Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:37:59 (13134): wrapper (7.7.26015): starting
01:37:59 (13134): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 01:37:59] Arguments: --nthreads 12
[2026-01-09 01:37:59] Threads: 12
[2026-01-09 01:37:59] Checking for CVMFS
[2026-01-09 01:38:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 01:38:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 01:38:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 01:38:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 01:38:00] 2.11.2.0 723 180638 94908 154934 0 57 11614485 20275201 1 130560 0 70137933 99.901 10356456 36038 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 01:38:00] CVMFS is ok
[2026-01-09 01:38:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 01:38:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 01:38:00] Further information can be found at the LHC@home message board.
[2026-01-09 01:38:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 01:38:00] Checking for apptainer binary...
[2026-01-09 01:38:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 01:38:00] Running /usr/bin/apptainer --version
[2026-01-09 01:38:00] apptainer version 1.3.2-1.el7
[2026-01-09 01:38:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 01:38:01] c-205-1.aglt2.org
[2026-01-09 01:38:01] apptainer works
[2026-01-09 01:38:01] Set ATHENA_PROC_NUMBER=12
[2026-01-09 01:38:01] Set ATHENA_CORE_NUMBER=12
[2026-01-09 01:38:01] Starting ATLAS job with PandaID=6963167989
[2026-01-09 01:38:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 03:19:55]  *** The last 200 lines of the pilot log: ***
[2026-01-09 03:19:55]  filetype=log
[2026-01-09 03:19:55]  guid=30214a5f-8178-44a4-accd-52105089416b
[2026-01-09 03:19:55]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-01-09 03:19:55]  is_altstaged=None
[2026-01-09 03:19:55]  is_tar=False
[2026-01-09 03:19:55]  lfn=log.47898826._036191.job.log.tgz.1
[2026-01-09 03:19:55]  mtime=0
[2026-01-09 03:19:55]  protocol_id=None
[2026-01-09 03:19:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 03:19:55]  replicas=None
[2026-01-09 03:19:55]  scope=mc23_13p6TeV
[2026-01-09 03:19:55]  status=None
[2026-01-09 03:19:55]  status_code=0
[2026-01-09 03:19:55]  storage_token=
[2026-01-09 03:19:55]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963167989/log.47898826._036191.job.log.tgz.1
[2026-01-09 03:19:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/01/log.47898826._036191.job.log.tgz.1
[2026-01-09 03:19:55]  workdir=None
[2026-01-09 03:19:55] ]
[2026-01-09 03:19:55] 2026-01-09 08:19:19,883 | INFO     | transferring file log.47898826._036191.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963167989/log.47898826._036191.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 03:19:55] 2026-01-09 08:19:19,884 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963167989/log.47898826._036191.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._036191.job
[2026-01-09 03:19:55] 2026-01-09 08:19:19,898 | INFO     | adding to output.list: log.47898826._036191.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/01/log.47898826._036191.job.log.tg
[2026-01-09 03:19:55] 2026-01-09 08:19:19,898 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 03:19:55] 2026-01-09 08:19:19,898 | INFO     | summary of transferred files:
[2026-01-09 03:19:55] 2026-01-09 08:19:19,899 | INFO     |  -- lfn=log.47898826._036191.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 03:19:55] 2026-01-09 08:19:19,899 | INFO     | stage-out finished correctly
[2026-01-09 03:19:55] 2026-01-09 08:19:19,984 | INFO     | time since job start (6063s) is within the limit (349056.0s)
[2026-01-09 03:19:55] 2026-01-09 08:19:20,180 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 03:19:55] 2026-01-09 08:19:20,254 | INFO     | job 6963167989 has state=finished
[2026-01-09 03:19:55] 2026-01-09 08:19:20,254 | INFO     | preparing for final server update for job 6963167989 in state='finished'
[2026-01-09 03:19:55] 2026-01-09 08:19:20,255 | INFO     | this job has now completed (state=finished)
[2026-01-09 03:19:55] 2026-01-09 08:19:20,255 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 03:19:55] 2026-01-09 08:19:20,255 | INFO     | log transfer has been attempted: DONE
[2026-01-09 03:19:55] 2026-01-09 08:19:20,255 | INFO     | job 6963167989 has finished - writing final server update
[2026-01-09 03:19:55] 2026-01-09 08:19:20,255 | INFO     | total number of processed events: 400 (read)
[2026-01-09 03:19:55] 2026-01-09 08:19:20,256 | INFO     | executing command: lscpu
[2026-01-09 03:19:55] 2026-01-09 08:19:20,275 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 03:19:55] 2026-01-09 08:19:21,159 | INFO     | monitor loop #449: job 0:6963167989 is in state 'finished'
[2026-01-09 03:19:55] 2026-01-09 08:19:21,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 03:19:55] 2026-01-09 08:19:21,989 | INFO     | time since job start (6065s) is within the limit (349056.0s)
[2026-01-09 03:19:55] 2026-01-09 08:19:23,374 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 03:19:55] 2026-01-09 08:19:23,377 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2383.4166666666665
[2026-01-09 03:19:55] 2026-01-09 08:19:23,378 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963167989/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 03:19:55] 2026-01-09 08:19:23,379 | INFO     | extracted standard info from prmon json
[2026-01-09 03:19:55] 2026-01-09 08:19:23,379 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 03:19:55] 2026-01-09 08:19:23,379 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 03:19:55] 2026-01-09 08:19:23,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 03:19:55] 2026-01-09 08:19:23,380 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 03:19:55] 2026-01-09 08:19:23,382 | INFO     | fitting pss+swap vs Time
[2026-01-09 03:19:55] 2026-01-09 08:19:23,382 | INFO     | sum of square deviations: 241429643.0
[2026-01-09 03:19:55] 2026-01-09 08:19:23,382 | INFO     | sum of deviations: -10194302462.499998
[2026-01-09 03:19:55] 2026-01-09 08:19:23,382 | INFO     | mean x: 1767943805.5
[2026-01-09 03:19:55] 2026-01-09 08:19:23,382 | INFO     | mean y: 2742184.1413043477
[2026-01-09 03:19:55] 2026-01-09 08:19:23,383 | INFO     | intersect: 74653699150.392
[2026-01-09 03:19:55] 2026-01-09 08:19:23,383 | INFO     | chi2: 0.10408839827612333
[2026-01-09 03:19:55] 2026-01-09 08:19:23,383 | INFO     | current memory leak: -42.22 B/s (using 92 data points, chi2=0.10)
[2026-01-09 03:19:55] 2026-01-09 08:19:23,383 | INFO     | could have reported an average CPU frequency of 2221 MHz (7 samples)
[2026-01-09 03:19:55] 2026-01-09 08:19:23,383 | INFO     | ..............................
[2026-01-09 03:19:55] 2026-01-09 08:19:23,383 | INFO     | . Timing measurements:
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | . get job = 0 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | . initial setup = 2 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | . payload setup = 7 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | . stage-in = 0 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | . payload execution = 6034 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | . stage-out = 0 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | . log creation = 0 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,384 | INFO     | ..............................
[2026-01-09 03:19:55] 2026-01-09 08:19:23,458 | INFO     | 
[2026-01-09 03:19:55] 2026-01-09 08:19:23,458 | INFO     | job summary report
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | --------------------------------------------------
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | PanDA job id: 6963167989
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | task id: 47898826
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | errors: (none)
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | pilot state: finished 
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | transexitcode: 0
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | exeerrorcode: 0
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | exeerrordiag: 
[2026-01-09 03:19:55] 2026-01-09 08:19:23,459 | INFO     | exitcode: 0
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | exitmsg: OK
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | cpuconsumptiontime: 66980 s
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | nevents: 400
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | neventsw: 0
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | pid: 23245
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | pgrp: 23245
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | corecount: 12
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | event service: False
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | sizes: {0: 2283970, 5: 2284232, 11: 2284288, 6045: 2311043, 6047: 2320097, 6051: 2320235}
[2026-01-09 03:19:55] 2026-01-09 08:19:23,460 | INFO     | --------------------------------------------------
[2026-01-09 03:19:55] 2026-01-09 08:19:23,461 | INFO     | 
[2026-01-09 03:19:55] 2026-01-09 08:19:23,461 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 03:19:55] 2026-01-09 08:19:23,473 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,473 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,473 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,474 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 03:19:55] 2026-01-09 08:19:23,475 | INFO     | job 6963167989 has completed (purged errors)
[2026-01-09 03:19:55] 2026-01-09 08:19:23,476 | INFO     | overall cleanup function is called
[2026-01-09 03:19:55] 2026-01-09 08:19:24,483 | INFO     | --- collectZombieJob: --- 10, [23245]
[2026-01-09 03:19:55] 2026-01-09 08:19:24,483 | INFO     | zombie collector waiting for pid 23245
[2026-01-09 03:19:55] 2026-01-09 08:19:24,483 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 03:19:55] 2026-01-09 08:19:24,484 | INFO     | collected zombie processes
[2026-01-09 03:19:55] 2026-01-09 08:19:24,484 | INFO     | will attempt to kill all subprocesses of pid=23245
[2026-01-09 03:19:55] 2026-01-09 08:19:24,607 | INFO     | process IDs to be killed: [23245] (in reverse order)
[2026-01-09 03:19:55] 2026-01-09 08:19:24,643 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 03:19:55] 2026-01-09 08:19:24,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 03:19:55] 2026-01-09 08:19:24,645 | INFO     | did not find any defunct processes belonging to 23245
[2026-01-09 03:19:55] 2026-01-09 08:19:24,648 | INFO     | did not find any defunct processes belonging to 23245
[2026-01-09 03:19:55] 2026-01-09 08:19:24,648 | INFO     | ready for new job
[2026-01-09 03:19:55] 2026-01-09 08:19:24,648 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 03:19:55] 2026-01-09 08:19:24,649 | INFO     | ***************************************
[2026-01-09 03:19:55] 2026-01-09 08:19:24,649 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 03:19:55] 2026-01-09 08:19:24,649 | INFO     | ***************************************
[2026-01-09 03:19:55] 2026-01-09 08:19:24,649 | INFO     | 
[2026-01-09 03:19:55] 2026-01-09 08:19:24,650 | INFO     | architecture information:
[2026-01-09 03:19:55] 2026-01-09 08:19:24,650 | INFO     | executing command: cat /etc/os-release
[2026-01-09 03:19:55] 2026-01-09 08:19:24,660 | INFO     | cat /etc/os-release:
[2026-01-09 03:19:55] NAME="CentOS Linux"
[2026-01-09 03:19:55] VERSION="7 (Core)"
[2026-01-09 03:19:55] ID="centos"
[2026-01-09 03:19:55] ID_LIKE="rhel fedora"
[2026-01-09 03:19:55] VERSION_ID="7"
[2026-01-09 03:19:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 03:19:55] ANSI_COLOR="0;31"
[2026-01-09 03:19:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 03:19:55] HOME_URL="https://www.centos.org/"
[2026-01-09 03:19:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 03:19:55] 
[2026-01-09 03:19:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 03:19:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 03:19:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 03:19:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 03:19:55] 
[2026-01-09 03:19:55] 2026-01-09 08:19:24,660 | INFO     | ***************************************
[2026-01-09 03:19:55] 2026-01-09 08:19:25,163 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 03:19:55] 2026-01-09 08:19:25,173 | INFO     | sufficient remaining disk space (29432479744 B)
[2026-01-09 03:19:55] 2026-01-09 08:19:25,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 03:19:55] 2026-01-09 08:19:25,173 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 03:19:55] 2026-01-09 08:19:25,173 | INFO     | update_server=False
[2026-01-09 03:19:55] 2026-01-09 08:19:25,174 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 03:19:55] 2026-01-09 08:19:25,174 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:19:55] 2026-01-09 08:19:25,174 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:19:55] 2026-01-09 08:19:25,174 | INFO     | aborting loop
[2026-01-09 03:19:55] 2026-01-09 08:19:25,294 | INFO     | all job control threads have been joined
[2026-01-09 03:19:55] 2026-01-09 08:19:25,308 | INFO     | all payload control threads have been joined
[2026-01-09 03:19:55] 2026-01-09 08:19:25,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 03:19:55] 2026-01-09 08:19:25,657 | INFO     | all data control threads have been joined
[2026-01-09 03:19:55] 2026-01-09 08:19:25,997 | INFO     | [monitor] cgroup control has ended
[2026-01-09 03:19:55] 2026-01-09 08:19:26,179 | INFO     | [job] retrieve thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,179 | INFO     | [job] job monitor thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,179 | INFO     | [job] queue monitor thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,183 | INFO     | [payload] failed_post thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,203 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,259 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 03:19:55] 2026-01-09 08:19:26,299 | INFO     | [job] control thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,313 | INFO     | [payload] control thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,587 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,662 | INFO     | [data] control thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,757 | INFO     | [job] validate thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,762 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,782 | INFO     | [payload] validate_post thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:26,804 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:27,485 | INFO     | [data] copytool_out thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:27,611 | INFO     | [data] copytool_in thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:30,264 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 03:19:55] 2026-01-09 08:19:30,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032621205312)>', '<ExcThread(monitor, started 140031838648064)>']
[2026-01-09 03:19:55] 2026-01-09 08:19:35,707 | INFO     | all workflow threads have been joined
[2026-01-09 03:19:55] 2026-01-09 08:19:35,707 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 03:19:55] 2026-01-09 08:19:35,707 | INFO     | traces error code: 0
[2026-01-09 03:19:55] 2026-01-09 08:19:35,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 03:19:55] 2026-01-09 08:19:55,193 | INFO     | PID=16856 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 03:19:55] 2026-01-09 08:19:55,194 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 03:19:55] 2026-01-09 08:19:55,194 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 03:19:55] 2026-01-09 08:19:55,194 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 03:19:55] 2026-01-09 08:19:55,194 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 03:19:55] 2026-01-09 08:19:55,194 | INFO     | [monitor] control thread has ended
[2026-01-09 03:19:55] 2026-01-09 08:19:55,282 [wrapper] ==== pilot stdout END ====
[2026-01-09 03:19:55] 2026-01-09 08:19:55,284 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 03:19:55] 2026-01-09 08:19:55,286 [wrapper] pilotpid: 16856
[2026-01-09 03:19:55] 2026-01-09 08:19:55,289 [wrapper] Pilot exit status: 0
[2026-01-09 03:19:55] 2026-01-09 08:19:55,297 [wrapper] pandaids: 6963167989
[2026-01-09 03:19:55] 2026-01-09 08:19:55,324 [wrapper] cleanup supervisor_pilot   859 16857
[2026-01-09 03:19:55] 2026-01-09 08:19:55,326 [wrapper] Test setup, not cleaning
[2026-01-09 03:19:55] 2026-01-09 08:19:55,328 [wrapper] apfmon messages muted
[2026-01-09 03:19:55] 2026-01-09 08:19:55,330 [wrapper] ==== wrapper stdout END ====
[2026-01-09 03:19:55] 2026-01-09 08:19:55,333 [wrapper] ==== wrapper stderr END ====
[2026-01-09 03:19:55]  *** Error codes and diagnostics ***
[2026-01-09 03:19:55]     "exeErrorCode": 0,
[2026-01-09 03:19:55]     "exeErrorDiag": "",
[2026-01-09 03:19:55]     "pilotErrorCode": 0,
[2026-01-09 03:19:55]     "pilotErrorDiag": "",
[2026-01-09 03:19:55]  *** Listing of results directory ***
[2026-01-09 03:19:55] total 442400
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 03:19:55] -rwx------ 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:59 queuedata.json
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas       100 Jan  9 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 03:19:55] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 01:37 run_atlas
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas       105 Jan  9 01:37 job.xml
[2026-01-09 03:19:55] -rw-r--r-- 2 boincer umatlas 225184492 Jan  9 01:37 EVNT.47898824._001386.pool.root.1
[2026-01-09 03:19:55] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 01:37 start_atlas.sh
[2026-01-09 03:19:55] drwxrwx--x 2 boincer umatlas      4096 Jan  9 01:37 shared
[2026-01-09 03:19:55] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 01:37 input.tar.gz
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas         0 Jan  9 01:37 boinc_lockfile
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas      2519 Jan  9 01:38 pandaJob.out
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas        57 Jan  9 01:38 setup.sh.local
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas    989771 Jan  9 01:38 agis_schedconf.cvmfs.json
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas   1516240 Jan  9 01:38 agis_ddmendpoints.agis.ALL.json
[2026-01-09 03:19:55] drwx------ 5 boincer umatlas      4096 Jan  9 01:38 pilot3
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 03:12 init_data.xml
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas 221379489 Jan  9 03:18 HITS.47898826._036191.pool.root.1
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas       529 Jan  9 03:18 boinc_task_state.xml
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas      1049 Jan  9 03:19 memory_monitor_summary.json
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas    413580 Jan  9 03:19 log.47898826._036191.job.log.tgz.1
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas      7853 Jan  9 03:19 heartbeat.json
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 03:19 boinc_mmap_file
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas        27 Jan  9 03:19 wrapper_checkpoint.txt
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas       745 Jan  9 03:19 pilotlog.txt
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas        95 Jan  9 03:19 pilot_heartbeat.json
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas    861144 Jan  9 03:19 log.47898826._036191.job.log.1
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas       357 Jan  9 03:19 output.list
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas       620 Jan  9 03:19 runtime_log
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas   1290240 Jan  9 03:19 result.tar.gz
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas      9339 Jan  9 03:19 runtime_log.err
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas       659 Jan  9 03:19 IpRMDmB0Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpslKDmkl6u3m.diag
[2026-01-09 03:19:55] -rw-r--r-- 1 boincer umatlas     21309 Jan  9 03:19 stderr.txt
[2026-01-09 03:19:55] HITS file was successfully produced:
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas 221379489 Jan  9 03:18 shared/HITS.pool.root.1
[2026-01-09 03:19:55]  *** Contents of shared directory: ***
[2026-01-09 03:19:55] total 437960
[2026-01-09 03:19:55] -rw-r--r-- 2 boincer umatlas 225184492 Jan  9 01:37 ATLAS.root_0
[2026-01-09 03:19:55] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 01:37 start_atlas.sh
[2026-01-09 03:19:55] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 01:37 input.tar.gz
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas 221379489 Jan  9 03:18 HITS.pool.root.1
[2026-01-09 03:19:55] -rw------- 1 boincer umatlas   1290240 Jan  9 03:19 result.tar.gz
03:19:57 (13134): run_atlas exited; CPU time 66954.667347
03:19:57 (13134): called boinc_finish(0)

</stderr_txt>
]]>

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