Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:17:48 (62274): wrapper (7.7.26015): starting
20:17:48 (62274): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 20:17:48] Arguments: --nthreads 3
[2026-01-09 20:17:48] Threads: 3
[2026-01-09 20:17:48] Checking for CVMFS
[2026-01-09 20:17:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:17:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:17:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:17:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:17:48] 2.9.2.0 3607278 2713 83640 154955 1 57 15997970 36864001 0 130560 0 1656189 99.986 111150 6579 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 20:17:48] CVMFS is ok
[2026-01-09 20:17:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:17:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:17:48] Further information can be found at the LHC@home message board.
[2026-01-09 20:17:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:17:48] Checking for apptainer binary...
[2026-01-09 20:17:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:17:48] Running /usr/bin/apptainer --version
[2026-01-09 20:17:48] apptainer version 1.4.1-1.1
[2026-01-09 20:17:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:17:48] thA312
[2026-01-09 20:17:48] apptainer works
[2026-01-09 20:17:48] Set ATHENA_PROC_NUMBER=3
[2026-01-09 20:17:48] Set ATHENA_CORE_NUMBER=3
[2026-01-09 20:17:48] Starting ATLAS job with PandaID=6963167683
[2026-01-09 20:17:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:20:08]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:20:08] 2026-01-09 21:19:12,211 | INFO     | 
[2026-01-09 22:20:08] 2026-01-09 21:19:12,211 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:20:08] 2026-01-09 21:19:12,223 | INFO     | job 6963167683 has completed (purged errors)
[2026-01-09 22:20:08] 2026-01-09 21:19:12,224 | INFO     | overall cleanup function is called
[2026-01-09 22:20:08] 2026-01-09 21:19:13,230 | INFO     | --- collectZombieJob: --- 10, [72442]
[2026-01-09 22:20:08] 2026-01-09 21:19:13,230 | INFO     | zombie collector waiting for pid 72442
[2026-01-09 22:20:08] 2026-01-09 21:19:13,230 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:20:08] 2026-01-09 21:19:13,230 | INFO     | collected zombie processes
[2026-01-09 22:20:08] 2026-01-09 21:19:13,230 | INFO     | will attempt to kill all subprocesses of pid=72442
[2026-01-09 22:20:08] 2026-01-09 21:19:13,281 | INFO     | process IDs to be killed: [72442] (in reverse order)
[2026-01-09 22:20:08] 2026-01-09 21:19:13,308 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:20:08] 2026-01-09 21:19:13,308 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:20:08] 2026-01-09 21:19:13,309 | INFO     | did not find any defunct processes belonging to 72442
[2026-01-09 22:20:08] 2026-01-09 21:19:13,311 | INFO     | did not find any defunct processes belonging to 72442
[2026-01-09 22:20:08] 2026-01-09 21:19:13,311 | INFO     | ready for new job
[2026-01-09 22:20:08] 2026-01-09 21:19:13,311 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:20:08] 2026-01-09 21:19:13,312 | INFO     | ***************************************
[2026-01-09 22:20:08] 2026-01-09 21:19:13,312 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:20:08] 2026-01-09 21:19:13,312 | INFO     | ***************************************
[2026-01-09 22:20:08] 2026-01-09 21:19:13,312 | INFO     | 
[2026-01-09 22:20:08] 2026-01-09 21:19:13,312 | INFO     | architecture information:
[2026-01-09 22:20:08] 2026-01-09 21:19:13,312 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:20:08] 2026-01-09 21:19:13,322 | INFO     | cat /etc/os-release:
[2026-01-09 22:20:08] NAME="CentOS Linux"
[2026-01-09 22:20:08] VERSION="7 (Core)"
[2026-01-09 22:20:08] ID="centos"
[2026-01-09 22:20:08] ID_LIKE="rhel fedora"
[2026-01-09 22:20:08] VERSION_ID="7"
[2026-01-09 22:20:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:20:08] ANSI_COLOR="0;31"
[2026-01-09 22:20:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:20:08] HOME_URL="https://www.centos.org/"
[2026-01-09 22:20:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:20:08] 
[2026-01-09 22:20:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:20:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:20:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:20:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:20:08] 
[2026-01-09 22:20:08] 2026-01-09 21:19:13,322 | INFO     | ***************************************
[2026-01-09 22:20:08] 2026-01-09 21:19:13,825 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 22:20:08] 2026-01-09 21:19:13,838 | INFO     | sufficient remaining disk space (343846944768 B)
[2026-01-09 22:20:08] 2026-01-09 21:19:13,838 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | INFO     | update_server=False
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | INFO     | aborting loop
[2026-01-09 22:20:08] 2026-01-09 21:19:13,839 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:20:08] 2026-01-09 21:19:14,491 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:20:08] 2026-01-09 21:19:14,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:20:08] 2026-01-09 21:19:14,717 | INFO     | all job control threads have been joined
[2026-01-09 22:20:08] 2026-01-09 21:19:14,841 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:14,844 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:14,845 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:14,862 | INFO     | all data control threads have been joined
[2026-01-09 22:20:08] 2026-01-09 21:19:14,955 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:15,119 | INFO     | all payload control threads have been joined
[2026-01-09 22:20:08] 2026-01-09 21:19:15,179 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:15,445 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:15,450 | INFO     | [job] validate thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:15,561 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:15,722 | INFO     | [job] control thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:15,868 | INFO     | [data] control thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:16,043 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:16,124 | INFO     | [payload] control thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:16,154 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:16,497 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:18,528 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:19:24,804 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:20:08] 2026-01-09 21:19:25,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:20:08] 2026-01-09 21:20:02,977 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:20:08] 2026-01-09 21:20:03,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140255550818112)>', '<ExcThread(monitor, started 140255193700096)>']
[2026-01-09 22:20:08] 2026-01-09 21:20:04,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:20:08] 2026-01-09 21:20:04,099 | INFO     | [monitor] control thread has ended
[2026-01-09 22:20:08] 2026-01-09 21:20:08,569 | INFO     | all workflow threads have been joined
[2026-01-09 22:20:08] 2026-01-09 21:20:08,569 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:20:08] 2026-01-09 21:20:08,570 | INFO     | traces error code: 0
[2026-01-09 22:20:08] 2026-01-09 21:20:08,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:20:08] 2026-01-09 21:20:08,622 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:20:08] 2026-01-09 21:20:08,625 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:20:08] 2026-01-09 21:20:08,627 [wrapper] pilotpid: 65998
[2026-01-09 22:20:08] 2026-01-09 21:20:08,630 [wrapper] Pilot exit status: 0
[2026-01-09 22:20:08] 2026-01-09 21:20:08,637 [wrapper] pandaids: 6963167683
[2026-01-09 22:20:08] 2026-01-09 21:20:08,655 [wrapper] cleanup supervisor_pilot   87735 65999
[2026-01-09 22:20:08] 2026-01-09 21:20:08,657 [wrapper] Test setup, not cleaning
[2026-01-09 22:20:08] 2026-01-09 21:20:08,659 [wrapper] apfmon messages muted
[2026-01-09 22:20:08] 2026-01-09 21:20:08,662 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:20:08] 2026-01-09 21:20:08,664 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:20:08]  *** Error codes and diagnostics ***
[2026-01-09 22:20:08]     "exeErrorCode": 0,
[2026-01-09 22:20:08]     "exeErrorDiag": "",
[2026-01-09 22:20:08]     "pilotErrorCode": 0,
[2026-01-09 22:20:08]     "pilotErrorDiag": "",
[2026-01-09 22:20:08]  *** Listing of results directory ***
[2026-01-09 22:20:08] total 444720
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 22:20:08] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc       100 Jan  9 20:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:20:08] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 20:17 run_atlas
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc       105 Jan  9 20:17 job.xml
[2026-01-09 22:20:08] -rw-r--r-- 2 boinc boinc 223126381 Jan  9 20:17 EVNT.47898824._001336.pool.root.1
[2026-01-09 22:20:08] -rw-r--r-- 2 boinc boinc    592397 Jan  9 20:17 input.tar.gz
[2026-01-09 22:20:08] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:17 start_atlas.sh
[2026-01-09 22:20:08] drwxrwx--x 2 boinc boinc      4096 Jan  9 20:17 shared
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:17 boinc_setup_complete
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc      6439 Jan  9 20:17 init_data.xml
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:17 boinc_lockfile
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc      2517 Jan  9 20:17 pandaJob.out
[2026-01-09 22:20:08] -rw------- 1 boinc boinc    989364 Jan  9 20:17 agis_schedconf.cvmfs.json
[2026-01-09 22:20:08] -rw------- 1 boinc boinc   1516240 Jan  9 20:17 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:20:08] drwx------ 5 boinc boinc      4096 Jan  9 20:17 pilot3
[2026-01-09 22:20:08] -rw------- 1 boinc boinc        95 Jan  9 22:18 pilot_heartbeat.json
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc       529 Jan  9 22:18 boinc_task_state.xml
[2026-01-09 22:20:08] -rw------- 1 boinc boinc 225718086 Jan  9 22:18 HITS.47898826._035924.pool.root.1
[2026-01-09 22:20:08] -rw------- 1 boinc boinc      1022 Jan  9 22:19 memory_monitor_summary.json
[2026-01-09 22:20:08] -rw------- 1 boinc boinc    272098 Jan  9 22:19 log.47898826._035924.job.log.tgz.1
[2026-01-09 22:20:08] -rw------- 1 boinc boinc      7759 Jan  9 22:19 heartbeat.json
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc        27 Jan  9 22:19 wrapper_checkpoint.txt
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc      8192 Jan  9 22:19 boinc_mmap_file
[2026-01-09 22:20:08] -rw------- 1 boinc boinc      4628 Jan  9 22:20 pilotlog.txt
[2026-01-09 22:20:08] -rw------- 1 boinc boinc   1046370 Jan  9 22:20 log.47898826._035924.job.log.1
[2026-01-09 22:20:08] -rw------- 1 boinc boinc       357 Jan  9 22:20 output.list
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc       620 Jan  9 22:20 runtime_log
[2026-01-09 22:20:08] -rw------- 1 boinc boinc   1341440 Jan  9 22:20 result.tar.gz
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc      8897 Jan  9 22:20 runtime_log.err
[2026-01-09 22:20:08] -rw------- 1 boinc boinc       659 Jan  9 22:20 Np7MDmzzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHrlKDmiRSuSn.diag
[2026-01-09 22:20:08] -rw-r--r-- 1 boinc boinc     12998 Jan  9 22:20 stderr.txt
[2026-01-09 22:20:08] HITS file was successfully produced:
[2026-01-09 22:20:08] -rw------- 1 boinc boinc 225718086 Jan  9 22:18 shared/HITS.pool.root.1
[2026-01-09 22:20:08]  *** Contents of shared directory: ***
[2026-01-09 22:20:08] total 440244
[2026-01-09 22:20:08] -rw-r--r-- 2 boinc boinc 223126381 Jan  9 20:17 ATLAS.root_0
[2026-01-09 22:20:08] -rw-r--r-- 2 boinc boinc    592397 Jan  9 20:17 input.tar.gz
[2026-01-09 22:20:08] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:17 start_atlas.sh
[2026-01-09 22:20:08] -rw------- 1 boinc boinc 225718086 Jan  9 22:18 HITS.pool.root.1
[2026-01-09 22:20:08] -rw------- 1 boinc boinc   1341440 Jan  9 22:20 result.tar.gz
22:20:09 (62274): run_atlas exited; CPU time 21069.400133
22:20:09 (62274): called boinc_finish(0)

</stderr_txt>
]]>

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