Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:21:48 (10205): wrapper (7.7.26015): starting
10:21:48 (10205): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:21:48] Arguments: --nthreads 8
[2026-01-09 10:21:48] Threads: 8
[2026-01-09 10:21:48] Checking for CVMFS
[2026-01-09 10:21:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:21:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:21:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:21:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:21:49] 2.11.2.0 24263 35229 121168 154938 3 56 14921803 25165824 0 130560 0 17336446 99.818 10838907 3268 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 10:21:49] CVMFS is ok
[2026-01-09 10:21:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:21:49] Checking for apptainer binary...
[2026-01-09 10:21:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:21:49] Running /usr/bin/apptainer --version
[2026-01-09 10:21:49] apptainer version 1.3.2-1.el7
[2026-01-09 10:21:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:21:50] cg-vwn484.simple-grid.lan
[2026-01-09 10:21:50] apptainer works
[2026-01-09 10:21:50] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:21:50] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:21:50] Starting ATLAS job with PandaID=6963163410
[2026-01-09 10:21:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:00:27]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:00:27] 2026-01-09 11:59:16,015 | INFO     | time since job start (9431s) is within the limit (349056.0s)
[2026-01-09 13:00:27] 2026-01-09 11:59:16,300 | INFO     | monitor loop #646: job 0:6963163410 is in state 'finished'
[2026-01-09 13:00:27] 2026-01-09 11:59:16,301 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:00:27] 2026-01-09 11:59:18,021 | INFO     | time since job start (9433s) is within the limit (349056.0s)
[2026-01-09 13:00:27] 2026-01-09 11:59:18,804 | INFO     | monitor loop #647: job 0:6963163410 is in state 'finished'
[2026-01-09 13:00:27] 2026-01-09 11:59:18,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:00:27] 2026-01-09 11:59:20,027 | INFO     | time since job start (9435s) is within the limit (349056.0s)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,117 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 13:00:27] 2026-01-09 11:59:21,118 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 13:00:27] 2026-01-09 11:59:21,120 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6963163410/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,121 | INFO     | extracted standard info from prmon json
[2026-01-09 13:00:27] 2026-01-09 11:59:21,121 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:00:27] 2026-01-09 11:59:21,121 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:00:27] 2026-01-09 11:59:21,121 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:00:27] 2026-01-09 11:59:21,121 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:00:27] 2026-01-09 11:59:21,125 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:00:27] 2026-01-09 11:59:21,125 | INFO     | sum of square deviations: 1132458442.5
[2026-01-09 13:00:27] 2026-01-09 11:59:21,126 | INFO     | sum of deviations: -1506683987.5000024
[2026-01-09 13:00:27] 2026-01-09 11:59:21,127 | INFO     | mean x: 1767955223.5
[2026-01-09 13:00:27] 2026-01-09 11:59:21,127 | INFO     | mean y: 2537693.6948051946
[2026-01-09 13:00:27] 2026-01-09 11:59:21,127 | INFO     | intersect: 2354720984.398153
[2026-01-09 13:00:27] 2026-01-09 11:59:21,127 | INFO     | chi2: 1.7307204812442876
[2026-01-09 13:00:27] 2026-01-09 11:59:21,127 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,128 | INFO     | sum of deviations: -943192064.9999982
[2026-01-09 13:00:27] 2026-01-09 11:59:21,129 | INFO     | mean x: 1767955071.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,129 | INFO     | mean y: 2538498.852348993
[2026-01-09 13:00:27] 2026-01-09 11:59:21,129 | INFO     | intersect: 1628288248.0525205
[2026-01-09 13:00:27] 2026-01-09 11:59:21,129 | INFO     | chi2: 1.7319018247642382
[2026-01-09 13:00:27] 2026-01-09 11:59:21,129 | INFO     | current chi2=1.7319018247642382 (change=-0.06825732593753478 %)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,130 | INFO     | right removable region: 148
[2026-01-09 13:00:27] 2026-01-09 11:59:21,130 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,131 | INFO     | sum of deviations: -25132575169.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,131 | INFO     | mean x: 1767955376.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,131 | INFO     | mean y: 2570935.946308725
[2026-01-09 13:00:27] 2026-01-09 11:59:21,131 | INFO     | intersect: 43322787827.95657
[2026-01-09 13:00:27] 2026-01-09 11:59:21,132 | INFO     | chi2: 0.22406763622737688
[2026-01-09 13:00:27] 2026-01-09 11:59:21,132 | INFO     | current chi2=0.22406763622737688 (change=87.05350525081408 %)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,132 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,133 | INFO     | sum of deviations: -28513504744.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,133 | INFO     | mean x: 1767955528.5
[2026-01-09 13:00:27] 2026-01-09 11:59:21,133 | INFO     | mean y: 2576100.375
[2026-01-09 13:00:27] 2026-01-09 11:59:21,133 | INFO     | intersect: 54449955637.26159
[2026-01-09 13:00:27] 2026-01-09 11:59:21,134 | INFO     | chi2: 0.16957706434309244
[2026-01-09 13:00:27] 2026-01-09 11:59:21,134 | INFO     | current chi2=0.16957706434309244 (change=24.3188051615759 %)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,134 | INFO     | left removable region: 20
[2026-01-09 13:00:27] 2026-01-09 11:59:21,134 | INFO     | sum of square deviations: 650252192.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,135 | INFO     | sum of deviations: -24402941359.0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,135 | INFO     | mean x: 1767955650.5
[2026-01-09 13:00:27] 2026-01-09 11:59:21,135 | INFO     | mean y: 2573845.3125
[2026-01-09 13:00:27] 2026-01-09 11:59:21,136 | INFO     | intersect: 66351166891.599686
[2026-01-09 13:00:27] 2026-01-09 11:59:21,136 | INFO     | chi2: 0.1277763701050073
[2026-01-09 13:00:27] 2026-01-09 11:59:21,136 | INFO     | current memory leak: -37.53 B/s (using 128 data points, chi2=0.13)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | ..............................
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | . Timing measurements:
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | . get job = 0 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | . initial setup = 1 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | . payload setup = 7 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | . stage-in = 0 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,137 | INFO     | . payload execution = 9394 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,138 | INFO     | . stage-out = 1 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,138 | INFO     | . log creation = 0 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,138 | INFO     | ..............................
[2026-01-09 13:00:27] 2026-01-09 11:59:21,691 | INFO     | 
[2026-01-09 13:00:27] 2026-01-09 11:59:21,692 | INFO     | job summary report
[2026-01-09 13:00:27] 2026-01-09 11:59:21,692 | INFO     | --------------------------------------------------
[2026-01-09 13:00:27] 2026-01-09 11:59:21,692 | INFO     | PanDA job id: 6963163410
[2026-01-09 13:00:27] 2026-01-09 11:59:21,692 | INFO     | task id: 47898826
[2026-01-09 13:00:27] 2026-01-09 11:59:21,692 | INFO     | errors: (none)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,692 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | pilot state: finished 
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | transexitcode: 0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | exeerrorcode: 0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | exeerrordiag: 
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | exitcode: 0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | exitmsg: OK
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | cpuconsumptiontime: 68513 s
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | nevents: 400
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | neventsw: 0
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | pid: 20378
[2026-01-09 13:00:27] 2026-01-09 11:59:21,693 | INFO     | pgrp: 20378
[2026-01-09 13:00:27] 2026-01-09 11:59:21,694 | INFO     | corecount: 8
[2026-01-09 13:00:27] 2026-01-09 11:59:21,694 | INFO     | event service: False
[2026-01-09 13:00:27] 2026-01-09 11:59:21,694 | INFO     | sizes: {0: 2283972, 1: 2284000, 6: 2284262, 11: 2284290, 9405: 2312254, 9408: 2321254, 9409: 2321438, 9420: 2321820}
[2026-01-09 13:00:27] 2026-01-09 11:59:21,694 | INFO     | --------------------------------------------------
[2026-01-09 13:00:27] 2026-01-09 11:59:21,694 | INFO     | 
[2026-01-09 13:00:27] 2026-01-09 11:59:21,694 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-01-09 13:00:27] 2026-01-09 11:59:21,729 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,729 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,729 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,729 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,730 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | job 6963163410 has completed (purged errors)
[2026-01-09 13:00:27] 2026-01-09 11:59:21,731 | INFO     | overall cleanup function is called
[2026-01-09 13:00:27] 2026-01-09 11:59:22,738 | INFO     | --- collectZombieJob: --- 10, [20378]
[2026-01-09 13:00:27] 2026-01-09 11:59:22,738 | INFO     | zombie collector waiting for pid 20378
[2026-01-09 13:00:27] 2026-01-09 11:59:22,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:00:27] 2026-01-09 11:59:22,738 | INFO     | collected zombie processes
[2026-01-09 13:00:27] 2026-01-09 11:59:22,739 | INFO     | will attempt to kill all subprocesses of pid=20378
[2026-01-09 13:00:27] 2026-01-09 11:59:22,801 | INFO     | process IDs to be killed: [20378] (in reverse order)
[2026-01-09 13:00:27] 2026-01-09 11:59:22,857 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:00:27] 2026-01-09 11:59:22,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:00:27] 2026-01-09 11:59:22,860 | INFO     | did not find any defunct processes belonging to 20378
[2026-01-09 13:00:27] 2026-01-09 11:59:22,861 | INFO     | did not find any defunct processes belonging to 20378
[2026-01-09 13:00:27] 2026-01-09 11:59:22,861 | INFO     | ready for new job
[2026-01-09 13:00:27] 2026-01-09 11:59:22,862 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:00:27] 2026-01-09 11:59:22,863 | INFO     | ***************************************
[2026-01-09 13:00:27] 2026-01-09 11:59:22,863 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:00:27] 2026-01-09 11:59:22,864 | INFO     | ***************************************
[2026-01-09 13:00:27] 2026-01-09 11:59:22,864 | INFO     | 
[2026-01-09 13:00:27] 2026-01-09 11:59:22,864 | INFO     | pilot is running in a VM
[2026-01-09 13:00:27] 2026-01-09 11:59:22,864 | INFO     | architecture information:
[2026-01-09 13:00:27] 2026-01-09 11:59:22,865 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:00:27] 2026-01-09 11:59:22,882 | INFO     | cat /etc/os-release:
[2026-01-09 13:00:27] NAME="CentOS Linux"
[2026-01-09 13:00:27] VERSION="7 (Core)"
[2026-01-09 13:00:27] ID="centos"
[2026-01-09 13:00:27] ID_LIKE="rhel fedora"
[2026-01-09 13:00:27] VERSION_ID="7"
[2026-01-09 13:00:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:00:27] ANSI_COLOR="0;31"
[2026-01-09 13:00:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:00:27] HOME_URL="https://www.centos.org/"
[2026-01-09 13:00:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:00:27] 
[2026-01-09 13:00:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:00:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:00:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:00:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:00:27] 
[2026-01-09 13:00:27] 2026-01-09 11:59:22,883 | INFO     | ***************************************
[2026-01-09 13:00:27] 2026-01-09 11:59:23,385 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-01-09 13:00:27] 2026-01-09 11:59:23,411 | INFO     | sufficient remaining disk space (498289606656 B)
[2026-01-09 13:00:27] 2026-01-09 11:59:23,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:00:27] 2026-01-09 11:59:23,412 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:00:27] 2026-01-09 11:59:23,412 | INFO     | update_server=False
[2026-01-09 13:00:27] 2026-01-09 11:59:23,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:00:27] 2026-01-09 11:59:23,447 | INFO     | all data control threads have been joined
[2026-01-09 13:00:27] 2026-01-09 11:59:23,685 | INFO     | all job control threads have been joined
[2026-01-09 13:00:27] 2026-01-09 11:59:23,811 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 13:00:27] 2026-01-09 11:59:23,811 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 13:00:27] 2026-01-09 11:59:23,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:00:27] 2026-01-09 11:59:23,812 | INFO     | will abort loop
[2026-01-09 13:00:27] 2026-01-09 11:59:24,418 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:24,421 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:24,441 | INFO     | all payload control threads have been joined
[2026-01-09 13:00:27] 2026-01-09 11:59:24,453 | INFO     | [data] control thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:24,492 | INFO     | [job] validate thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:24,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:00:27] 2026-01-09 11:59:24,691 | INFO     | [job] control thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:24,790 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:24,817 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:24,999 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:25,115 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:25,447 | INFO     | [payload] control thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:25,501 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:25,676 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:00:27] 2026-01-09 11:59:25,701 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:25,806 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:26,259 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:00:27] 2026-01-09 11:59:26,695 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:27,264 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:29,682 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:00:27] 2026-01-09 11:59:53,124 | INFO     | PID=13947 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:00:27] 2026-01-09 11:59:53,125 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:00:27] 2026-01-09 11:59:53,125 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:00:27] 2026-01-09 11:59:53,125 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:00:27] 2026-01-09 12:00:20,447 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:00:27] 2026-01-09 12:00:22,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140522823182144)>', '<ExcThread(monitor, started 140522362480384)>']
[2026-01-09 13:00:27] 2026-01-09 12:00:22,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:00:27] 2026-01-09 12:00:22,275 | INFO     | [monitor] control thread has ended
[2026-01-09 13:00:27] 2026-01-09 12:00:27,152 | INFO     | all workflow threads have been joined
[2026-01-09 13:00:27] 2026-01-09 12:00:27,152 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:00:27] 2026-01-09 12:00:27,153 | INFO     | traces error code: 0
[2026-01-09 13:00:27] 2026-01-09 12:00:27,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:00:27] 2026-01-09 12:00:27,302 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:00:27] 2026-01-09 12:00:27,307 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:00:27] 2026-01-09 12:00:27,311 [wrapper] pilotpid: 13947
[2026-01-09 13:00:27] 2026-01-09 12:00:27,315 [wrapper] Pilot exit status: 0
[2026-01-09 13:00:27] 2026-01-09 12:00:27,338 [wrapper] pandaids: 6963163410
[2026-01-09 13:00:27] 2026-01-09 12:00:27,384 [wrapper] cleanup supervisor_pilot  4783 13948
[2026-01-09 13:00:27] 2026-01-09 12:00:27,390 [wrapper] Test setup, not cleaning
[2026-01-09 13:00:27] 2026-01-09 12:00:27,394 [wrapper] apfmon messages muted
[2026-01-09 13:00:27] 2026-01-09 12:00:27,398 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:00:27] 2026-01-09 12:00:27,402 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:00:27]  *** Error codes and diagnostics ***
[2026-01-09 13:00:27]     "exeErrorCode": 0,
[2026-01-09 13:00:27]     "exeErrorDiag": "",
[2026-01-09 13:00:27]     "pilotErrorCode": 0,
[2026-01-09 13:00:27]     "pilotErrorDiag": "",
[2026-01-09 13:00:27]  *** Listing of results directory ***
[2026-01-09 13:00:27] total 438180
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 13:00:27] -rwx------. 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:02 queuedata.json
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc       100 Jan  9 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:00:27] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 10:21 run_atlas
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc       105 Jan  9 10:21 job.xml
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc      6392 Jan  9 10:21 init_data.xml
[2026-01-09 13:00:27] -rw-r--r--. 2 boinc boinc 223026048 Jan  9 10:21 EVNT.47898824._001321.pool.root.1
[2026-01-09 13:00:27] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:21 start_atlas.sh
[2026-01-09 13:00:27] drwxrwx--x. 2 boinc boinc        68 Jan  9 10:21 shared
[2026-01-09 13:00:27] -rw-r--r--. 2 boinc boinc    592402 Jan  9 10:21 input.tar.gz
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc         0 Jan  9 10:21 boinc_lockfile
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc      2520 Jan  9 10:21 pandaJob.out
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc    989751 Jan  9 10:22 agis_schedconf.cvmfs.json
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc   1516240 Jan  9 10:22 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:00:27] drwx------. 5 boinc boinc      4096 Jan  9 10:22 pilot3
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc 218451416 Jan  9 12:58 HITS.47898826._034637.pool.root.1
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc        95 Jan  9 12:58 pilot_heartbeat.json
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc       530 Jan  9 12:59 boinc_task_state.xml
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc      1012 Jan  9 12:59 memory_monitor_summary.json
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc    390209 Jan  9 12:59 log.47898826._034637.job.log.tgz.1
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc      7775 Jan  9 12:59 heartbeat.json
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc        27 Jan  9 13:00 wrapper_checkpoint.txt
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc      8192 Jan  9 13:00 boinc_mmap_file
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc      4996 Jan  9 13:00 pilotlog.txt
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc   1270972 Jan  9 13:00 log.47898826._034637.job.log.1
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc       357 Jan  9 13:00 output.list
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc       620 Jan  9 13:00 runtime_log
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc   1679360 Jan  9 13:00 result.tar.gz
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc       652 Jan  9 13:00 SpRKDmB1Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZjgKDmDmjmgn.diag
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc      8832 Jan  9 13:00 runtime_log.err
[2026-01-09 13:00:27] -rw-r--r--. 1 boinc boinc     20947 Jan  9 13:00 stderr.txt
[2026-01-09 13:00:27] HITS file was successfully produced:
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc 218451416 Jan  9 12:58 shared/HITS.pool.root.1
[2026-01-09 13:00:27]  *** Contents of shared directory: ***
[2026-01-09 13:00:27] total 433368
[2026-01-09 13:00:27] -rw-r--r--. 2 boinc boinc 223026048 Jan  9 10:21 ATLAS.root_0
[2026-01-09 13:00:27] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:21 start_atlas.sh
[2026-01-09 13:00:27] -rw-r--r--. 2 boinc boinc    592402 Jan  9 10:21 input.tar.gz
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc 218451416 Jan  9 12:58 HITS.pool.root.1
[2026-01-09 13:00:27] -rw-------. 1 boinc boinc   1679360 Jan  9 13:00 result.tar.gz
13:00:29 (10205): run_atlas exited; CPU time 68570.770809
13:00:29 (10205): called boinc_finish(0)

</stderr_txt>
]]>

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