Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:22:45 (3682): wrapper (7.7.26015): starting
10:22:45 (3682): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:22:45] Arguments: --nthreads 8
[2026-01-09 10:22:45] Threads: 8
[2026-01-09 10:22:45] Checking for CVMFS
[2026-01-09 10:22:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:22:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:22:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:22:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:22:45] 2.11.2.0 18097 35229 122744 154938 2 56 19918551 25165825 0 130560 0 14837994 99.745 12793037 2609 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 10:22:45] CVMFS is ok
[2026-01-09 10:22:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:22:45] Checking for apptainer binary...
[2026-01-09 10:22:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:22:45] Running /usr/bin/apptainer --version
[2026-01-09 10:22:45] apptainer version 1.3.2-1.el7
[2026-01-09 10:22:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:22:47] cg-vwn387.simple-grid.lan
[2026-01-09 10:22:47] apptainer works
[2026-01-09 10:22:47] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:22:47] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:22:47] Starting ATLAS job with PandaID=6963186555
[2026-01-09 10:22:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:22:25]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:22:25] 2026-01-09 12:21:18,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:22:25] 2026-01-09 12:21:18,973 | INFO     | time since job start (10696s) is within the limit (349056.0s)
[2026-01-09 13:22:25] 2026-01-09 12:21:18,973 | INFO     | 10698s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 13:22:25] 2026-01-09 12:21:20,552 | INFO     | monitor loop #722: job 0:6963186555 is in state 'finished'
[2026-01-09 13:22:25] 2026-01-09 12:21:20,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:22:25] 2026-01-09 12:21:20,979 | INFO     | time since job start (10698s) is within the limit (349056.0s)
[2026-01-09 13:22:25] 2026-01-09 12:21:22,985 | INFO     | time since job start (10700s) is within the limit (349056.0s)
[2026-01-09 13:22:25] 2026-01-09 12:21:23,055 | INFO     | monitor loop #723: job 0:6963186555 is in state 'finished'
[2026-01-09 13:22:25] 2026-01-09 12:21:23,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,350 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 13:22:25] 2026-01-09 12:21:24,352 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 13:22:25] 2026-01-09 12:21:24,354 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6963186555/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,355 | INFO     | extracted standard info from prmon json
[2026-01-09 13:22:25] 2026-01-09 12:21:24,355 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:22:25] 2026-01-09 12:21:24,355 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:22:25] 2026-01-09 12:21:24,355 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:22:25] 2026-01-09 12:21:24,355 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:22:25] 2026-01-09 12:21:24,360 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:22:25] 2026-01-09 12:21:24,360 | INFO     | sum of square deviations: 1661798600.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,361 | INFO     | sum of deviations: -9033451570.000002
[2026-01-09 13:22:25] 2026-01-09 12:21:24,362 | INFO     | mean x: 1767955921.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,362 | INFO     | mean y: 2549024.8571428573
[2026-01-09 13:22:25] 2026-01-09 12:21:24,362 | INFO     | intersect: 9613066322.3493
[2026-01-09 13:22:25] 2026-01-09 12:21:24,362 | INFO     | chi2: 1.724129998173315
[2026-01-09 13:22:25] 2026-01-09 12:21:24,363 | INFO     | sum of square deviations: 1523386702.5
[2026-01-09 13:22:25] 2026-01-09 12:21:24,364 | INFO     | sum of deviations: -8355168047.999999
[2026-01-09 13:22:25] 2026-01-09 12:21:24,364 | INFO     | mean x: 1767955768.5
[2026-01-09 13:22:25] 2026-01-09 12:21:24,365 | INFO     | mean y: 2549772.376470588
[2026-01-09 13:22:25] 2026-01-09 12:21:24,365 | INFO     | intersect: 9699081534.802357
[2026-01-09 13:22:25] 2026-01-09 12:21:24,365 | INFO     | chi2: 1.7239172925388913
[2026-01-09 13:22:25] 2026-01-09 12:21:24,365 | INFO     | current chi2=1.7239172925388913 (change=0.012336983559767409 %)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,365 | INFO     | right removable region: 169
[2026-01-09 13:22:25] 2026-01-09 12:21:24,366 | INFO     | sum of square deviations: 1523386702.5
[2026-01-09 13:22:25] 2026-01-09 12:21:24,367 | INFO     | sum of deviations: -36761485513.5
[2026-01-09 13:22:25] 2026-01-09 12:21:24,367 | INFO     | mean x: 1767956073.5
[2026-01-09 13:22:25] 2026-01-09 12:21:24,367 | INFO     | mean y: 2579185.7470588237
[2026-01-09 13:22:25] 2026-01-09 12:21:24,368 | INFO     | intersect: 42665871098.310265
[2026-01-09 13:22:25] 2026-01-09 12:21:24,368 | INFO     | chi2: 0.1826623596632502
[2026-01-09 13:22:25] 2026-01-09 12:21:24,368 | INFO     | current chi2=0.1826623596632502 (change=89.40553439376511 %)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,369 | INFO     | sum of square deviations: 1392881930.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,370 | INFO     | sum of deviations: -37175921130.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,370 | INFO     | mean x: 1767956226.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,370 | INFO     | mean y: 2579609.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,370 | INFO     | intersect: 47189207422.506386
[2026-01-09 13:22:25] 2026-01-09 12:21:24,371 | INFO     | chi2: 0.15696922366514768
[2026-01-09 13:22:25] 2026-01-09 12:21:24,371 | INFO     | current chi2=0.15696922366514768 (change=14.065917053447393 %)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,371 | INFO     | left removable region: 20
[2026-01-09 13:22:25] 2026-01-09 12:21:24,371 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,372 | INFO     | sum of deviations: -27138572186.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,373 | INFO     | mean x: 1767956348.0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,373 | INFO     | mean y: 2570135.4161073826
[2026-01-09 13:22:25] 2026-01-09 12:21:24,373 | INFO     | intersect: 46780485716.63759
[2026-01-09 13:22:25] 2026-01-09 12:21:24,373 | INFO     | chi2: 0.1475816941689778
[2026-01-09 13:22:25] 2026-01-09 12:21:24,373 | INFO     | current memory leak: -26.46 B/s (using 149 data points, chi2=0.15)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,374 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,374 | INFO     | ..............................
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . Timing measurements:
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . get job = 0 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . initial setup = 1 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . payload setup = 7 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . stage-in = 0 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . payload execution = 10665 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . stage-out = 1 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | . log creation = 0 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,375 | INFO     | ..............................
[2026-01-09 13:22:25] 2026-01-09 12:21:24,495 | INFO     | 
[2026-01-09 13:22:25] 2026-01-09 12:21:24,495 | INFO     | job summary report
[2026-01-09 13:22:25] 2026-01-09 12:21:24,495 | INFO     | --------------------------------------------------
[2026-01-09 13:22:25] 2026-01-09 12:21:24,495 | INFO     | PanDA job id: 6963186555
[2026-01-09 13:22:25] 2026-01-09 12:21:24,495 | INFO     | task id: 47898826
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | errors: (none)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | pilot state: finished 
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | transexitcode: 0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | exeerrorcode: 0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | exeerrordiag: 
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | exitcode: 0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | exitmsg: OK
[2026-01-09 13:22:25] 2026-01-09 12:21:24,496 | INFO     | cpuconsumptiontime: 80224 s
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | nevents: 400
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | neventsw: 0
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | pid: 13839
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | pgrp: 13839
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | corecount: 8
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | event service: False
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | sizes: {0: 2283971, 1: 2283971, 6: 2284261, 11: 2284289, 10676: 2312973, 10678: 2322157, 10685: 2322359}
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | --------------------------------------------------
[2026-01-09 13:22:25] 2026-01-09 12:21:24,497 | INFO     | 
[2026-01-09 13:22:25] 2026-01-09 12:21:24,498 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2026-01-09 13:22:25] 2026-01-09 12:21:24,529 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,529 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,529 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,529 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,531 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,531 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,531 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:22:25] 2026-01-09 12:21:24,531 | INFO     | job 6963186555 has completed (purged errors)
[2026-01-09 13:22:25] 2026-01-09 12:21:24,531 | INFO     | overall cleanup function is called
[2026-01-09 13:22:25] 2026-01-09 12:21:25,539 | INFO     | --- collectZombieJob: --- 10, [13839]
[2026-01-09 13:22:25] 2026-01-09 12:21:25,540 | INFO     | zombie collector waiting for pid 13839
[2026-01-09 13:22:25] 2026-01-09 12:21:25,540 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:22:25] 2026-01-09 12:21:25,540 | INFO     | collected zombie processes
[2026-01-09 13:22:25] 2026-01-09 12:21:25,540 | INFO     | will attempt to kill all subprocesses of pid=13839
[2026-01-09 13:22:25] 2026-01-09 12:21:25,601 | INFO     | process IDs to be killed: [13839] (in reverse order)
[2026-01-09 13:22:25] 2026-01-09 12:21:25,649 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:22:25] 2026-01-09 12:21:25,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:22:25] 2026-01-09 12:21:25,651 | INFO     | did not find any defunct processes belonging to 13839
[2026-01-09 13:22:25] 2026-01-09 12:21:25,653 | INFO     | did not find any defunct processes belonging to 13839
[2026-01-09 13:22:25] 2026-01-09 12:21:25,653 | INFO     | ready for new job
[2026-01-09 13:22:25] 2026-01-09 12:21:25,653 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:22:25] 2026-01-09 12:21:25,655 | INFO     | ***************************************
[2026-01-09 13:22:25] 2026-01-09 12:21:25,655 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:22:25] 2026-01-09 12:21:25,655 | INFO     | ***************************************
[2026-01-09 13:22:25] 2026-01-09 12:21:25,655 | INFO     | 
[2026-01-09 13:22:25] 2026-01-09 12:21:25,656 | INFO     | pilot is running in a VM
[2026-01-09 13:22:25] 2026-01-09 12:21:25,656 | INFO     | architecture information:
[2026-01-09 13:22:25] 2026-01-09 12:21:25,657 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:22:25] 2026-01-09 12:21:25,688 | INFO     | cat /etc/os-release:
[2026-01-09 13:22:25] NAME="CentOS Linux"
[2026-01-09 13:22:25] VERSION="7 (Core)"
[2026-01-09 13:22:25] ID="centos"
[2026-01-09 13:22:25] ID_LIKE="rhel fedora"
[2026-01-09 13:22:25] VERSION_ID="7"
[2026-01-09 13:22:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:22:25] ANSI_COLOR="0;31"
[2026-01-09 13:22:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:22:25] HOME_URL="https://www.centos.org/"
[2026-01-09 13:22:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:22:25] 
[2026-01-09 13:22:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:22:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:22:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:22:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:22:25] 
[2026-01-09 13:22:25] 2026-01-09 12:21:25,689 | INFO     | ***************************************
[2026-01-09 13:22:25] 2026-01-09 12:21:26,192 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2026-01-09 13:22:25] 2026-01-09 12:21:26,216 | INFO     | sufficient remaining disk space (498116591616 B)
[2026-01-09 13:22:25] 2026-01-09 12:21:26,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:22:25] 2026-01-09 12:21:26,216 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:22:25] 2026-01-09 12:21:26,216 | INFO     | update_server=False
[2026-01-09 13:22:25] 2026-01-09 12:21:26,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:22:25] 2026-01-09 12:21:26,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:22:25] 2026-01-09 12:21:26,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:22:25] 2026-01-09 12:21:26,564 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:22:25] 2026-01-09 12:21:26,565 | INFO     | aborting loop
[2026-01-09 13:22:25] 2026-01-09 12:21:26,826 | INFO     | all data control threads have been joined
[2026-01-09 13:22:25] 2026-01-09 12:21:27,123 | INFO     | all payload control threads have been joined
[2026-01-09 13:22:25] 2026-01-09 12:21:27,223 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,223 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,570 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,696 | INFO     | all job control threads have been joined
[2026-01-09 13:22:25] 2026-01-09 12:21:27,756 | INFO     | [job] validate thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,772 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,832 | INFO     | [data] control thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,883 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,913 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,956 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:27,989 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:28,129 | INFO     | [payload] control thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:28,229 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:28,346 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:28,446 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:22:25] 2026-01-09 12:21:28,562 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:28,702 | INFO     | [job] control thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:32,459 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:22:25] 2026-01-09 12:21:56,083 | INFO     | PID=7409 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 13:22:25] 2026-01-09 12:21:56,084 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:22:25] 2026-01-09 12:21:56,084 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:22:25] 2026-01-09 12:21:56,084 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:22:25] 2026-01-09 12:22:19,935 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:22:25] 2026-01-09 12:22:20,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139955572897600)>', '<ExcThread(monitor, started 139954973820672)>']
[2026-01-09 13:22:25] 2026-01-09 12:22:21,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:22:25] 2026-01-09 12:22:21,213 | INFO     | [monitor] control thread has ended
[2026-01-09 13:22:25] 2026-01-09 12:22:25,419 | INFO     | all workflow threads have been joined
[2026-01-09 13:22:25] 2026-01-09 12:22:25,419 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:22:25] 2026-01-09 12:22:25,420 | INFO     | traces error code: 0
[2026-01-09 13:22:25] 2026-01-09 12:22:25,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:22:25] 2026-01-09 12:22:25,566 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:22:25] 2026-01-09 12:22:25,573 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:22:25] 2026-01-09 12:22:25,578 [wrapper] pilotpid: 7409
[2026-01-09 13:22:25] 2026-01-09 12:22:25,586 [wrapper] Pilot exit status: 0
[2026-01-09 13:22:25] 2026-01-09 12:22:25,610 [wrapper] pandaids: 6963186555
[2026-01-09 13:22:25] 2026-01-09 12:22:25,648 [wrapper] cleanup supervisor_pilot 31354 7410
[2026-01-09 13:22:25] 2026-01-09 12:22:25,656 [wrapper] Test setup, not cleaning
[2026-01-09 13:22:25] 2026-01-09 12:22:25,660 [wrapper] apfmon messages muted
[2026-01-09 13:22:25] 2026-01-09 12:22:25,664 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:22:25] 2026-01-09 12:22:25,668 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:22:25]  *** Error codes and diagnostics ***
[2026-01-09 13:22:25]     "exeErrorCode": 0,
[2026-01-09 13:22:25]     "exeErrorDiag": "",
[2026-01-09 13:22:25]     "pilotErrorCode": 0,
[2026-01-09 13:22:25]     "pilotErrorDiag": "",
[2026-01-09 13:22:25]  *** Listing of results directory ***
[2026-01-09 13:22:25] total 450560
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 13:22:25] -rwx------. 1 boinc boinc     36322 Jan  9 01:58 runpilot2-wrapper.sh
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc      5112 Jan  9 02:01 queuedata.json
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc       100 Jan  9 10:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:22:25] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 10:22 run_atlas
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc       105 Jan  9 10:22 job.xml
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc      6392 Jan  9 10:22 init_data.xml
[2026-01-09 13:22:25] -rw-r--r--. 2 boinc boinc 226805407 Jan  9 10:22 EVNT.47898824._001400.pool.root.1
[2026-01-09 13:22:25] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:22 start_atlas.sh
[2026-01-09 13:22:25] drwxrwx--x. 2 boinc boinc        68 Jan  9 10:22 shared
[2026-01-09 13:22:25] -rw-r--r--. 2 boinc boinc    592400 Jan  9 10:22 input.tar.gz
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc         0 Jan  9 10:22 boinc_lockfile
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc      2519 Jan  9 10:22 pandaJob.out
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc    989751 Jan  9 10:23 agis_schedconf.cvmfs.json
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc   1516240 Jan  9 10:23 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:22:25] drwx------. 5 boinc boinc      4096 Jan  9 10:23 pilot3
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc 227023599 Jan  9 13:20 HITS.47898826._036531.pool.root.1
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc       531 Jan  9 13:20 boinc_task_state.xml
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc      1014 Jan  9 13:21 memory_monitor_summary.json
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc        95 Jan  9 13:21 pilot_heartbeat.json
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc    399704 Jan  9 13:21 log.47898826._036531.job.log.tgz.1
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc      7775 Jan  9 13:21 heartbeat.json
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc      8192 Jan  9 13:22 boinc_mmap_file
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc        28 Jan  9 13:22 wrapper_checkpoint.txt
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc      4809 Jan  9 13:22 pilotlog.txt
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc   1424826 Jan  9 13:22 log.47898826._036531.job.log.1
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc       357 Jan  9 13:22 output.list
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc       620 Jan  9 13:22 runtime_log
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc   1843200 Jan  9 13:22 result.tar.gz
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc      8833 Jan  9 13:22 runtime_log.err
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc       656 Jan  9 13:22 QAcNDmN0Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXulKDmhtLecn.diag
[2026-01-09 13:22:25] -rw-r--r--. 1 boinc boinc     20985 Jan  9 13:22 stderr.txt
[2026-01-09 13:22:25] HITS file was successfully produced:
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc 227023599 Jan  9 13:20 shared/HITS.pool.root.1
[2026-01-09 13:22:25]  *** Contents of shared directory: ***
[2026-01-09 13:22:25] total 445592
[2026-01-09 13:22:25] -rw-r--r--. 2 boinc boinc 226805407 Jan  9 10:22 ATLAS.root_0
[2026-01-09 13:22:25] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:22 start_atlas.sh
[2026-01-09 13:22:25] -rw-r--r--. 2 boinc boinc    592400 Jan  9 10:22 input.tar.gz
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc 227023599 Jan  9 13:20 HITS.pool.root.1
[2026-01-09 13:22:25] -rw-------. 1 boinc boinc   1843200 Jan  9 13:22 result.tar.gz
13:22:27 (3682): run_atlas exited; CPU time 80296.960378
13:22:27 (3682): called boinc_finish(0)

</stderr_txt>
]]>

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