Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:35:11 (707934): wrapper (7.7.26015): starting
16:35:11 (707934): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 16:35:11] Arguments: --nthreads 4
[2026-01-09 16:35:11] Threads: 4
[2026-01-09 16:35:11] Checking for CVMFS
[2026-01-09 16:35:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:35:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:35:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:35:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:35:11] 2.9.2.0 211398 1714 86612 154948 1 188 36482297 36864001 0 130560 0 1267689 99.990 63181 3193 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 16:35:11] CVMFS is ok
[2026-01-09 16:35:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:35:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:35:11] Further information can be found at the LHC@home message board.
[2026-01-09 16:35:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:35:11] Checking for apptainer binary...
[2026-01-09 16:35:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:35:11] Running /usr/bin/apptainer --version
[2026-01-09 16:35:11] apptainer version 1.4.1-1.1
[2026-01-09 16:35:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:35:11] thA381
[2026-01-09 16:35:11] apptainer works
[2026-01-09 16:35:11] Set ATHENA_PROC_NUMBER=4
[2026-01-09 16:35:11] Set ATHENA_CORE_NUMBER=4
[2026-01-09 16:35:11] Starting ATLAS job with PandaID=6963167692
[2026-01-09 16:35:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:16:46]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | job 6963167692 has completed (purged errors)
[2026-01-09 18:16:46] 2026-01-09 17:16:14,313 | INFO     | overall cleanup function is called
[2026-01-09 18:16:46] 2026-01-09 17:16:15,320 | INFO     | --- collectZombieJob: --- 10, [718333]
[2026-01-09 18:16:46] 2026-01-09 17:16:15,320 | INFO     | zombie collector waiting for pid 718333
[2026-01-09 18:16:46] 2026-01-09 17:16:15,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:16:46] 2026-01-09 17:16:15,320 | INFO     | collected zombie processes
[2026-01-09 18:16:46] 2026-01-09 17:16:15,320 | INFO     | will attempt to kill all subprocesses of pid=718333
[2026-01-09 18:16:46] 2026-01-09 17:16:15,364 | INFO     | process IDs to be killed: [718333] (in reverse order)
[2026-01-09 18:16:46] 2026-01-09 17:16:15,398 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:16:46] 2026-01-09 17:16:15,398 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:16:46] 2026-01-09 17:16:15,400 | INFO     | did not find any defunct processes belonging to 718333
[2026-01-09 18:16:46] 2026-01-09 17:16:15,401 | INFO     | did not find any defunct processes belonging to 718333
[2026-01-09 18:16:46] 2026-01-09 17:16:15,401 | INFO     | ready for new job
[2026-01-09 18:16:46] 2026-01-09 17:16:15,401 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:16:46] 2026-01-09 17:16:15,402 | INFO     | ***************************************
[2026-01-09 18:16:46] 2026-01-09 17:16:15,402 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:16:46] 2026-01-09 17:16:15,402 | INFO     | ***************************************
[2026-01-09 18:16:46] 2026-01-09 17:16:15,402 | INFO     | 
[2026-01-09 18:16:46] 2026-01-09 17:16:15,402 | INFO     | architecture information:
[2026-01-09 18:16:46] 2026-01-09 17:16:15,402 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:16:46] 2026-01-09 17:16:15,417 | INFO     | cat /etc/os-release:
[2026-01-09 18:16:46] NAME="CentOS Linux"
[2026-01-09 18:16:46] VERSION="7 (Core)"
[2026-01-09 18:16:46] ID="centos"
[2026-01-09 18:16:46] ID_LIKE="rhel fedora"
[2026-01-09 18:16:46] VERSION_ID="7"
[2026-01-09 18:16:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:16:46] ANSI_COLOR="0;31"
[2026-01-09 18:16:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:16:46] HOME_URL="https://www.centos.org/"
[2026-01-09 18:16:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:16:46] 
[2026-01-09 18:16:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:16:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:16:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:16:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:16:46] 
[2026-01-09 18:16:46] 2026-01-09 17:16:15,417 | INFO     | ***************************************
[2026-01-09 18:16:46] 2026-01-09 17:16:15,920 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 18:16:46] 2026-01-09 17:16:15,938 | INFO     | sufficient remaining disk space (222638899200 B)
[2026-01-09 18:16:46] 2026-01-09 17:16:15,938 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:16:46] 2026-01-09 17:16:15,938 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:16:46] 2026-01-09 17:16:15,938 | INFO     | update_server=False
[2026-01-09 18:16:46] 2026-01-09 17:16:15,938 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:16:46] 2026-01-09 17:16:15,938 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:16:46] 2026-01-09 17:16:16,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:16:46] 2026-01-09 17:16:16,113 | INFO     | aborting loop
[2026-01-09 18:16:46] 2026-01-09 17:16:16,779 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:16:46] 2026-01-09 17:16:16,830 | INFO     | all data control threads have been joined
[2026-01-09 18:16:46] 2026-01-09 17:16:16,944 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,003 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,045 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,118 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,243 | INFO     | all job control threads have been joined
[2026-01-09 18:16:46] 2026-01-09 17:16:17,333 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,405 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,422 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,425 | INFO     | all payload control threads have been joined
[2026-01-09 18:16:46] 2026-01-09 17:16:17,722 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:17,836 | INFO     | [data] control thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:18,080 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:18,249 | INFO     | [job] control thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:18,423 | INFO     | [job] validate thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:18,431 | INFO     | [payload] control thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:18,785 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:18,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:16:46] 2026-01-09 17:16:19,890 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:19,945 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:16:46] 2026-01-09 17:16:26,696 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:16:46] 2026-01-09 17:16:28,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140525252949824)>', '<ExcThread(monitor, started 140523947947776)>']
[2026-01-09 18:16:46] 2026-01-09 17:16:33,030 | INFO     | all workflow threads have been joined
[2026-01-09 18:16:46] 2026-01-09 17:16:33,030 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:16:46] 2026-01-09 17:16:33,031 | INFO     | traces error code: 0
[2026-01-09 18:16:46] 2026-01-09 17:16:33,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:16:46] 2026-01-09 17:16:45,819 | INFO     | PID=711730 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 18:16:46] 2026-01-09 17:16:45,819 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:16:46] 2026-01-09 17:16:45,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:16:46] 2026-01-09 17:16:45,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:16:46] 2026-01-09 17:16:45,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:16:46] 2026-01-09 17:16:45,820 | INFO     | [monitor] control thread has ended
[2026-01-09 18:16:46] 2026-01-09 17:16:45,897 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:16:46] 2026-01-09 17:16:45,901 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:16:46] 2026-01-09 17:16:45,905 [wrapper] pilotpid: 711730
[2026-01-09 18:16:46] 2026-01-09 17:16:45,909 [wrapper] Pilot exit status: 0
[2026-01-09 18:16:46] 2026-01-09 17:16:45,921 [wrapper] pandaids: 6963167692
[2026-01-09 18:16:46] 2026-01-09 17:16:45,943 [wrapper] cleanup supervisor_pilot  730605 711731
[2026-01-09 18:16:46] 2026-01-09 17:16:45,947 [wrapper] Test setup, not cleaning
[2026-01-09 18:16:46] 2026-01-09 17:16:45,951 [wrapper] apfmon messages muted
[2026-01-09 18:16:46] 2026-01-09 17:16:45,954 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:16:46] 2026-01-09 17:16:45,958 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:16:46]  *** Error codes and diagnostics ***
[2026-01-09 18:16:46]     "exeErrorCode": 0,
[2026-01-09 18:16:46]     "exeErrorDiag": "",
[2026-01-09 18:16:46]     "pilotErrorCode": 0,
[2026-01-09 18:16:46]     "pilotErrorDiag": "",
[2026-01-09 18:16:46]  *** Listing of results directory ***
[2026-01-09 18:16:46] total 443536
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 18:16:46] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc       100 Jan  9 16:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:16:46] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 16:35 run_atlas
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc       105 Jan  9 16:35 job.xml
[2026-01-09 18:16:46] -rw-r--r-- 2 boinc boinc 223126381 Jan  9 16:35 EVNT.47898824._001336.pool.root.1
[2026-01-09 18:16:46] -rw-r--r-- 2 boinc boinc    592399 Jan  9 16:35 input.tar.gz
[2026-01-09 18:16:46] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:35 start_atlas.sh
[2026-01-09 18:16:46] drwxrwx--x 2 boinc boinc      4096 Jan  9 16:35 shared
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:35 boinc_setup_complete
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc      6376 Jan  9 16:35 init_data.xml
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:35 boinc_lockfile
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc      2519 Jan  9 16:35 pandaJob.out
[2026-01-09 18:16:46] -rw------- 1 boinc boinc    989377 Jan  9 16:35 agis_schedconf.cvmfs.json
[2026-01-09 18:16:46] -rw------- 1 boinc boinc   1516240 Jan  9 16:35 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:16:46] drwx------ 5 boinc boinc      4096 Jan  9 16:35 pilot3
[2026-01-09 18:16:46] -rw------- 1 boinc boinc 224838248 Jan  9 18:15 HITS.47898826._035933.pool.root.1
[2026-01-09 18:16:46] -rw------- 1 boinc boinc        95 Jan  9 18:15 pilot_heartbeat.json
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc       530 Jan  9 18:15 boinc_task_state.xml
[2026-01-09 18:16:46] -rw------- 1 boinc boinc      1020 Jan  9 18:16 memory_monitor_summary.json
[2026-01-09 18:16:46] -rw------- 1 boinc boinc    281537 Jan  9 18:16 log.47898826._035933.job.log.tgz.1
[2026-01-09 18:16:46] -rw------- 1 boinc boinc      7758 Jan  9 18:16 heartbeat.json
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc        27 Jan  9 18:16 wrapper_checkpoint.txt
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc      8192 Jan  9 18:16 boinc_mmap_file
[2026-01-09 18:16:46] -rw------- 1 boinc boinc       746 Jan  9 18:16 pilotlog.txt
[2026-01-09 18:16:46] -rw------- 1 boinc boinc    876000 Jan  9 18:16 log.47898826._035933.job.log.1
[2026-01-09 18:16:46] -rw------- 1 boinc boinc       357 Jan  9 18:16 output.list
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc       620 Jan  9 18:16 runtime_log
[2026-01-09 18:16:46] -rw------- 1 boinc boinc   1177600 Jan  9 18:16 result.tar.gz
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc      8897 Jan  9 18:16 runtime_log.err
[2026-01-09 18:16:46] -rw------- 1 boinc boinc       659 Jan  9 18:16 gqFNDmzzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOrlKDmaW4nFo.diag
[2026-01-09 18:16:46] -rw-r--r-- 1 boinc boinc     11407 Jan  9 18:16 stderr.txt
[2026-01-09 18:16:46] HITS file was successfully produced:
[2026-01-09 18:16:46] -rw------- 1 boinc boinc 224838248 Jan  9 18:15 shared/HITS.pool.root.1
[2026-01-09 18:16:46]  *** Contents of shared directory: ***
[2026-01-09 18:16:46] total 439228
[2026-01-09 18:16:46] -rw-r--r-- 2 boinc boinc 223126381 Jan  9 16:35 ATLAS.root_0
[2026-01-09 18:16:46] -rw-r--r-- 2 boinc boinc    592399 Jan  9 16:35 input.tar.gz
[2026-01-09 18:16:46] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:35 start_atlas.sh
[2026-01-09 18:16:46] -rw------- 1 boinc boinc 224838248 Jan  9 18:15 HITS.pool.root.1
[2026-01-09 18:16:46] -rw------- 1 boinc boinc   1177600 Jan  9 18:16 result.tar.gz
18:16:47 (707934): run_atlas exited; CPU time 23101.691954
18:16:47 (707934): called boinc_finish(0)

</stderr_txt>
]]>

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