Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:08:04 (4187739): wrapper (7.7.26015): starting
17:08:04 (4187739): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 17:08:04] Arguments: --nthreads 4
[2026-01-09 17:08:04] Threads: 4
[2026-01-09 17:08:04] Checking for CVMFS
[2026-01-09 17:08:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:08:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:08:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:08:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:08:04] 2.9.2.0 3660082 1916 93360 154948 3 81 18440133 36864001 0 130560 0 1347944 99.990 69963 4892 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 17:08:04] CVMFS is ok
[2026-01-09 17:08:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:08:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:08:04] Further information can be found at the LHC@home message board.
[2026-01-09 17:08:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:08:04] Checking for apptainer binary...
[2026-01-09 17:08:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:08:04] Running /usr/bin/apptainer --version
[2026-01-09 17:08:04] apptainer version 1.4.1-1.1
[2026-01-09 17:08:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:08:04] madmaxA277
[2026-01-09 17:08:04] apptainer works
[2026-01-09 17:08:04] Set ATHENA_PROC_NUMBER=4
[2026-01-09 17:08:04] Set ATHENA_CORE_NUMBER=4
[2026-01-09 17:08:04] Starting ATLAS job with PandaID=6963162463
[2026-01-09 17:08:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:44:36]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:44:36] 2026-01-09 17:44:04,695 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,695 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,695 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | job 6963162463 has completed (purged errors)
[2026-01-09 18:44:36] 2026-01-09 17:44:04,696 | INFO     | overall cleanup function is called
[2026-01-09 18:44:36] 2026-01-09 17:44:05,703 | INFO     | --- collectZombieJob: --- 10, [4301]
[2026-01-09 18:44:36] 2026-01-09 17:44:05,703 | INFO     | zombie collector waiting for pid 4301
[2026-01-09 18:44:36] 2026-01-09 17:44:05,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:44:36] 2026-01-09 17:44:05,703 | INFO     | collected zombie processes
[2026-01-09 18:44:36] 2026-01-09 17:44:05,703 | INFO     | will attempt to kill all subprocesses of pid=4301
[2026-01-09 18:44:36] 2026-01-09 17:44:05,751 | INFO     | process IDs to be killed: [4301] (in reverse order)
[2026-01-09 18:44:36] 2026-01-09 17:44:05,783 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:44:36] 2026-01-09 17:44:05,784 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:44:36] 2026-01-09 17:44:05,786 | INFO     | did not find any defunct processes belonging to 4301
[2026-01-09 18:44:36] 2026-01-09 17:44:05,787 | INFO     | did not find any defunct processes belonging to 4301
[2026-01-09 18:44:36] 2026-01-09 17:44:05,787 | INFO     | ready for new job
[2026-01-09 18:44:36] 2026-01-09 17:44:05,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:44:36] 2026-01-09 17:44:05,788 | INFO     | ***************************************
[2026-01-09 18:44:36] 2026-01-09 17:44:05,788 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:44:36] 2026-01-09 17:44:05,788 | INFO     | ***************************************
[2026-01-09 18:44:36] 2026-01-09 17:44:05,788 | INFO     | 
[2026-01-09 18:44:36] 2026-01-09 17:44:05,789 | INFO     | architecture information:
[2026-01-09 18:44:36] 2026-01-09 17:44:05,789 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:44:36] 2026-01-09 17:44:05,802 | INFO     | cat /etc/os-release:
[2026-01-09 18:44:36] NAME="CentOS Linux"
[2026-01-09 18:44:36] VERSION="7 (Core)"
[2026-01-09 18:44:36] ID="centos"
[2026-01-09 18:44:36] ID_LIKE="rhel fedora"
[2026-01-09 18:44:36] VERSION_ID="7"
[2026-01-09 18:44:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:44:36] ANSI_COLOR="0;31"
[2026-01-09 18:44:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:44:36] HOME_URL="https://www.centos.org/"
[2026-01-09 18:44:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:44:36] 
[2026-01-09 18:44:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:44:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:44:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:44:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:44:36] 
[2026-01-09 18:44:36] 2026-01-09 17:44:05,802 | INFO     | ***************************************
[2026-01-09 18:44:36] 2026-01-09 17:44:06,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 18:44:36] 2026-01-09 17:44:06,324 | INFO     | sufficient remaining disk space (341326168064 B)
[2026-01-09 18:44:36] 2026-01-09 17:44:06,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:44:36] 2026-01-09 17:44:06,324 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:44:36] 2026-01-09 17:44:06,324 | INFO     | update_server=False
[2026-01-09 18:44:36] 2026-01-09 17:44:06,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:44:36] 2026-01-09 17:44:06,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:44:36] 2026-01-09 17:44:06,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:44:36] 2026-01-09 17:44:06,388 | INFO     | all data control threads have been joined
[2026-01-09 18:44:36] 2026-01-09 17:44:06,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:44:36] 2026-01-09 17:44:06,760 | INFO     | aborting loop
[2026-01-09 18:44:36] 2026-01-09 17:44:06,856 | INFO     | all payload control threads have been joined
[2026-01-09 18:44:36] 2026-01-09 17:44:07,330 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:07,330 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:07,394 | INFO     | [data] control thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:07,463 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:44:36] 2026-01-09 17:44:07,544 | INFO     | all job control threads have been joined
[2026-01-09 18:44:36] 2026-01-09 17:44:07,766 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:07,797 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:07,862 | INFO     | [payload] control thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:08,055 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:08,082 | INFO     | [job] validate thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:08,115 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:08,252 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:08,550 | INFO     | [job] control thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:08,562 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:08,768 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:09,466 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:10,331 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:16,763 | INFO     | job.realtimelogging is not enabled
[2026-01-09 18:44:36] 2026-01-09 17:44:17,769 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:44:36] 2026-01-09 17:44:18,962 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:44:36] 2026-01-09 17:44:20,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139863477118784)>', '<ExcThread(monitor, started 139862254548736)>']
[2026-01-09 18:44:36] 2026-01-09 17:44:25,781 | INFO     | all workflow threads have been joined
[2026-01-09 18:44:36] 2026-01-09 17:44:25,781 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:44:36] 2026-01-09 17:44:25,781 | INFO     | traces error code: 0
[2026-01-09 18:44:36] 2026-01-09 17:44:25,781 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:44:36] 2026-01-09 17:44:36,688 | INFO     | PID=4191538 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:44:36] 2026-01-09 17:44:36,689 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:44:36] 2026-01-09 17:44:36,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:44:36] 2026-01-09 17:44:36,689 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:44:36] 2026-01-09 17:44:36,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:44:36] 2026-01-09 17:44:36,689 | INFO     | [monitor] control thread has ended
[2026-01-09 18:44:36] 2026-01-09 17:44:36,763 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:44:36] 2026-01-09 17:44:36,767 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:44:36] 2026-01-09 17:44:36,770 [wrapper] pilotpid: 4191538
[2026-01-09 18:44:36] 2026-01-09 17:44:36,773 [wrapper] Pilot exit status: 0
[2026-01-09 18:44:36] 2026-01-09 17:44:36,783 [wrapper] pandaids: 6963162463
[2026-01-09 18:44:36] 2026-01-09 17:44:36,804 [wrapper] cleanup supervisor_pilot   16934 4191539
[2026-01-09 18:44:36] 2026-01-09 17:44:36,808 [wrapper] Test setup, not cleaning
[2026-01-09 18:44:36] 2026-01-09 17:44:36,811 [wrapper] apfmon messages muted
[2026-01-09 18:44:36] 2026-01-09 17:44:36,814 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:44:36] 2026-01-09 17:44:36,818 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:44:36]  *** Error codes and diagnostics ***
[2026-01-09 18:44:36]     "exeErrorCode": 0,
[2026-01-09 18:44:36]     "exeErrorDiag": "",
[2026-01-09 18:44:36]     "pilotErrorCode": 0,
[2026-01-09 18:44:36]     "pilotErrorDiag": "",
[2026-01-09 18:44:36]  *** Listing of results directory ***
[2026-01-09 18:44:36] total 439016
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 18:44:36] -rwx------ 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc       100 Jan  9 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:44:36] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 17:08 run_atlas
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc       105 Jan  9 17:08 job.xml
[2026-01-09 18:44:36] -rw-r--r-- 2 boinc boinc 225655563 Jan  9 17:08 EVNT.47898824._001299.pool.root.1
[2026-01-09 18:44:36] -rw-r--r-- 2 boinc boinc    592402 Jan  9 17:08 input.tar.gz
[2026-01-09 18:44:36] -rw-r--r-- 2 boinc boinc     15847 Jan  9 17:08 start_atlas.sh
[2026-01-09 18:44:36] drwxrwx--x 2 boinc boinc      4096 Jan  9 17:08 shared
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc         0 Jan  9 17:08 boinc_setup_complete
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc      6372 Jan  9 17:08 init_data.xml
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc         0 Jan  9 17:08 boinc_lockfile
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc      2520 Jan  9 17:08 pandaJob.out
[2026-01-09 18:44:36] -rw------- 1 boinc boinc    989377 Jan  9 17:08 agis_schedconf.cvmfs.json
[2026-01-09 18:44:36] -rw------- 1 boinc boinc   1516240 Jan  9 17:08 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:44:36] drwx------ 5 boinc boinc      4096 Jan  9 17:08 pilot3
[2026-01-09 18:44:36] -rw------- 1 boinc boinc 217779903 Jan  9 18:43 HITS.47898826._034084.pool.root.1
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc       529 Jan  9 18:43 boinc_task_state.xml
[2026-01-09 18:44:36] -rw------- 1 boinc boinc        95 Jan  9 18:43 pilot_heartbeat.json
[2026-01-09 18:44:36] -rw------- 1 boinc boinc      1018 Jan  9 18:43 memory_monitor_summary.json
[2026-01-09 18:44:36] -rw------- 1 boinc boinc    278445 Jan  9 18:43 log.47898826._034084.job.log.tgz.1
[2026-01-09 18:44:36] -rw------- 1 boinc boinc      7774 Jan  9 18:44 heartbeat.json
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc      8192 Jan  9 18:44 boinc_mmap_file
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc        27 Jan  9 18:44 wrapper_checkpoint.txt
[2026-01-09 18:44:36] -rw------- 1 boinc boinc       747 Jan  9 18:44 pilotlog.txt
[2026-01-09 18:44:36] -rw------- 1 boinc boinc    834047 Jan  9 18:44 log.47898826._034084.job.log.1
[2026-01-09 18:44:36] -rw------- 1 boinc boinc       357 Jan  9 18:44 output.list
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc       620 Jan  9 18:44 runtime_log
[2026-01-09 18:44:36] -rw------- 1 boinc boinc   1126400 Jan  9 18:44 result.tar.gz
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc      8917 Jan  9 18:44 runtime_log.err
[2026-01-09 18:44:36] -rw------- 1 boinc boinc       663 Jan  9 18:44 gdxNDmx0Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmhgKDm1XvV7m.diag
[2026-01-09 18:44:36] -rw-r--r-- 1 boinc boinc     12627 Jan  9 18:44 stderr.txt
[2026-01-09 18:44:36] HITS file was successfully produced:
[2026-01-09 18:44:36] -rw------- 1 boinc boinc 217779903 Jan  9 18:43 shared/HITS.pool.root.1
[2026-01-09 18:44:36]  *** Contents of shared directory: ***
[2026-01-09 18:44:36] total 434748
[2026-01-09 18:44:36] -rw-r--r-- 2 boinc boinc 225655563 Jan  9 17:08 ATLAS.root_0
[2026-01-09 18:44:36] -rw-r--r-- 2 boinc boinc    592402 Jan  9 17:08 input.tar.gz
[2026-01-09 18:44:36] -rw-r--r-- 2 boinc boinc     15847 Jan  9 17:08 start_atlas.sh
[2026-01-09 18:44:36] -rw------- 1 boinc boinc 217779903 Jan  9 18:43 HITS.pool.root.1
[2026-01-09 18:44:36] -rw------- 1 boinc boinc   1126400 Jan  9 18:44 result.tar.gz
18:44:38 (4187739): run_atlas exited; CPU time 21927.077609
18:44:38 (4187739): called boinc_finish(0)

</stderr_txt>
]]>

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