Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:58:05 (17579): wrapper (7.7.26015): starting
10:58:05 (17579): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:58:05] Arguments: --nthreads 8
[2026-01-09 10:58:05] Threads: 8
[2026-01-09 10:58:05] Checking for CVMFS
[2026-01-09 10:58:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:58:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:58:05] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:58:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:58:05] 2.11.2.0 15680 35264 98964 154938 2 56 17447033 25165825 0 130560 0 15873905 99.799 11110524 3100 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 10:58:05] CVMFS is ok
[2026-01-09 10:58:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:58:05] Checking for apptainer binary...
[2026-01-09 10:58:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:58:05] Running /usr/bin/apptainer --version
[2026-01-09 10:58:05] apptainer version 1.3.2-1.el7
[2026-01-09 10:58:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:58:07] cg-vwn486.simple-grid.lan
[2026-01-09 10:58:07] apptainer works
[2026-01-09 10:58:07] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:58:07] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:58:07] Starting ATLAS job with PandaID=6963165593
[2026-01-09 10:58:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:33:45]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:33:45] 2026-01-09 12:32:49,233 | INFO     | time since job start (9266s) is within the limit (349056.0s)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,155 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 13:33:45] 2026-01-09 12:32:50,156 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 13:33:45] 2026-01-09 12:32:50,158 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-6963165593/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,159 | INFO     | extracted standard info from prmon json
[2026-01-09 13:33:45] 2026-01-09 12:32:50,159 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:33:45] 2026-01-09 12:32:50,159 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:33:45] 2026-01-09 12:32:50,159 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:33:45] 2026-01-09 12:32:50,159 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:33:45] 2026-01-09 12:32:50,163 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:33:45] 2026-01-09 12:32:50,163 | INFO     | sum of square deviations: 1088905998.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,164 | INFO     | sum of deviations: 3797746418.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,164 | INFO     | mean x: 1767957340.5
[2026-01-09 13:33:45] 2026-01-09 12:32:50,164 | INFO     | mean y: 2477599.7763157897
[2026-01-09 13:33:45] 2026-01-09 12:32:50,165 | INFO     | intersect: -6163576834.1167755
[2026-01-09 13:33:45] 2026-01-09 12:32:50,165 | INFO     | chi2: 2.304939385461693
[2026-01-09 13:33:45] 2026-01-09 12:32:50,165 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,166 | INFO     | sum of deviations: 13502068607.000002
[2026-01-09 13:33:45] 2026-01-09 12:32:50,166 | INFO     | mean x: 1767957188.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,166 | INFO     | mean y: 2491441.9523809524
[2026-01-09 13:33:45] 2026-01-09 12:32:50,167 | INFO     | intersect: -24233552131.94246
[2026-01-09 13:33:45] 2026-01-09 12:32:50,167 | INFO     | chi2: 1.5413028727645641
[2026-01-09 13:33:45] 2026-01-09 12:32:50,167 | INFO     | current chi2=1.5413028727645641 (change=33.13043794182761 %)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,167 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 13:33:45] 2026-01-09 12:32:50,168 | INFO     | sum of deviations: 12980834495.499994
[2026-01-09 13:33:45] 2026-01-09 12:32:50,168 | INFO     | mean x: 1767957035.5
[2026-01-09 13:33:45] 2026-01-09 12:32:50,169 | INFO     | mean y: 2490623.3028169014
[2026-01-09 13:33:45] 2026-01-09 12:32:50,169 | INFO     | intersect: -25847024487.109093
[2026-01-09 13:33:45] 2026-01-09 12:32:50,169 | INFO     | chi2: 1.5432310622285752
[2026-01-09 13:33:45] 2026-01-09 12:32:50,169 | INFO     | current chi2=1.5432310622285752 (change=-0.12510126971687088 %)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,169 | INFO     | right removable region: 141
[2026-01-09 13:33:45] 2026-01-09 12:32:50,170 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,171 | INFO     | sum of deviations: -18212317197.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,171 | INFO     | mean x: 1767957493.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,171 | INFO     | mean y: 2509365.8571428573
[2026-01-09 13:33:45] 2026-01-09 12:32:50,171 | INFO     | intersect: 32693395641.36019
[2026-01-09 13:33:45] 2026-01-09 12:32:50,171 | INFO     | chi2: 0.8884426247897481
[2026-01-09 13:33:45] 2026-01-09 12:32:50,171 | INFO     | current chi2=0.8884426247897481 (change=61.45483779775025 %)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,172 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 13:33:45] 2026-01-09 12:32:50,173 | INFO     | sum of deviations: -14832036631.5
[2026-01-09 13:33:45] 2026-01-09 12:32:50,173 | INFO     | mean x: 1767957645.5
[2026-01-09 13:33:45] 2026-01-09 12:32:50,173 | INFO     | mean y: 2503989.7816901407
[2026-01-09 13:33:45] 2026-01-09 12:32:50,173 | INFO     | intersect: 29538439252.05412
[2026-01-09 13:33:45] 2026-01-09 12:32:50,173 | INFO     | chi2: 0.8694211222253222
[2026-01-09 13:33:45] 2026-01-09 12:32:50,173 | INFO     | current chi2=0.8694211222253222 (change=2.1409939183104143 %)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,173 | INFO     | left removable region: 20
[2026-01-09 13:33:45] 2026-01-09 12:32:50,174 | INFO     | sum of square deviations: 549294020.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,174 | INFO     | sum of deviations: 2492638608.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,175 | INFO     | mean x: 1767957615.0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,175 | INFO     | mean y: 2504703.47107438
[2026-01-09 13:33:45] 2026-01-09 12:32:50,175 | INFO     | intersect: -8020301385.800752
[2026-01-09 13:33:45] 2026-01-09 12:32:50,175 | INFO     | chi2: 0.00027302826828620253
[2026-01-09 13:33:45] 2026-01-09 12:32:50,175 | INFO     | current memory leak: 4.54 B/s (using 121 data points, chi2=0.00)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,176 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,176 | INFO     | ..............................
[2026-01-09 13:33:45] 2026-01-09 12:32:50,176 | INFO     | . Timing measurements:
[2026-01-09 13:33:45] 2026-01-09 12:32:50,176 | INFO     | . get job = 0 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,177 | INFO     | . initial setup = 2 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,177 | INFO     | . payload setup = 7 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,177 | INFO     | . stage-in = 0 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,177 | INFO     | . payload execution = 9229 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,177 | INFO     | . stage-out = 0 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,177 | INFO     | . log creation = 0 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,177 | INFO     | ..............................
[2026-01-09 13:33:45] 2026-01-09 12:32:50,297 | INFO     | 
[2026-01-09 13:33:45] 2026-01-09 12:32:50,298 | INFO     | job summary report
[2026-01-09 13:33:45] 2026-01-09 12:32:50,298 | INFO     | --------------------------------------------------
[2026-01-09 13:33:45] 2026-01-09 12:32:50,298 | INFO     | PanDA job id: 6963165593
[2026-01-09 13:33:45] 2026-01-09 12:32:50,298 | INFO     | task id: 47898826
[2026-01-09 13:33:45] 2026-01-09 12:32:50,298 | INFO     | errors: (none)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,298 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:33:45] 2026-01-09 12:32:50,298 | INFO     | pilot state: finished 
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | transexitcode: 0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | exeerrorcode: 0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | exeerrordiag: 
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | exitcode: 0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | exitmsg: OK
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | cpuconsumptiontime: 69721 s
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | nevents: 400
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | neventsw: 0
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | pid: 27755
[2026-01-09 13:33:45] 2026-01-09 12:32:50,299 | INFO     | pgrp: 27755
[2026-01-09 13:33:45] 2026-01-09 12:32:50,300 | INFO     | corecount: 8
[2026-01-09 13:33:45] 2026-01-09 12:32:50,300 | INFO     | event service: False
[2026-01-09 13:33:45] 2026-01-09 12:32:50,300 | INFO     | sizes: {0: 2283801, 1: 2284000, 6: 2284262, 12: 2284290, 9240: 2312198, 9241: 2321382, 9250: 2321520}
[2026-01-09 13:33:45] 2026-01-09 12:32:50,300 | INFO     | --------------------------------------------------
[2026-01-09 13:33:45] 2026-01-09 12:32:50,300 | INFO     | 
[2026-01-09 13:33:45] 2026-01-09 12:32:50,300 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2026-01-09 13:33:45] 2026-01-09 12:32:50,342 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,344 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,345 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,345 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:33:45] 2026-01-09 12:32:50,345 | INFO     | job 6963165593 has completed (purged errors)
[2026-01-09 13:33:45] 2026-01-09 12:32:50,345 | INFO     | overall cleanup function is called
[2026-01-09 13:33:45] 2026-01-09 12:32:51,353 | INFO     | --- collectZombieJob: --- 10, [27755]
[2026-01-09 13:33:45] 2026-01-09 12:32:51,353 | INFO     | zombie collector waiting for pid 27755
[2026-01-09 13:33:45] 2026-01-09 12:32:51,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:33:45] 2026-01-09 12:32:51,354 | INFO     | collected zombie processes
[2026-01-09 13:33:45] 2026-01-09 12:32:51,354 | INFO     | will attempt to kill all subprocesses of pid=27755
[2026-01-09 13:33:45] 2026-01-09 12:32:51,417 | INFO     | process IDs to be killed: [27755] (in reverse order)
[2026-01-09 13:33:45] 2026-01-09 12:32:51,482 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:33:45] 2026-01-09 12:32:51,482 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:33:45] 2026-01-09 12:32:51,484 | INFO     | did not find any defunct processes belonging to 27755
[2026-01-09 13:33:45] 2026-01-09 12:32:51,486 | INFO     | did not find any defunct processes belonging to 27755
[2026-01-09 13:33:45] 2026-01-09 12:32:51,486 | INFO     | ready for new job
[2026-01-09 13:33:45] 2026-01-09 12:32:51,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:33:45] 2026-01-09 12:32:51,488 | INFO     | ***************************************
[2026-01-09 13:33:45] 2026-01-09 12:32:51,488 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:33:45] 2026-01-09 12:32:51,488 | INFO     | ***************************************
[2026-01-09 13:33:45] 2026-01-09 12:32:51,489 | INFO     | 
[2026-01-09 13:33:45] 2026-01-09 12:32:51,489 | INFO     | pilot is running in a VM
[2026-01-09 13:33:45] 2026-01-09 12:32:51,489 | INFO     | architecture information:
[2026-01-09 13:33:45] 2026-01-09 12:32:51,490 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:33:45] 2026-01-09 12:32:51,509 | INFO     | cat /etc/os-release:
[2026-01-09 13:33:45] NAME="CentOS Linux"
[2026-01-09 13:33:45] VERSION="7 (Core)"
[2026-01-09 13:33:45] ID="centos"
[2026-01-09 13:33:45] ID_LIKE="rhel fedora"
[2026-01-09 13:33:45] VERSION_ID="7"
[2026-01-09 13:33:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:33:45] ANSI_COLOR="0;31"
[2026-01-09 13:33:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:33:45] HOME_URL="https://www.centos.org/"
[2026-01-09 13:33:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:33:45] 
[2026-01-09 13:33:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:33:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:33:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:33:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:33:45] 
[2026-01-09 13:33:45] 2026-01-09 12:32:51,509 | INFO     | ***************************************
[2026-01-09 13:33:45] 2026-01-09 12:32:52,012 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2026-01-09 13:33:45] 2026-01-09 12:32:52,033 | INFO     | sufficient remaining disk space (498273878016 B)
[2026-01-09 13:33:45] 2026-01-09 12:32:52,033 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:33:45] 2026-01-09 12:32:52,033 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:33:45] 2026-01-09 12:32:52,033 | INFO     | update_server=False
[2026-01-09 13:33:45] 2026-01-09 12:32:52,034 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:33:45] 2026-01-09 12:32:52,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:33:45] 2026-01-09 12:32:52,034 | INFO     | aborting loop
[2026-01-09 13:33:45] 2026-01-09 12:32:52,034 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:33:45] 2026-01-09 12:32:52,035 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:33:45] 2026-01-09 12:32:52,035 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:33:45] 2026-01-09 12:32:52,077 | INFO     | all job control threads have been joined
[2026-01-09 13:33:45] 2026-01-09 12:32:52,269 | INFO     | all data control threads have been joined
[2026-01-09 13:33:45] 2026-01-09 12:32:52,599 | INFO     | all payload control threads have been joined
[2026-01-09 13:33:45] 2026-01-09 12:32:53,039 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,040 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,041 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,063 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,083 | INFO     | [job] control thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,251 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,258 | INFO     | [job] validate thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,273 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,275 | INFO     | [data] control thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,605 | INFO     | [payload] control thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:53,849 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:54,033 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:54,037 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:54,345 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:32:56,042 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:33:02,173 | INFO     | job.realtimelogging is not enabled
[2026-01-09 13:33:45] 2026-01-09 12:33:03,179 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:33:45] 2026-01-09 12:33:22,326 | INFO     | PID=21309 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:33:45] 2026-01-09 12:33:22,327 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:33:45] 2026-01-09 12:33:22,328 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:33:45] 2026-01-09 12:33:22,328 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:33:45] 2026-01-09 12:33:38,246 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:33:45] 2026-01-09 12:33:39,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917611292480)>', '<ExcThread(monitor, started 139917308962560)>']
[2026-01-09 13:33:45] 2026-01-09 12:33:40,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:33:45] 2026-01-09 12:33:40,416 | INFO     | [monitor] control thread has ended
[2026-01-09 13:33:45] 2026-01-09 12:33:44,687 | INFO     | all workflow threads have been joined
[2026-01-09 13:33:45] 2026-01-09 12:33:44,687 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:33:45] 2026-01-09 12:33:44,688 | INFO     | traces error code: 0
[2026-01-09 13:33:45] 2026-01-09 12:33:44,688 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:33:45] 2026-01-09 12:33:44,826 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:33:45] 2026-01-09 12:33:44,834 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:33:45] 2026-01-09 12:33:44,841 [wrapper] pilotpid: 21309
[2026-01-09 13:33:45] 2026-01-09 12:33:44,845 [wrapper] Pilot exit status: 0
[2026-01-09 13:33:45] 2026-01-09 12:33:44,871 [wrapper] pandaids: 6963165593
[2026-01-09 13:33:45] 2026-01-09 12:33:44,911 [wrapper] cleanup supervisor_pilot 12135 21310
[2026-01-09 13:33:45] 2026-01-09 12:33:44,915 [wrapper] Test setup, not cleaning
[2026-01-09 13:33:45] 2026-01-09 12:33:44,920 [wrapper] apfmon messages muted
[2026-01-09 13:33:45] 2026-01-09 12:33:44,923 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:33:45] 2026-01-09 12:33:44,927 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:33:45]  *** Error codes and diagnostics ***
[2026-01-09 13:33:45]     "exeErrorCode": 0,
[2026-01-09 13:33:45]     "exeErrorDiag": "",
[2026-01-09 13:33:45]     "pilotErrorCode": 0,
[2026-01-09 13:33:45]     "pilotErrorDiag": "",
[2026-01-09 13:33:45]  *** Listing of results directory ***
[2026-01-09 13:33:45] total 447296
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 13:33:45] -rwx------. 1 boinc boinc     36322 Jan  9 01:59 runpilot2-wrapper.sh
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:02 queuedata.json
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc       100 Jan  9 10:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:33:45] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 10:58 run_atlas
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc       105 Jan  9 10:58 job.xml
[2026-01-09 13:33:45] -rw-r--r--. 2 boinc boinc 226913115 Jan  9 10:58 EVNT.47898824._001348.pool.root.1
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc      6389 Jan  9 10:58 init_data.xml
[2026-01-09 13:33:45] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:58 start_atlas.sh
[2026-01-09 13:33:45] drwxrwx--x. 2 boinc boinc        68 Jan  9 10:58 shared
[2026-01-09 13:33:45] -rw-r--r--. 2 boinc boinc    592400 Jan  9 10:58 input.tar.gz
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc         0 Jan  9 10:58 boinc_lockfile
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc      2520 Jan  9 10:58 pandaJob.out
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc    989751 Jan  9 10:58 agis_schedconf.cvmfs.json
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc   1516240 Jan  9 10:58 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:33:45] drwx------. 5 boinc boinc      4096 Jan  9 10:58 pilot3
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc 223957133 Jan  9 13:31 HITS.47898826._034812.pool.root.1
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc       530 Jan  9 13:32 boinc_task_state.xml
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc      1024 Jan  9 13:32 memory_monitor_summary.json
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc    386680 Jan  9 13:32 log.47898826._034812.job.log.tgz.1
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc      7763 Jan  9 13:32 heartbeat.json
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc        95 Jan  9 13:33 pilot_heartbeat.json
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc        27 Jan  9 13:33 wrapper_checkpoint.txt
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc      8192 Jan  9 13:33 boinc_mmap_file
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc      4882 Jan  9 13:33 pilotlog.txt
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc   1244746 Jan  9 13:33 log.47898826._034812.job.log.1
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc       357 Jan  9 13:33 output.list
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc       620 Jan  9 13:33 runtime_log
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc   1648640 Jan  9 13:33 result.tar.gz
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc      8832 Jan  9 13:33 runtime_log.err
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc       652 Jan  9 13:33 BouLDmM1Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlylKDmujLdZm.diag
[2026-01-09 13:33:45] -rw-r--r--. 1 boinc boinc     20698 Jan  9 13:33 stderr.txt
[2026-01-09 13:33:45] HITS file was successfully produced:
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc 223957133 Jan  9 13:31 shared/HITS.pool.root.1
[2026-01-09 13:33:45]  *** Contents of shared directory: ***
[2026-01-09 13:33:45] total 442516
[2026-01-09 13:33:45] -rw-r--r--. 2 boinc boinc 226913115 Jan  9 10:58 ATLAS.root_0
[2026-01-09 13:33:45] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:58 start_atlas.sh
[2026-01-09 13:33:45] -rw-r--r--. 2 boinc boinc    592400 Jan  9 10:58 input.tar.gz
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc 223957133 Jan  9 13:31 HITS.pool.root.1
[2026-01-09 13:33:45] -rw-------. 1 boinc boinc   1648640 Jan  9 13:33 result.tar.gz
13:33:46 (17579): run_atlas exited; CPU time 69781.834847
13:33:46 (17579): called boinc_finish(0)

</stderr_txt>
]]>

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