Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:19:01 (1847242): wrapper (7.7.26015): starting
13:19:01 (1847242): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 13:19:01] Arguments: --nthreads 4
[2026-01-09 13:19:01] Threads: 4
[2026-01-09 13:19:01] Checking for CVMFS
[2026-01-09 13:19:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:19:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:19:02] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:19:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:19:02] 2.9.2.0 1163962 2326 94352 154942 2 81 20327123 36864000 0 130560 0 1812870 99.990 86845 5158 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 13:19:02] CVMFS is ok
[2026-01-09 13:19:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:19:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:19:02] Further information can be found at the LHC@home message board.
[2026-01-09 13:19:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:19:02] Checking for apptainer binary...
[2026-01-09 13:19:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:19:02] Running /usr/bin/apptainer --version
[2026-01-09 13:19:02] apptainer version 1.4.1-1.1
[2026-01-09 13:19:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:19:02] magicA244a
[2026-01-09 13:19:02] apptainer works
[2026-01-09 13:19:02] Set ATHENA_PROC_NUMBER=4
[2026-01-09 13:19:02] Set ATHENA_CORE_NUMBER=4
[2026-01-09 13:19:02] Starting ATLAS job with PandaID=6963162616
[2026-01-09 13:19:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:48:26]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | job 6963162616 has completed (purged errors)
[2026-01-09 14:48:26] 2026-01-09 13:47:53,975 | INFO     | overall cleanup function is called
[2026-01-09 14:48:26] 2026-01-09 13:47:54,981 | INFO     | --- collectZombieJob: --- 10, [1857613]
[2026-01-09 14:48:26] 2026-01-09 13:47:54,981 | INFO     | zombie collector waiting for pid 1857613
[2026-01-09 14:48:26] 2026-01-09 13:47:54,981 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:48:26] 2026-01-09 13:47:54,981 | INFO     | collected zombie processes
[2026-01-09 14:48:26] 2026-01-09 13:47:54,982 | INFO     | will attempt to kill all subprocesses of pid=1857613
[2026-01-09 14:48:26] 2026-01-09 13:47:55,025 | INFO     | process IDs to be killed: [1857613] (in reverse order)
[2026-01-09 14:48:26] 2026-01-09 13:47:55,052 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:48:26] 2026-01-09 13:47:55,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:48:26] 2026-01-09 13:47:55,053 | INFO     | did not find any defunct processes belonging to 1857613
[2026-01-09 14:48:26] 2026-01-09 13:47:55,054 | INFO     | did not find any defunct processes belonging to 1857613
[2026-01-09 14:48:26] 2026-01-09 13:47:55,054 | INFO     | ready for new job
[2026-01-09 14:48:26] 2026-01-09 13:47:55,055 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:48:26] 2026-01-09 13:47:55,055 | INFO     | ***************************************
[2026-01-09 14:48:26] 2026-01-09 13:47:55,055 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:48:26] 2026-01-09 13:47:55,055 | INFO     | ***************************************
[2026-01-09 14:48:26] 2026-01-09 13:47:55,055 | INFO     | 
[2026-01-09 14:48:26] 2026-01-09 13:47:55,056 | INFO     | architecture information:
[2026-01-09 14:48:26] 2026-01-09 13:47:55,056 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:48:26] 2026-01-09 13:47:55,066 | INFO     | cat /etc/os-release:
[2026-01-09 14:48:26] NAME="CentOS Linux"
[2026-01-09 14:48:26] VERSION="7 (Core)"
[2026-01-09 14:48:26] ID="centos"
[2026-01-09 14:48:26] ID_LIKE="rhel fedora"
[2026-01-09 14:48:26] VERSION_ID="7"
[2026-01-09 14:48:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:48:26] ANSI_COLOR="0;31"
[2026-01-09 14:48:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:48:26] HOME_URL="https://www.centos.org/"
[2026-01-09 14:48:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:48:26] 
[2026-01-09 14:48:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:48:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:48:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:48:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:48:26] 
[2026-01-09 14:48:26] 2026-01-09 13:47:55,066 | INFO     | ***************************************
[2026-01-09 14:48:26] 2026-01-09 13:47:55,569 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 14:48:26] 2026-01-09 13:47:55,582 | INFO     | sufficient remaining disk space (340292272128 B)
[2026-01-09 14:48:26] 2026-01-09 13:47:55,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:48:26] 2026-01-09 13:47:55,583 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:48:26] 2026-01-09 13:47:55,583 | INFO     | update_server=False
[2026-01-09 14:48:26] 2026-01-09 13:47:55,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:48:26] 2026-01-09 13:47:55,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:48:26] 2026-01-09 13:47:55,583 | INFO     | aborting loop
[2026-01-09 14:48:26] 2026-01-09 13:47:55,583 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:48:26] 2026-01-09 13:47:55,822 | INFO     | all data control threads have been joined
[2026-01-09 14:48:26] 2026-01-09 13:47:55,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:48:26] 2026-01-09 13:47:56,584 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:56,585 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:56,589 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:56,828 | INFO     | [data] control thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:56,931 | INFO     | all job control threads have been joined
[2026-01-09 14:48:26] 2026-01-09 13:47:57,030 | INFO     | all payload control threads have been joined
[2026-01-09 14:48:26] 2026-01-09 13:47:57,135 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:57,529 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:57,693 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:57,725 | INFO     | [job] validate thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:57,793 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:57,841 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:57,937 | INFO     | [job] control thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:58,000 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:58,001 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:58,036 | INFO     | [payload] control thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:47:58,923 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:48:26] 2026-01-09 13:48:02,930 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:48:06,551 | INFO     | job.realtimelogging is not enabled
[2026-01-09 14:48:26] 2026-01-09 13:48:07,557 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:48:26] 2026-01-09 13:48:14,255 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:48:26] 2026-01-09 13:48:14,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648154208064)>', '<ExcThread(monitor, started 140647780554496)>']
[2026-01-09 14:48:26] 2026-01-09 13:48:19,464 | INFO     | all workflow threads have been joined
[2026-01-09 14:48:26] 2026-01-09 13:48:19,464 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:48:26] 2026-01-09 13:48:19,465 | INFO     | traces error code: 0
[2026-01-09 14:48:26] 2026-01-09 13:48:19,465 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:48:26] 2026-01-09 13:48:25,888 | INFO     | PID=1851045 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:48:26] 2026-01-09 13:48:25,888 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:48:26] 2026-01-09 13:48:25,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:48:26] 2026-01-09 13:48:25,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:48:26] 2026-01-09 13:48:25,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:48:26] 2026-01-09 13:48:25,888 | INFO     | [monitor] control thread has ended
[2026-01-09 14:48:26] 2026-01-09 13:48:25,939 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:48:26] 2026-01-09 13:48:25,942 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:48:26] 2026-01-09 13:48:25,945 [wrapper] pilotpid: 1851045
[2026-01-09 14:48:26] 2026-01-09 13:48:25,947 [wrapper] Pilot exit status: 0
[2026-01-09 14:48:26] 2026-01-09 13:48:25,955 [wrapper] pandaids: 6963162616
[2026-01-09 14:48:26] 2026-01-09 13:48:25,973 [wrapper] cleanup supervisor_pilot 1869897 1851046
[2026-01-09 14:48:26] 2026-01-09 13:48:25,975 [wrapper] Test setup, not cleaning
[2026-01-09 14:48:26] 2026-01-09 13:48:25,978 [wrapper] apfmon messages muted
[2026-01-09 14:48:26] 2026-01-09 13:48:25,980 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:48:26] 2026-01-09 13:48:25,983 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:48:26]  *** Error codes and diagnostics ***
[2026-01-09 14:48:26]     "exeErrorCode": 0,
[2026-01-09 14:48:26]     "exeErrorDiag": "",
[2026-01-09 14:48:26]     "pilotErrorCode": 0,
[2026-01-09 14:48:26]     "pilotErrorDiag": "",
[2026-01-09 14:48:26]  *** Listing of results directory ***
[2026-01-09 14:48:26] total 442192
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 14:48:26] -rwx------ 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc       100 Jan  9 13:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:48:26] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 13:19 run_atlas
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc       105 Jan  9 13:19 job.xml
[2026-01-09 14:48:26] -rw-r--r-- 2 boinc boinc 226080778 Jan  9 13:19 EVNT.47898824._001302.pool.root.1
[2026-01-09 14:48:26] -rw-r--r-- 2 boinc boinc    592406 Jan  9 13:19 input.tar.gz
[2026-01-09 14:48:26] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:19 start_atlas.sh
[2026-01-09 14:48:26] drwxrwx--x 2 boinc boinc      4096 Jan  9 13:19 shared
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:19 boinc_setup_complete
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc      6438 Jan  9 13:19 init_data.xml
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:19 boinc_lockfile
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc      2520 Jan  9 13:19 pandaJob.out
[2026-01-09 14:48:26] -rw------- 1 boinc boinc    989377 Jan  9 13:19 agis_schedconf.cvmfs.json
[2026-01-09 14:48:26] -rw------- 1 boinc boinc   1516240 Jan  9 13:19 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:48:26] drwx------ 5 boinc boinc      4096 Jan  9 13:19 pilot3
[2026-01-09 14:48:26] -rw------- 1 boinc boinc 220695757 Jan  9 14:47 HITS.47898826._034172.pool.root.1
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc       529 Jan  9 14:47 boinc_task_state.xml
[2026-01-09 14:48:26] -rw------- 1 boinc boinc        95 Jan  9 14:47 pilot_heartbeat.json
[2026-01-09 14:48:26] -rw------- 1 boinc boinc      1015 Jan  9 14:47 memory_monitor_summary.json
[2026-01-09 14:48:26] -rw------- 1 boinc boinc    288125 Jan  9 14:47 log.47898826._034172.job.log.tgz.1
[2026-01-09 14:48:26] -rw------- 1 boinc boinc      7755 Jan  9 14:47 heartbeat.json
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc      8192 Jan  9 14:47 boinc_mmap_file
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc        27 Jan  9 14:47 wrapper_checkpoint.txt
[2026-01-09 14:48:26] -rw------- 1 boinc boinc       747 Jan  9 14:48 pilotlog.txt
[2026-01-09 14:48:26] -rw------- 1 boinc boinc    777300 Jan  9 14:48 log.47898826._034172.job.log.1
[2026-01-09 14:48:26] -rw------- 1 boinc boinc       357 Jan  9 14:48 output.list
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc       620 Jan  9 14:48 runtime_log
[2026-01-09 14:48:26] -rw------- 1 boinc boinc   1085440 Jan  9 14:48 result.tar.gz
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc      8917 Jan  9 14:48 runtime_log.err
[2026-01-09 14:48:26] -rw------- 1 boinc boinc       662 Jan  9 14:48 HirNDmx0Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6vlKDmqgULun.diag
[2026-01-09 14:48:26] -rw-r--r-- 1 boinc boinc     11822 Jan  9 14:48 stderr.txt
[2026-01-09 14:48:26] HITS file was successfully produced:
[2026-01-09 14:48:26] -rw------- 1 boinc boinc 220695757 Jan  9 14:47 shared/HITS.pool.root.1
[2026-01-09 14:48:26]  *** Contents of shared directory: ***
[2026-01-09 14:48:26] total 437972
[2026-01-09 14:48:26] -rw-r--r-- 2 boinc boinc 226080778 Jan  9 13:19 ATLAS.root_0
[2026-01-09 14:48:26] -rw-r--r-- 2 boinc boinc    592406 Jan  9 13:19 input.tar.gz
[2026-01-09 14:48:26] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:19 start_atlas.sh
[2026-01-09 14:48:26] -rw------- 1 boinc boinc 220695757 Jan  9 14:47 HITS.pool.root.1
[2026-01-09 14:48:26] -rw------- 1 boinc boinc   1085440 Jan  9 14:48 result.tar.gz
14:48:27 (1847242): run_atlas exited; CPU time 20370.864475
14:48:27 (1847242): called boinc_finish(0)

</stderr_txt>
]]>

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