Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:29:11 (7608): wrapper (7.7.26015): starting
10:29:11 (7608): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:29:11] Arguments: --nthreads 8
[2026-01-09 10:29:11] Threads: 8
[2026-01-09 10:29:11] Checking for CVMFS
[2026-01-09 10:29:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:29:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:29:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:29:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:29:12] 2.11.2.0 22482 35219 96384 154938 0 56 20561198 25165824 0 130560 0 15504918 99.832 9757640 3881 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 10:29:12] CVMFS is ok
[2026-01-09 10:29:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:29:12] Checking for apptainer binary...
[2026-01-09 10:29:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:29:12] Running /usr/bin/apptainer --version
[2026-01-09 10:29:12] apptainer version 1.3.2-1.el7
[2026-01-09 10:29:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:29:14] cg-vwn445.simple-grid.lan
[2026-01-09 10:29:14] apptainer works
[2026-01-09 10:29:14] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:29:14] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:29:14] Starting ATLAS job with PandaID=6963186674
[2026-01-09 10:29:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:23:52]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:23:52] 2026-01-09 12:22:49,268 | INFO     | time since job start (10400s) is within the limit (349056.0s)
[2026-01-09 13:23:52] 2026-01-09 12:22:51,273 | INFO     | time since job start (10402s) is within the limit (349056.0s)
[2026-01-09 13:23:52] 2026-01-09 12:22:51,702 | INFO     | monitor loop #700: job 0:6963186674 is in state 'finished'
[2026-01-09 13:23:52] 2026-01-09 12:22:51,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:23:52] 2026-01-09 12:22:53,278 | INFO     | time since job start (10404s) is within the limit (349056.0s)
[2026-01-09 13:23:52] 2026-01-09 12:22:54,205 | INFO     | monitor loop #701: job 0:6963186674 is in state 'finished'
[2026-01-09 13:23:52] 2026-01-09 12:22:54,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,284 | INFO     | time since job start (10406s) is within the limit (349056.0s)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,550 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 13:23:52] 2026-01-09 12:22:55,551 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 13:23:52] 2026-01-09 12:22:55,553 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6963186674/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,554 | INFO     | extracted standard info from prmon json
[2026-01-09 13:23:52] 2026-01-09 12:22:55,554 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:23:52] 2026-01-09 12:22:55,555 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:23:52] 2026-01-09 12:22:55,555 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:23:52] 2026-01-09 12:22:55,555 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:23:52] 2026-01-09 12:22:55,559 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:23:52] 2026-01-09 12:22:55,560 | INFO     | sum of square deviations: 1523386702.5
[2026-01-09 13:23:52] 2026-01-09 12:22:55,561 | INFO     | sum of deviations: -2313892992.0000005
[2026-01-09 13:23:52] 2026-01-09 12:22:55,561 | INFO     | mean x: 1767956154.5
[2026-01-09 13:23:52] 2026-01-09 12:22:55,561 | INFO     | mean y: 2530358.1647058823
[2026-01-09 13:23:52] 2026-01-09 12:22:55,561 | INFO     | intersect: 2687903250.9091334
[2026-01-09 13:23:52] 2026-01-09 12:22:55,562 | INFO     | chi2: 1.7048587640402724
[2026-01-09 13:23:52] 2026-01-09 12:22:55,562 | INFO     | sum of square deviations: 1392881930.0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,563 | INFO     | sum of deviations: -1952286821.9999986
[2026-01-09 13:23:52] 2026-01-09 12:22:55,564 | INFO     | mean x: 1767956002.0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,564 | INFO     | mean y: 2530780.8363636364
[2026-01-09 13:23:52] 2026-01-09 12:22:55,564 | INFO     | intersect: 2480527752.611569
[2026-01-09 13:23:52] 2026-01-09 12:22:55,564 | INFO     | chi2: 1.7053031577234836
[2026-01-09 13:23:52] 2026-01-09 12:22:55,564 | INFO     | current chi2=1.7053031577234836 (change=-0.026066304880182745 %)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,564 | INFO     | right removable region: 164
[2026-01-09 13:23:52] 2026-01-09 12:22:55,565 | INFO     | sum of square deviations: 1392881930.0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,566 | INFO     | sum of deviations: -28500599827.999996
[2026-01-09 13:23:52] 2026-01-09 12:22:55,566 | INFO     | mean x: 1767956307.0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,566 | INFO     | mean y: 2560546.2666666666
[2026-01-09 13:23:52] 2026-01-09 12:22:55,566 | INFO     | intersect: 36177784112.55682
[2026-01-09 13:23:52] 2026-01-09 12:22:55,567 | INFO     | chi2: 0.1994295649149748
[2026-01-09 13:23:52] 2026-01-09 12:22:55,567 | INFO     | current chi2=0.1994295649149748 (change=88.30228232851645 %)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,567 | INFO     | sum of square deviations: 1270051720.0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,568 | INFO     | sum of deviations: -32045137991.0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,569 | INFO     | mean x: 1767956459.5
[2026-01-09 13:23:52] 2026-01-09 12:22:55,569 | INFO     | mean y: 2564947.3875
[2026-01-09 13:23:52] 2026-01-09 12:22:55,569 | INFO     | intersect: 44610518950.04599
[2026-01-09 13:23:52] 2026-01-09 12:22:55,569 | INFO     | chi2: 0.15244619092638542
[2026-01-09 13:23:52] 2026-01-09 12:22:55,569 | INFO     | current chi2=0.15244619092638542 (change=23.55888105588575 %)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,569 | INFO     | left removable region: 20
[2026-01-09 13:23:52] 2026-01-09 12:22:55,570 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,571 | INFO     | sum of deviations: -22817286527.5
[2026-01-09 13:23:52] 2026-01-09 12:22:55,571 | INFO     | mean x: 1767956581.5
[2026-01-09 13:23:52] 2026-01-09 12:22:55,571 | INFO     | mean y: 2555244.590277778
[2026-01-09 13:23:52] 2026-01-09 12:22:55,571 | INFO     | intersect: 43572863793.51298
[2026-01-09 13:23:52] 2026-01-09 12:22:55,571 | INFO     | chi2: 0.1423054240332477
[2026-01-09 13:23:52] 2026-01-09 12:22:55,572 | INFO     | current memory leak: -24.64 B/s (using 144 data points, chi2=0.14)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,572 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | ..............................
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . Timing measurements:
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . get job = 0 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . initial setup = 2 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . payload setup = 6 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . stage-in = 0 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . payload execution = 10369 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . stage-out = 1 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,573 | INFO     | . log creation = 0 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,574 | INFO     | ..............................
[2026-01-09 13:23:52] 2026-01-09 12:22:55,690 | INFO     | 
[2026-01-09 13:23:52] 2026-01-09 12:22:55,690 | INFO     | job summary report
[2026-01-09 13:23:52] 2026-01-09 12:22:55,690 | INFO     | --------------------------------------------------
[2026-01-09 13:23:52] 2026-01-09 12:22:55,690 | INFO     | PanDA job id: 6963186674
[2026-01-09 13:23:52] 2026-01-09 12:22:55,690 | INFO     | task id: 47898826
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | errors: (none)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | pilot state: finished 
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | transexitcode: 0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | exeerrorcode: 0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | exeerrordiag: 
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | exitcode: 0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | exitmsg: OK
[2026-01-09 13:23:52] 2026-01-09 12:22:55,691 | INFO     | cpuconsumptiontime: 76422 s
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | nevents: 400
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | neventsw: 0
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | pid: 17759
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | pgrp: 17759
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | corecount: 8
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | event service: False
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | sizes: {0: 2283742, 1: 2283997, 2: 2283997, 6: 2284287, 12: 2284315, 10380: 2312771, 10381: 2312898, 10382: 2322010, 10389: 2322212}
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | --------------------------------------------------
[2026-01-09 13:23:52] 2026-01-09 12:22:55,692 | INFO     | 
[2026-01-09 13:23:52] 2026-01-09 12:22:55,693 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-09 13:23:52] 2026-01-09 12:22:55,727 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,727 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,727 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,727 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:23:52] 2026-01-09 12:22:55,729 | INFO     | job 6963186674 has completed (purged errors)
[2026-01-09 13:23:52] 2026-01-09 12:22:55,730 | INFO     | overall cleanup function is called
[2026-01-09 13:23:52] 2026-01-09 12:22:56,372 | INFO     | PID=11326 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:23:52] 2026-01-09 12:22:56,737 | INFO     | --- collectZombieJob: --- 10, [17759]
[2026-01-09 13:23:52] 2026-01-09 12:22:56,738 | INFO     | zombie collector waiting for pid 17759
[2026-01-09 13:23:52] 2026-01-09 12:22:56,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:23:52] 2026-01-09 12:22:56,738 | INFO     | collected zombie processes
[2026-01-09 13:23:52] 2026-01-09 12:22:56,738 | INFO     | will attempt to kill all subprocesses of pid=17759
[2026-01-09 13:23:52] 2026-01-09 12:22:56,801 | INFO     | process IDs to be killed: [17759] (in reverse order)
[2026-01-09 13:23:52] 2026-01-09 12:22:56,847 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:23:52] 2026-01-09 12:22:56,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:23:52] 2026-01-09 12:22:56,849 | INFO     | did not find any defunct processes belonging to 17759
[2026-01-09 13:23:52] 2026-01-09 12:22:56,851 | INFO     | did not find any defunct processes belonging to 17759
[2026-01-09 13:23:52] 2026-01-09 12:22:56,851 | INFO     | ready for new job
[2026-01-09 13:23:52] 2026-01-09 12:22:56,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:23:52] 2026-01-09 12:22:56,853 | INFO     | ***************************************
[2026-01-09 13:23:52] 2026-01-09 12:22:56,853 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:23:52] 2026-01-09 12:22:56,853 | INFO     | ***************************************
[2026-01-09 13:23:52] 2026-01-09 12:22:56,854 | INFO     | 
[2026-01-09 13:23:52] 2026-01-09 12:22:56,854 | INFO     | pilot is running in a VM
[2026-01-09 13:23:52] 2026-01-09 12:22:56,854 | INFO     | architecture information:
[2026-01-09 13:23:52] 2026-01-09 12:22:56,855 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:23:52] 2026-01-09 12:22:56,872 | INFO     | cat /etc/os-release:
[2026-01-09 13:23:52] NAME="CentOS Linux"
[2026-01-09 13:23:52] VERSION="7 (Core)"
[2026-01-09 13:23:52] ID="centos"
[2026-01-09 13:23:52] ID_LIKE="rhel fedora"
[2026-01-09 13:23:52] VERSION_ID="7"
[2026-01-09 13:23:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:23:52] ANSI_COLOR="0;31"
[2026-01-09 13:23:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:23:52] HOME_URL="https://www.centos.org/"
[2026-01-09 13:23:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:23:52] 
[2026-01-09 13:23:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:23:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:23:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:23:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:23:52] 
[2026-01-09 13:23:52] 2026-01-09 12:22:56,872 | INFO     | ***************************************
[2026-01-09 13:23:52] 2026-01-09 12:22:57,375 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-09 13:23:52] 2026-01-09 12:22:57,400 | INFO     | sufficient remaining disk space (498119737344 B)
[2026-01-09 13:23:52] 2026-01-09 12:22:57,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:23:52] 2026-01-09 12:22:57,401 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:23:52] 2026-01-09 12:22:57,401 | INFO     | update_server=False
[2026-01-09 13:23:52] 2026-01-09 12:22:57,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:23:52] 2026-01-09 12:22:57,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:23:52] 2026-01-09 12:22:57,714 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:23:52] 2026-01-09 12:22:57,715 | INFO     | aborting loop
[2026-01-09 13:23:52] 2026-01-09 12:22:57,787 | INFO     | all data control threads have been joined
[2026-01-09 13:23:52] 2026-01-09 12:22:57,926 | INFO     | all payload control threads have been joined
[2026-01-09 13:23:52] 2026-01-09 12:22:58,407 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,407 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,463 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,484 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,586 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:23:52] 2026-01-09 12:22:58,628 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,686 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:23:52] 2026-01-09 12:22:58,720 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,793 | INFO     | [data] control thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,832 | INFO     | all job control threads have been joined
[2026-01-09 13:23:52] 2026-01-09 12:22:58,873 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:58,932 | INFO     | [payload] control thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:59,167 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:59,414 | INFO     | [job] validate thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:59,605 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:59,634 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:22:59,838 | INFO     | [job] control thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:23:00,590 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:23:02,692 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:23:52] 2026-01-09 12:23:28,470 | INFO     | PID=11326 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:23:52] 2026-01-09 12:23:28,470 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:23:52] 2026-01-09 12:23:28,471 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:23:52] 2026-01-09 12:23:28,471 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:23:52] 2026-01-09 12:23:46,025 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:23:52] 2026-01-09 12:23:47,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401777420096)>', '<ExcThread(monitor, started 140401197442816)>']
[2026-01-09 13:23:52] 2026-01-09 12:23:47,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:23:52] 2026-01-09 12:23:47,569 | INFO     | [monitor] control thread has ended
[2026-01-09 13:23:52] 2026-01-09 12:23:52,380 | INFO     | all workflow threads have been joined
[2026-01-09 13:23:52] 2026-01-09 12:23:52,380 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:23:52] 2026-01-09 12:23:52,381 | INFO     | traces error code: 0
[2026-01-09 13:23:52] 2026-01-09 12:23:52,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:23:52] 2026-01-09 12:23:52,523 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:23:52] 2026-01-09 12:23:52,527 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:23:52] 2026-01-09 12:23:52,531 [wrapper] pilotpid: 11326
[2026-01-09 13:23:52] 2026-01-09 12:23:52,535 [wrapper] Pilot exit status: 0
[2026-01-09 13:23:52] 2026-01-09 12:23:52,551 [wrapper] pandaids: 6963186674
[2026-01-09 13:23:52] 2026-01-09 12:23:52,589 [wrapper] cleanup supervisor_pilot  2928 11327
[2026-01-09 13:23:52] 2026-01-09 12:23:52,596 [wrapper] Test setup, not cleaning
[2026-01-09 13:23:52] 2026-01-09 12:23:52,601 [wrapper] apfmon messages muted
[2026-01-09 13:23:52] 2026-01-09 12:23:52,606 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:23:52] 2026-01-09 12:23:52,610 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:23:52]  *** Error codes and diagnostics ***
[2026-01-09 13:23:52]     "exeErrorCode": 0,
[2026-01-09 13:23:52]     "exeErrorDiag": "",
[2026-01-09 13:23:52]     "pilotErrorCode": 0,
[2026-01-09 13:23:52]     "pilotErrorDiag": "",
[2026-01-09 13:23:52]  *** Listing of results directory ***
[2026-01-09 13:23:52] total 444240
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 13:23:52] -rwx------. 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc       100 Jan  9 10:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:23:52] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 10:29 run_atlas
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc       105 Jan  9 10:29 job.xml
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc      6391 Jan  9 10:29 init_data.xml
[2026-01-09 13:23:52] -rw-r--r--. 2 boinc boinc 226201084 Jan  9 10:29 EVNT.47898824._001405.pool.root.1
[2026-01-09 13:23:52] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:29 start_atlas.sh
[2026-01-09 13:23:52] drwxrwx--x. 2 boinc boinc        68 Jan  9 10:29 shared
[2026-01-09 13:23:52] -rw-r--r--. 2 boinc boinc    592398 Jan  9 10:29 input.tar.gz
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc         0 Jan  9 10:29 boinc_lockfile
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc      2518 Jan  9 10:29 pandaJob.out
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc    989751 Jan  9 10:29 agis_schedconf.cvmfs.json
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc   1516240 Jan  9 10:29 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:23:52] drwx------. 5 boinc boinc      4096 Jan  9 10:29 pilot3
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc 221256308 Jan  9 13:22 HITS.47898826._036650.pool.root.1
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc       530 Jan  9 13:22 boinc_task_state.xml
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc        95 Jan  9 13:22 pilot_heartbeat.json
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc      1014 Jan  9 13:22 memory_monitor_summary.json
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc    387441 Jan  9 13:22 log.47898826._036650.job.log.tgz.1
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc      7778 Jan  9 13:22 heartbeat.json
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc      8192 Jan  9 13:23 boinc_mmap_file
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc        28 Jan  9 13:23 wrapper_checkpoint.txt
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc      4810 Jan  9 13:23 pilotlog.txt
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc   1388404 Jan  9 13:23 log.47898826._036650.job.log.1
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc       357 Jan  9 13:23 output.list
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc       620 Jan  9 13:23 runtime_log
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc   1792000 Jan  9 13:23 result.tar.gz
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc      8833 Jan  9 13:23 runtime_log.err
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc       655 Jan  9 13:23 FLPLDmO0Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdfgKDmIE2HZn.diag
[2026-01-09 13:23:52] -rw-r--r--. 1 boinc boinc     21091 Jan  9 13:23 stderr.txt
[2026-01-09 13:23:52] HITS file was successfully produced:
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc 221256308 Jan  9 13:22 shared/HITS.pool.root.1
[2026-01-09 13:23:52]  *** Contents of shared directory: ***
[2026-01-09 13:23:52] total 439320
[2026-01-09 13:23:52] -rw-r--r--. 2 boinc boinc 226201084 Jan  9 10:29 ATLAS.root_0
[2026-01-09 13:23:52] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:29 start_atlas.sh
[2026-01-09 13:23:52] -rw-r--r--. 2 boinc boinc    592398 Jan  9 10:29 input.tar.gz
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc 221256308 Jan  9 13:22 HITS.pool.root.1
[2026-01-09 13:23:52] -rw-------. 1 boinc boinc   1792000 Jan  9 13:23 result.tar.gz
13:23:54 (7608): run_atlas exited; CPU time 76494.193251
13:23:54 (7608): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN