Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:05:04 (4063187): wrapper (7.7.26015): starting
00:05:04 (4063187): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 00:05:04] Arguments: --nthreads 3
[2026-01-10 00:05:04] Threads: 3
[2026-01-10 00:05:04] Checking for CVMFS
[2026-01-10 00:05:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:05:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:05:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:05:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:05:04] 2.9.2.0 3347489 2893 83252 154959 1 57 15526420 36864001 0 130560 0 1809749 99.988 109919 6176 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 00:05:04] CVMFS is ok
[2026-01-10 00:05:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:05:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:05:04] Further information can be found at the LHC@home message board.
[2026-01-10 00:05:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:05:04] Checking for apptainer binary...
[2026-01-10 00:05:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:05:04] Running /usr/bin/apptainer --version
[2026-01-10 00:05:04] apptainer version 1.4.1-1.1
[2026-01-10 00:05:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:05:04] thA325a
[2026-01-10 00:05:04] apptainer works
[2026-01-10 00:05:04] Set ATHENA_PROC_NUMBER=3
[2026-01-10 00:05:04] Set ATHENA_CORE_NUMBER=3
[2026-01-10 00:05:04] Starting ATLAS job with PandaID=6963167847
[2026-01-10 00:05:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:02:24]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:02:24] 2026-01-10 01:01:18,718 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | job 6963167847 has completed (purged errors)
[2026-01-10 02:02:24] 2026-01-10 01:01:18,719 | INFO     | overall cleanup function is called
[2026-01-10 02:02:24] 2026-01-10 01:01:19,724 | INFO     | --- collectZombieJob: --- 10, [4073364]
[2026-01-10 02:02:24] 2026-01-10 01:01:19,724 | INFO     | zombie collector waiting for pid 4073364
[2026-01-10 02:02:24] 2026-01-10 01:01:19,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:02:24] 2026-01-10 01:01:19,725 | INFO     | collected zombie processes
[2026-01-10 02:02:24] 2026-01-10 01:01:19,725 | INFO     | will attempt to kill all subprocesses of pid=4073364
[2026-01-10 02:02:24] 2026-01-10 01:01:19,775 | INFO     | process IDs to be killed: [4073364] (in reverse order)
[2026-01-10 02:02:24] 2026-01-10 01:01:19,801 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:02:24] 2026-01-10 01:01:19,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:02:24] 2026-01-10 01:01:19,803 | INFO     | did not find any defunct processes belonging to 4073364
[2026-01-10 02:02:24] 2026-01-10 01:01:19,804 | INFO     | did not find any defunct processes belonging to 4073364
[2026-01-10 02:02:24] 2026-01-10 01:01:19,804 | INFO     | ready for new job
[2026-01-10 02:02:24] 2026-01-10 01:01:19,805 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:02:24] 2026-01-10 01:01:19,805 | INFO     | ***************************************
[2026-01-10 02:02:24] 2026-01-10 01:01:19,805 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:02:24] 2026-01-10 01:01:19,805 | INFO     | ***************************************
[2026-01-10 02:02:24] 2026-01-10 01:01:19,805 | INFO     | 
[2026-01-10 02:02:24] 2026-01-10 01:01:19,806 | INFO     | architecture information:
[2026-01-10 02:02:24] 2026-01-10 01:01:19,806 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:02:24] 2026-01-10 01:01:19,815 | INFO     | cat /etc/os-release:
[2026-01-10 02:02:24] NAME="CentOS Linux"
[2026-01-10 02:02:24] VERSION="7 (Core)"
[2026-01-10 02:02:24] ID="centos"
[2026-01-10 02:02:24] ID_LIKE="rhel fedora"
[2026-01-10 02:02:24] VERSION_ID="7"
[2026-01-10 02:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:02:24] ANSI_COLOR="0;31"
[2026-01-10 02:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:02:24] HOME_URL="https://www.centos.org/"
[2026-01-10 02:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:02:24] 
[2026-01-10 02:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:02:24] 
[2026-01-10 02:02:24] 2026-01-10 01:01:19,815 | INFO     | ***************************************
[2026-01-10 02:02:24] 2026-01-10 01:01:20,318 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 02:02:24] 2026-01-10 01:01:20,330 | INFO     | sufficient remaining disk space (243567427584 B)
[2026-01-10 02:02:24] 2026-01-10 01:01:20,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | INFO     | update_server=False
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:02:24] 2026-01-10 01:01:20,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:02:24] 2026-01-10 01:01:20,385 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:02:24] 2026-01-10 01:01:20,694 | INFO     | all data control threads have been joined
[2026-01-10 02:02:24] 2026-01-10 01:01:20,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:02:24] 2026-01-10 01:01:20,798 | INFO     | aborting loop
[2026-01-10 02:02:24] 2026-01-10 01:01:21,265 | INFO     | all payload control threads have been joined
[2026-01-10 02:02:24] 2026-01-10 01:01:21,336 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:21,337 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:21,626 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:21,700 | INFO     | [data] control thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:21,803 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:21,833 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,002 | INFO     | all job control threads have been joined
[2026-01-10 02:02:24] 2026-01-10 01:01:22,118 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,146 | INFO     | [job] validate thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,204 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,260 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,270 | INFO     | [payload] control thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,337 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,518 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:22,918 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:23,008 | INFO     | [job] control thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:01:24,392 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:02:24] 2026-01-10 01:02:18,488 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:02:24] 2026-01-10 01:02:19,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661691078464)>', '<ExcThread(monitor, started 139661410273024)>']
[2026-01-10 02:02:24] 2026-01-10 01:02:20,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:02:24] 2026-01-10 01:02:20,644 | INFO     | [monitor] control thread has ended
[2026-01-10 02:02:24] 2026-01-10 01:02:24,765 | INFO     | all workflow threads have been joined
[2026-01-10 02:02:24] 2026-01-10 01:02:24,765 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:02:24] 2026-01-10 01:02:24,765 | INFO     | traces error code: 0
[2026-01-10 02:02:24] 2026-01-10 01:02:24,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:02:24] 2026-01-10 01:02:24,818 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:02:24] 2026-01-10 01:02:24,820 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:02:24] 2026-01-10 01:02:24,822 [wrapper] pilotpid: 4066916
[2026-01-10 02:02:24] 2026-01-10 01:02:24,825 [wrapper] Pilot exit status: 0
[2026-01-10 02:02:24] 2026-01-10 01:02:24,832 [wrapper] pandaids: 6963167847
[2026-01-10 02:02:24] 2026-01-10 01:02:24,849 [wrapper] cleanup supervisor_pilot 4088485 4066917
[2026-01-10 02:02:24] 2026-01-10 01:02:24,852 [wrapper] Test setup, not cleaning
[2026-01-10 02:02:24] 2026-01-10 01:02:24,854 [wrapper] apfmon messages muted
[2026-01-10 02:02:24] 2026-01-10 01:02:24,857 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:02:24] 2026-01-10 01:02:24,859 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:02:24]  *** Error codes and diagnostics ***
[2026-01-10 02:02:24]     "exeErrorCode": 0,
[2026-01-10 02:02:24]     "exeErrorDiag": "",
[2026-01-10 02:02:24]     "pilotErrorCode": 0,
[2026-01-10 02:02:24]     "pilotErrorDiag": "",
[2026-01-10 02:02:24]  *** Listing of results directory ***
[2026-01-10 02:02:24] total 442580
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 02:02:24] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc       100 Jan 10 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:02:24] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 00:05 run_atlas
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc       105 Jan 10 00:05 job.xml
[2026-01-10 02:02:24] -rw-r--r-- 2 boinc boinc 223320349 Jan 10 00:05 EVNT.47898824._001341.pool.root.1
[2026-01-10 02:02:24] drwxrwx--x 2 boinc boinc      4096 Jan 10 00:05 shared
[2026-01-10 02:02:24] -rw-r--r-- 2 boinc boinc    592397 Jan 10 00:05 input.tar.gz
[2026-01-10 02:02:24] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:05 start_atlas.sh
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:05 boinc_setup_complete
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc      6440 Jan 10 00:05 init_data.xml
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc         0 Jan 10 00:05 boinc_lockfile
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc      2517 Jan 10 00:05 pandaJob.out
[2026-01-10 02:02:24] -rw------- 1 boinc boinc    989375 Jan 10 00:05 agis_schedconf.cvmfs.json
[2026-01-10 02:02:24] -rw------- 1 boinc boinc   1516240 Jan 10 00:05 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:02:24] drwx------ 5 boinc boinc      4096 Jan 10 00:05 pilot3
[2026-01-10 02:02:24] -rw------- 1 boinc boinc        95 Jan 10 02:00 pilot_heartbeat.json
[2026-01-10 02:02:24] -rw------- 1 boinc boinc 223432839 Jan 10 02:00 HITS.47898826._036049.pool.root.1
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc       529 Jan 10 02:00 boinc_task_state.xml
[2026-01-10 02:02:24] -rw------- 1 boinc boinc      1019 Jan 10 02:01 memory_monitor_summary.json
[2026-01-10 02:02:24] -rw------- 1 boinc boinc    267930 Jan 10 02:01 log.47898826._036049.job.log.tgz.1
[2026-01-10 02:02:24] -rw------- 1 boinc boinc      7759 Jan 10 02:01 heartbeat.json
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc      8192 Jan 10 02:02 boinc_mmap_file
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc        27 Jan 10 02:02 wrapper_checkpoint.txt
[2026-01-10 02:02:24] -rw------- 1 boinc boinc      4556 Jan 10 02:02 pilotlog.txt
[2026-01-10 02:02:24] -rw------- 1 boinc boinc   1005697 Jan 10 02:02 log.47898826._036049.job.log.1
[2026-01-10 02:02:24] -rw------- 1 boinc boinc       357 Jan 10 02:02 output.list
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc       620 Jan 10 02:02 runtime_log
[2026-01-10 02:02:24] -rw------- 1 boinc boinc   1290240 Jan 10 02:02 result.tar.gz
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc      8902 Jan 10 02:02 runtime_log.err
[2026-01-10 02:02:24] -rw------- 1 boinc boinc       660 Jan 10 02:02 pPFODm0zFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvcgKDmEGJ3rn.diag
[2026-01-10 02:02:24] -rw-r--r-- 1 boinc boinc     12754 Jan 10 02:02 stderr.txt
[2026-01-10 02:02:24] HITS file was successfully produced:
[2026-01-10 02:02:24] -rw------- 1 boinc boinc 223432839 Jan 10 02:00 shared/HITS.pool.root.1
[2026-01-10 02:02:24]  *** Contents of shared directory: ***
[2026-01-10 02:02:24] total 438148
[2026-01-10 02:02:24] -rw-r--r-- 2 boinc boinc 223320349 Jan 10 00:05 ATLAS.root_0
[2026-01-10 02:02:24] -rw-r--r-- 2 boinc boinc    592397 Jan 10 00:05 input.tar.gz
[2026-01-10 02:02:24] -rw-r--r-- 2 boinc boinc     15847 Jan 10 00:05 start_atlas.sh
[2026-01-10 02:02:24] -rw------- 1 boinc boinc 223432839 Jan 10 02:00 HITS.pool.root.1
[2026-01-10 02:02:24] -rw------- 1 boinc boinc   1290240 Jan 10 02:02 result.tar.gz
02:02:47 (4063187): run_atlas exited; CPU time 20237.856401
02:02:47 (4063187): called boinc_finish(0)

</stderr_txt>
]]>

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