 13:06:22,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:06:27] 2026-01-09 13:06:22,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:06:27] 2026-01-09 13:06:22,468 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393085896512)>', '<ExcThread(monitor, started 140392632653568)>']
[2026-01-09 14:06:27] 2026-01-09 13:06:23,222 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:06:27] 2026-01-09 13:06:23,223 | INFO     | [monitor] control thread has ended
[2026-01-09 14:06:27] 2026-01-09 13:06:27,486 | INFO     | all workflow threads have been joined
[2026-01-09 14:06:27] 2026-01-09 13:06:27,486 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:06:27] 2026-01-09 13:06:27,486 | INFO     | traces error code: 0
[2026-01-09 14:06:27] 2026-01-09 13:06:27,487 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:06:27] 2026-01-09 13:06:27,637 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:06:27] 2026-01-09 13:06:27,644 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:06:27] 2026-01-09 13:06:27,649 [wrapper] pilotpid: 19192
[2026-01-09 14:06:27] 2026-01-09 13:06:27,653 [wrapper] Pilot exit status: 0
[2026-01-09 14:06:27] 2026-01-09 13:06:27,670 [wrapper] pandaids: 6963165979
[2026-01-09 14:06:27] 2026-01-09 13:06:27,715 [wrapper] cleanup supervisor_pilot 10914 19193
[2026-01-09 14:06:27] 2026-01-09 13:06:27,721 [wrapper] Test setup, not cleaning
[2026-01-09 14:06:27] 2026-01-09 13:06:27,725 [wrapper] apfmon messages muted
[2026-01-09 14:06:27] 2026-01-09 13:06:27,729 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:06:27] 2026-01-09 13:06:27,732 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:06:27]  *** Error codes and diagnostics ***
[2026-01-09 14:06:27]     "exeErrorCode": 0,
[2026-01-09 14:06:27]     "exeErrorDiag": "",
[2026-01-09 14:06:27]     "pilotErrorCode": 0,
[2026-01-09 14:06:27]     "pilotErrorDiag": "",
[2026-01-09 14:06:27]  *** Listing of results directory ***
[2026-01-09 14:06:27] total 443328
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 14:06:27] -rwx------. 1 boinc boinc     36322 Jan  9 01:59 runpilot2-wrapper.sh
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:02 queuedata.json
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc       100 Jan  9 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:06:27] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 11:10 run_atlas
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc       105 Jan  9 11:10 job.xml
[2026-01-09 14:06:27] -rw-r--r--. 2 boinc boinc 224522922 Jan  9 11:10 EVNT.47898824._001359.pool.root.1
[2026-01-09 14:06:27] -rw-r--r--. 2 boinc boinc     15847 Jan  9 11:10 start_atlas.sh
[2026-01-09 14:06:27] drwxrwx--x. 2 boinc boinc        68 Jan  9 11:10 shared
[2026-01-09 14:06:27] -rw-r--r--. 2 boinc boinc    592403 Jan  9 11:10 input.tar.gz
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc      6390 Jan  9 11:10 init_data.xml
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc         0 Jan  9 11:10 boinc_lockfile
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc      2520 Jan  9 11:10 pandaJob.out
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc    989751 Jan  9 11:11 agis_schedconf.cvmfs.json
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc   1516240 Jan  9 11:11 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:06:27] drwx------. 5 boinc boinc      4096 Jan  9 11:11 pilot3
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc 221917597 Jan  9 14:04 HITS.47898826._035092.pool.root.1
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc       531 Jan  9 14:05 boinc_task_state.xml
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc      1016 Jan  9 14:05 memory_monitor_summary.json
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc    411501 Jan  9 14:05 log.47898826._035092.job.log.tgz.1
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc      7771 Jan  9 14:05 heartbeat.json
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc      8192 Jan  9 14:06 boinc_mmap_file
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc        28 Jan  9 14:06 wrapper_checkpoint.txt
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc        95 Jan  9 14:06 pilot_heartbeat.json
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc      4809 Jan  9 14:06 pilotlog.txt
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc   1397526 Jan  9 14:06 log.47898826._035092.job.log.1
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc       357 Jan  9 14:06 output.list
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc       620 Jan  9 14:06 runtime_log
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc   1832960 Jan  9 14:06 result.tar.gz
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc       655 Jan  9 14:06 rZLNDmM1Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmtzlKDmOViZDm.diag
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc      8817 Jan  9 14:06 runtime_log.err
[2026-01-09 14:06:27] -rw-r--r--. 1 boinc boinc     20764 Jan  9 14:06 stderr.txt
[2026-01-09 14:06:27] HITS file was successfully produced:
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc 221917597 Jan  9 14:04 shared/HITS.pool.root.1
[2026-01-09 14:06:27]  *** Contents of shared directory: ***
[2026-01-09 14:06:27] total 438372
[2026-01-09 14:06:27] -rw-r--r--. 2 boinc boinc 224522922 Jan  9 11:10 ATLAS.root_0
[2026-01-09 14:06:27] -rw-r--r--. 2 boinc boinc     15847 Jan  9 11:10 start_atlas.sh
[2026-01-09 14:06:27] -rw-r--r--. 2 boinc boinc    592403 Jan  9 11:10 input.tar.gz
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc 221917597 Jan  9 14:04 HITS.pool.root.1
[2026-01-09 14:06:27] -rw-------. 1 boinc boinc   1832960 Jan  9 14:06 result.tar.gz
14:06:29 (15463): run_atlas exited; CPU time 78967.107512
14:06:29 (15463): called boinc_finish(0)

</stderr_txt>
]]>

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