Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:56:23 (20421): wrapper (7.7.26015): starting
10:56:23 (20421): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:56:23] Arguments: --nthreads 8
[2026-01-09 10:56:23] Threads: 8
[2026-01-09 10:56:23] Checking for CVMFS
[2026-01-09 10:56:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:56:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:56:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:56:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:56:23] 2.11.2.0 5643 35246 100908 154938 0 57 19564479 25165824 0 130560 0 8214792 99.736 8509927 3070 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 10:56:23] CVMFS is ok
[2026-01-09 10:56:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:56:23] Checking for apptainer binary...
[2026-01-09 10:56:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:56:23] Running /usr/bin/apptainer --version
[2026-01-09 10:56:23] apptainer version 1.3.2-1.el7
[2026-01-09 10:56:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:56:24] cg-vwn380.simple-grid.lan
[2026-01-09 10:56:24] apptainer works
[2026-01-09 10:56:24] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:56:24] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:56:24] Starting ATLAS job with PandaID=6963186837
[2026-01-09 10:56:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:37:25]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:37:25] 2026-01-09 12:36:52,787 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 13:37:25] 2026-01-09 12:36:52,792 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 13:37:25] 2026-01-09 12:36:52,795 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6963186837/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,796 | INFO     | extracted standard info from prmon json
[2026-01-09 13:37:25] 2026-01-09 12:36:52,796 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:37:25] 2026-01-09 12:36:52,796 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:37:25] 2026-01-09 12:36:52,797 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:37:25] 2026-01-09 12:36:52,797 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:37:25] 2026-01-09 12:36:52,801 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:37:25] 2026-01-09 12:36:52,801 | INFO     | sum of square deviations: 1199940638.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,802 | INFO     | sum of deviations: 17076494330.000013
[2026-01-09 13:37:25] 2026-01-09 12:36:52,803 | INFO     | mean x: 1767957388.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,803 | INFO     | mean y: 2484501.2484076433
[2026-01-09 13:37:25] 2026-01-09 12:36:52,803 | INFO     | intersect: -25157522048.89531
[2026-01-09 13:37:25] 2026-01-09 12:36:52,803 | INFO     | chi2: 1.5326973776008888
[2026-01-09 13:37:25] 2026-01-09 12:36:52,804 | INFO     | sum of square deviations: 1088905998.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,805 | INFO     | sum of deviations: 16377507103.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,805 | INFO     | mean x: 1767957235.5
[2026-01-09 13:37:25] 2026-01-09 12:36:52,805 | INFO     | mean y: 2483540.9078947366
[2026-01-09 13:37:25] 2026-01-09 12:36:52,805 | INFO     | intersect: -26588179230.15115
[2026-01-09 13:37:25] 2026-01-09 12:36:52,806 | INFO     | chi2: 1.5344030847208934
[2026-01-09 13:37:25] 2026-01-09 12:36:52,806 | INFO     | current chi2=1.5344030847208934 (change=-0.11128792577922585 %)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,806 | INFO     | right removable region: 151
[2026-01-09 13:37:25] 2026-01-09 12:36:52,807 | INFO     | sum of square deviations: 1088905998.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,808 | INFO     | sum of deviations: -6001112869.499998
[2026-01-09 13:37:25] 2026-01-09 12:36:52,808 | INFO     | mean x: 1767957540.5
[2026-01-09 13:37:25] 2026-01-09 12:36:52,808 | INFO     | mean y: 2515713.1513157897
[2026-01-09 13:37:25] 2026-01-09 12:36:52,808 | INFO     | intersect: 9745976368.62666
[2026-01-09 13:37:25] 2026-01-09 12:36:52,809 | INFO     | chi2: 0.09462890151214383
[2026-01-09 13:37:25] 2026-01-09 12:36:52,809 | INFO     | current chi2=0.09462890151214383 (change=93.82598920732381 %)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,809 | INFO     | sufficient remaining disk space (498121834496 B)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,810 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,811 | INFO     | sum of deviations: -5731159657.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,811 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,812 | INFO     | mean x: 1767957693.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,812 | INFO     | mean y: 2515241.707482993
[2026-01-09 13:37:25] 2026-01-09 12:36:52,812 | INFO     | intersect: 10289877785.519606
[2026-01-09 13:37:25] 2026-01-09 12:36:52,813 | INFO     | chi2: 0.08005555226381716
[2026-01-09 13:37:25] 2026-01-09 12:36:52,813 | INFO     | current chi2=0.08005555226381716 (change=15.40052670531788 %)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,813 | INFO     | left removable region: 20
[2026-01-09 13:37:25] 2026-01-09 12:36:52,813 | INFO     | sum of square deviations: 697054930.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,814 | INFO     | sum of deviations: 3181273647.0000024
[2026-01-09 13:37:25] 2026-01-09 12:36:52,814 | INFO     | mean x: 1767957815.0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,814 | INFO     | mean y: 2499673.9465648853
[2026-01-09 13:37:25] 2026-01-09 12:36:52,815 | INFO     | intersect: -8066244070.348029
[2026-01-09 13:37:25] 2026-01-09 12:36:52,815 | INFO     | chi2: 0.00032153685860517993
[2026-01-09 13:37:25] 2026-01-09 12:36:52,815 | INFO     | current memory leak: 4.56 B/s (using 131 data points, chi2=0.00)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,816 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,816 | INFO     | ..............................
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . Timing measurements:
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . get job = 0 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . initial setup = 1 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . payload setup = 6 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . stage-in = 0 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . payload execution = 9575 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . stage-out = 1 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,817 | INFO     | . log creation = 0 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,818 | INFO     | ..............................
[2026-01-09 13:37:25] 2026-01-09 12:36:52,887 | INFO     | size of work directory /var/lib/boinc/slots/6/PanDA_Pilot-6963186837: 3988511 B (within 4404019200 B limit)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,898 | INFO     | pfn file=/var/lib/boinc/slots/6/PanDA_Pilot-6963186837/HITS.47898826._036745.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,898 | INFO     | total size of present files: 0 B (workdir size: 3988511 B)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,898 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/6/PanDA_Pilot-6963186837/HITS.47898826._036745.pool.root.1 since it does not exist
[2026-01-09 13:37:25] 2026-01-09 12:36:52,935 | INFO     | 
[2026-01-09 13:37:25] 2026-01-09 12:36:52,936 | INFO     | job summary report
[2026-01-09 13:37:25] 2026-01-09 12:36:52,936 | INFO     | --------------------------------------------------
[2026-01-09 13:37:25] 2026-01-09 12:36:52,936 | INFO     | PanDA job id: 6963186837
[2026-01-09 13:37:25] 2026-01-09 12:36:52,936 | INFO     | task id: 47898826
[2026-01-09 13:37:25] 2026-01-09 12:36:52,936 | INFO     | errors: (none)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,936 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:37:25] 2026-01-09 12:36:52,937 | INFO     | pilot state: finished 
[2026-01-09 13:37:25] 2026-01-09 12:36:52,937 | INFO     | transexitcode: 0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,937 | INFO     | exeerrorcode: 0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,937 | INFO     | exeerrordiag: 
[2026-01-09 13:37:25] 2026-01-09 12:36:52,937 | INFO     | exitcode: 0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | exitmsg: OK
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | cpuconsumptiontime: 71694 s
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | nevents: 400
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | neventsw: 0
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | pid: 30571
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | pgrp: 30571
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | corecount: 8
[2026-01-09 13:37:25] 2026-01-09 12:36:52,938 | INFO     | event service: False
[2026-01-09 13:37:25] 2026-01-09 12:36:52,939 | INFO     | sizes: {0: 2283970, 5: 2284232, 11: 2284288, 9585: 2312468, 9586: 2312467, 9587: 2321521, 9590: 2321705, 9596: 2321927}
[2026-01-09 13:37:25] 2026-01-09 12:36:52,939 | INFO     | --------------------------------------------------
[2026-01-09 13:37:25] 2026-01-09 12:36:52,939 | INFO     | 
[2026-01-09 13:37:25] 2026-01-09 12:36:52,939 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-01-09 13:37:25] 2026-01-09 12:36:52,972 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,973 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,973 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,973 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,973 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,973 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,973 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,974 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,974 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,974 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,974 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,974 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,975 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,975 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,975 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,975 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,975 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,975 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,975 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,976 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:37:25] 2026-01-09 12:36:52,976 | INFO     | job 6963186837 has completed (purged errors)
[2026-01-09 13:37:25] 2026-01-09 12:36:52,976 | INFO     | overall cleanup function is called
[2026-01-09 13:37:25] 2026-01-09 12:36:53,013 | INFO     | number of running child processes to parent process 30571: 1
[2026-01-09 13:37:25] 2026-01-09 12:36:53,014 | INFO     | maximum number of monitored processes: 6
[2026-01-09 13:37:25] 2026-01-09 12:36:53,014 | INFO     | aborting job monitoring since job object (job id=6963186837) has expired
[2026-01-09 13:37:25] 2026-01-09 12:36:53,983 | INFO     | --- collectZombieJob: --- 10, [30571]
[2026-01-09 13:37:25] 2026-01-09 12:36:53,983 | INFO     | zombie collector waiting for pid 30571
[2026-01-09 13:37:25] 2026-01-09 12:36:53,984 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:37:25] 2026-01-09 12:36:53,984 | INFO     | collected zombie processes
[2026-01-09 13:37:25] 2026-01-09 12:36:53,984 | INFO     | will attempt to kill all subprocesses of pid=30571
[2026-01-09 13:37:25] 2026-01-09 12:36:54,049 | INFO     | process IDs to be killed: [30571] (in reverse order)
[2026-01-09 13:37:25] 2026-01-09 12:36:54,099 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:37:25] 2026-01-09 12:36:54,100 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:37:25] 2026-01-09 12:36:54,102 | INFO     | did not find any defunct processes belonging to 30571
[2026-01-09 13:37:25] 2026-01-09 12:36:54,103 | INFO     | did not find any defunct processes belonging to 30571
[2026-01-09 13:37:25] 2026-01-09 12:36:54,103 | INFO     | ready for new job
[2026-01-09 13:37:25] 2026-01-09 12:36:54,103 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:37:25] 2026-01-09 12:36:54,105 | INFO     | ***************************************
[2026-01-09 13:37:25] 2026-01-09 12:36:54,105 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:37:25] 2026-01-09 12:36:54,105 | INFO     | ***************************************
[2026-01-09 13:37:25] 2026-01-09 12:36:54,106 | INFO     | 
[2026-01-09 13:37:25] 2026-01-09 12:36:54,106 | INFO     | pilot is running in a VM
[2026-01-09 13:37:25] 2026-01-09 12:36:54,106 | INFO     | architecture information:
[2026-01-09 13:37:25] 2026-01-09 12:36:54,107 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:37:25] 2026-01-09 12:36:54,123 | INFO     | cat /etc/os-release:
[2026-01-09 13:37:25] NAME="CentOS Linux"
[2026-01-09 13:37:25] VERSION="7 (Core)"
[2026-01-09 13:37:25] ID="centos"
[2026-01-09 13:37:25] ID_LIKE="rhel fedora"
[2026-01-09 13:37:25] VERSION_ID="7"
[2026-01-09 13:37:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:37:25] ANSI_COLOR="0;31"
[2026-01-09 13:37:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:37:25] HOME_URL="https://www.centos.org/"
[2026-01-09 13:37:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:37:25] 
[2026-01-09 13:37:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:37:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:37:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:37:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:37:25] 
[2026-01-09 13:37:25] 2026-01-09 12:36:54,123 | INFO     | ***************************************
[2026-01-09 13:37:25] 2026-01-09 12:36:54,627 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-01-09 13:37:25] 2026-01-09 12:36:54,646 | INFO     | sufficient remaining disk space (498127077376 B)
[2026-01-09 13:37:25] 2026-01-09 12:36:54,646 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:37:25] 2026-01-09 12:36:54,646 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:37:25] 2026-01-09 12:36:54,646 | INFO     | update_server=False
[2026-01-09 13:37:25] 2026-01-09 12:36:54,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:37:25] 2026-01-09 12:36:54,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:37:25] 2026-01-09 12:36:54,647 | INFO     | aborting loop
[2026-01-09 13:37:25] 2026-01-09 12:36:54,647 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:37:25] 2026-01-09 12:36:54,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:37:25] 2026-01-09 12:36:55,323 | INFO     | all data control threads have been joined
[2026-01-09 13:37:25] 2026-01-09 12:36:55,652 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:55,653 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:55,653 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:55,657 | INFO     | all payload control threads have been joined
[2026-01-09 13:37:25] 2026-01-09 12:36:56,061 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,211 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:37:25] 2026-01-09 12:36:56,304 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,329 | INFO     | [data] control thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,330 | INFO     | all job control threads have been joined
[2026-01-09 13:37:25] 2026-01-09 12:36:56,401 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,662 | INFO     | [payload] control thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,670 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,781 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,881 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,948 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:56,949 | INFO     | [job] validate thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:57,127 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:57,335 | INFO     | [job] control thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:36:57,499 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:37:25] 2026-01-09 12:37:01,505 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:37:25] 2026-01-09 12:37:02,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671746074432)>', '<ExcThread(monitor, started 139670767781632)>']
[2026-01-09 13:37:25] 2026-01-09 12:37:07,729 | INFO     | all workflow threads have been joined
[2026-01-09 13:37:25] 2026-01-09 12:37:07,730 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:37:25] 2026-01-09 12:37:07,730 | INFO     | traces error code: 0
[2026-01-09 13:37:25] 2026-01-09 12:37:07,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:37:25] 2026-01-09 12:37:24,683 | INFO     | PID=24140 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 13:37:25] 2026-01-09 12:37:24,684 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:37:25] 2026-01-09 12:37:24,684 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:37:25] 2026-01-09 12:37:24,684 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:37:25] 2026-01-09 12:37:24,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:37:25] 2026-01-09 12:37:24,684 | INFO     | [monitor] control thread has ended
[2026-01-09 13:37:25] 2026-01-09 12:37:24,825 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:37:25] 2026-01-09 12:37:24,832 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:37:25] 2026-01-09 12:37:24,835 [wrapper] pilotpid: 24140
[2026-01-09 13:37:25] 2026-01-09 12:37:24,839 [wrapper] Pilot exit status: 0
[2026-01-09 13:37:25] 2026-01-09 12:37:24,853 [wrapper] pandaids: 6963186837
[2026-01-09 13:37:25] 2026-01-09 12:37:24,887 [wrapper] cleanup supervisor_pilot 14982 24141
[2026-01-09 13:37:25] 2026-01-09 12:37:24,892 [wrapper] Test setup, not cleaning
[2026-01-09 13:37:25] 2026-01-09 12:37:24,896 [wrapper] apfmon messages muted
[2026-01-09 13:37:25] 2026-01-09 12:37:24,900 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:37:25] 2026-01-09 12:37:24,904 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:37:25]  *** Error codes and diagnostics ***
[2026-01-09 13:37:25]     "exeErrorCode": 0,
[2026-01-09 13:37:25]     "exeErrorDiag": "",
[2026-01-09 13:37:25]     "pilotErrorCode": 0,
[2026-01-09 13:37:25]     "pilotErrorDiag": "",
[2026-01-09 13:37:25]  *** Listing of results directory ***
[2026-01-09 13:37:25] total 434452
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 13:37:25] -rwx------. 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc       100 Jan  9 10:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:37:25] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 10:56 run_atlas
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc       105 Jan  9 10:56 job.xml
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc      6390 Jan  9 10:56 init_data.xml
[2026-01-09 13:37:25] -rw-r--r--. 2 boinc boinc 223557319 Jan  9 10:56 EVNT.47898824._001408.pool.root.1
[2026-01-09 13:37:25] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:56 start_atlas.sh
[2026-01-09 13:37:25] drwxrwx--x. 2 boinc boinc        68 Jan  9 10:56 shared
[2026-01-09 13:37:25] -rw-r--r--. 2 boinc boinc    592402 Jan  9 10:56 input.tar.gz
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc         0 Jan  9 10:56 boinc_lockfile
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc      2519 Jan  9 10:56 pandaJob.out
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc    989751 Jan  9 10:56 agis_schedconf.cvmfs.json
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc   1516240 Jan  9 10:56 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:37:25] drwx------. 5 boinc boinc      4096 Jan  9 10:56 pilot3
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc 214042058 Jan  9 13:36 HITS.47898826._036745.pool.root.1
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc       529 Jan  9 13:36 boinc_task_state.xml
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc        95 Jan  9 13:36 pilot_heartbeat.json
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc      1008 Jan  9 13:36 memory_monitor_summary.json
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc    402046 Jan  9 13:36 log.47898826._036745.job.log.tgz.1
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc      7765 Jan  9 13:36 heartbeat.json
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc      8192 Jan  9 13:36 boinc_mmap_file
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc        27 Jan  9 13:36 wrapper_checkpoint.txt
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc       745 Jan  9 13:37 pilotlog.txt
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc   1289417 Jan  9 13:37 log.47898826._036745.job.log.1
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc       357 Jan  9 13:37 output.list
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc       620 Jan  9 13:37 runtime_log
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc   1710080 Jan  9 13:37 result.tar.gz
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc       652 Jan  9 13:37 yMSMDmO0Fy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmIggKDmVT1Lfn.diag
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc      8816 Jan  9 13:37 runtime_log.err
[2026-01-09 13:37:25] -rw-r--r--. 1 boinc boinc     21168 Jan  9 13:37 stderr.txt
[2026-01-09 13:37:25] HITS file was successfully produced:
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc 214042058 Jan  9 13:36 shared/HITS.pool.root.1
[2026-01-09 13:37:25]  *** Contents of shared directory: ***
[2026-01-09 13:37:25] total 429616
[2026-01-09 13:37:25] -rw-r--r--. 2 boinc boinc 223557319 Jan  9 10:56 ATLAS.root_0
[2026-01-09 13:37:25] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:56 start_atlas.sh
[2026-01-09 13:37:25] -rw-r--r--. 2 boinc boinc    592402 Jan  9 10:56 input.tar.gz
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc 214042058 Jan  9 13:36 HITS.pool.root.1
[2026-01-09 13:37:25] -rw-------. 1 boinc boinc   1710080 Jan  9 13:37 result.tar.gz
13:37:26 (20421): run_atlas exited; CPU time 71764.155550
13:37:26 (20421): called boinc_finish(0)

</stderr_txt>
]]>

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