Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:12:15 (2706): wrapper (7.7.26015): starting
01:12:15 (2706): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 01:12:15] Arguments: --nthreads 8
[2026-01-09 01:12:15] Threads: 8
[2026-01-09 01:12:15] Checking for CVMFS
[2026-01-09 01:12:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 01:12:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 01:12:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 01:12:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 01:12:15] 2.11.2.0 4697 180649 137860 154933 0 188 16409182 18432000 1833 130560 0 121317525 99.979 7051230 34185 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 01:12:15] CVMFS is ok
[2026-01-09 01:12:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 01:12:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 01:12:15] Further information can be found at the LHC@home message board.
[2026-01-09 01:12:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 01:12:15] Checking for apptainer binary...
[2026-01-09 01:12:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 01:12:15] Running /usr/bin/apptainer --version
[2026-01-09 01:12:15] apptainer version 1.3.2-1.el7
[2026-01-09 01:12:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 01:12:16] c-206-21.aglt2.org
[2026-01-09 01:12:16] apptainer works
[2026-01-09 01:12:16] Set ATHENA_PROC_NUMBER=8
[2026-01-09 01:12:16] Set ATHENA_CORE_NUMBER=8
[2026-01-09 01:12:16] Starting ATLAS job with PandaID=6963167513
[2026-01-09 01:12:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:12:09 (10380): wrapper (7.7.26015): starting
05:12:09 (10380): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 05:12:09] Arguments: --nthreads 8
[2026-01-09 05:12:09] Threads: 8
[2026-01-09 05:12:09] This job has been restarted, cleaning up previous attempt
[2026-01-09 05:12:09] Checking for CVMFS
[2026-01-09 05:12:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:12:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:12:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:12:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:12:09] 2.11.2.0 4697 180888 135404 154938 1 188 16432750 18432001 1 130560 0 121569055 99.979 7058019 34187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 05:12:09] CVMFS is ok
[2026-01-09 05:12:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 05:12:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 05:12:09] Further information can be found at the LHC@home message board.
[2026-01-09 05:12:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:12:09] Checking for apptainer binary...
[2026-01-09 05:12:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:12:09] Running /usr/bin/apptainer --version
[2026-01-09 05:12:09] apptainer version 1.3.2-1.el7
[2026-01-09 05:12:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:12:10] c-206-21.aglt2.org
[2026-01-09 05:12:10] apptainer works
[2026-01-09 05:12:10] Set ATHENA_PROC_NUMBER=8
[2026-01-09 05:12:10] Set ATHENA_CORE_NUMBER=8
[2026-01-09 05:12:10] Starting ATLAS job with PandaID=6963167513
[2026-01-09 05:12:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:42:59]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:42:59] 2026-01-09 14:42:27,014 | INFO     | chi2: 1.254819997196428
[2026-01-09 09:42:59] 2026-01-09 14:42:27,015 | INFO     | sum of square deviations: 5449944045.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,016 | INFO     | sum of deviations: 49207400852.5
[2026-01-09 09:42:59] 2026-01-09 14:42:27,017 | INFO     | mean x: 1767961469.5
[2026-01-09 09:42:59] 2026-01-09 14:42:27,017 | INFO     | mean y: 2474241.3423076924
[2026-01-09 09:42:59] 2026-01-09 14:42:27,017 | INFO     | intersect: -15960403175.954453
[2026-01-09 09:42:59] 2026-01-09 14:42:27,017 | INFO     | chi2: 1.2548514572167258
[2026-01-09 09:42:59] 2026-01-09 14:42:27,017 | INFO     | current chi2=1.2548514572167258 (change=-0.002507134120275095 %)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,017 | INFO     | right removable region: 259
[2026-01-09 09:42:59] 2026-01-09 14:42:27,018 | INFO     | sum of square deviations: 5449944045.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,019 | INFO     | sum of deviations: 14394350346.499998
[2026-01-09 09:42:59] 2026-01-09 14:42:27,019 | INFO     | mean x: 1767961774.5
[2026-01-09 09:42:59] 2026-01-09 14:42:27,020 | INFO     | mean y: 2491747.803846154
[2026-01-09 09:42:59] 2026-01-09 14:42:27,020 | INFO     | intersect: -4667035309.950162
[2026-01-09 09:42:59] 2026-01-09 14:42:27,020 | INFO     | chi2: 0.04774913789916883
[2026-01-09 09:42:59] 2026-01-09 14:42:27,020 | INFO     | current chi2=0.04774913789916883 (change=96.19474203424778 %)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,021 | INFO     | sum of square deviations: 5141528960.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,022 | INFO     | sum of deviations: 6508608256.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,022 | INFO     | mean x: 1767961927.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,022 | INFO     | mean y: 2495619.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,022 | INFO     | intersect: -2235549072.3530307
[2026-01-09 09:42:59] 2026-01-09 14:42:27,023 | INFO     | chi2: 0.0017377972288428868
[2026-01-09 09:42:59] 2026-01-09 14:42:27,023 | INFO     | current chi2=0.0017377972288428868 (change=96.36056836772097 %)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,023 | INFO     | sum of square deviations: 4844974562.5
[2026-01-09 09:42:59] 2026-01-09 14:42:27,025 | INFO     | sum of deviations: 4841276956.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,025 | INFO     | mean x: 1767962079.5
[2026-01-09 09:42:59] 2026-01-09 14:42:27,025 | INFO     | mean y: 2496475.512
[2026-01-09 09:42:59] 2026-01-09 14:42:27,025 | INFO     | intersect: -1764116323.8230407
[2026-01-09 09:42:59] 2026-01-09 14:42:27,025 | INFO     | chi2: 0.0007527774962196179
[2026-01-09 09:42:59] 2026-01-09 14:42:27,026 | INFO     | current chi2=0.0007527774962196179 (change=56.68208674030082 %)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,026 | INFO     | sum of square deviations: 4560048290.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,027 | INFO     | sum of deviations: 3737852043.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,028 | INFO     | mean x: 1767962232.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,028 | INFO     | mean y: 2497065.1102040815
[2026-01-09 09:42:59] 2026-01-09 14:42:27,028 | INFO     | intersect: -1446694000.5458221
[2026-01-09 09:42:59] 2026-01-09 14:42:27,028 | INFO     | chi2: 0.00033052423601964204
[2026-01-09 09:42:59] 2026-01-09 14:42:27,028 | INFO     | current chi2=0.00033052423601964204 (change=56.092704991912534 %)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,029 | INFO     | sum of square deviations: 4286517580.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,030 | INFO     | sum of deviations: 3256006150.0000005
[2026-01-09 09:42:59] 2026-01-09 14:42:27,030 | INFO     | mean x: 1767962384.5
[2026-01-09 09:42:59] 2026-01-09 14:42:27,030 | INFO     | mean y: 2497332.7416666667
[2026-01-09 09:42:59] 2026-01-09 14:42:27,030 | INFO     | intersect: -1340433447.1901088
[2026-01-09 09:42:59] 2026-01-09 14:42:27,031 | INFO     | chi2: 0.00027097929233903955
[2026-01-09 09:42:59] 2026-01-09 14:42:27,031 | INFO     | current chi2=0.00027097929233903955 (change=18.015303324705034 %)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,031 | INFO     | left removable region: 50
[2026-01-09 09:42:59] 2026-01-09 14:42:27,031 | INFO     | sum of square deviations: 2830787960.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,032 | INFO     | sum of deviations: 1914599618.9999967
[2026-01-09 09:42:59] 2026-01-09 14:42:27,032 | INFO     | mean x: 1767962964.0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,033 | INFO     | mean y: 2497913.966507177
[2026-01-09 09:42:59] 2026-01-09 14:42:27,033 | INFO     | intersect: -1193261452.369255
[2026-01-09 09:42:59] 2026-01-09 14:42:27,033 | INFO     | chi2: 0.0002537246469033085
[2026-01-09 09:42:59] 2026-01-09 14:42:27,033 | INFO     | current memory leak: 0.68 B/s (using 209 data points, chi2=0.00)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,033 | INFO     | could have reported an average CPU frequency of 2348 MHz (12 samples)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | ..............................
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . Timing measurements:
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . get job = 0 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . initial setup = 2 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . payload setup = 5 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . stage-in = 0 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . payload execution = 16168 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . stage-out = 1 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,034 | INFO     | . log creation = 0 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,035 | INFO     | ..............................
[2026-01-09 09:42:59] 2026-01-09 14:42:27,114 | INFO     | 
[2026-01-09 09:42:59] 2026-01-09 14:42:27,114 | INFO     | job summary report
[2026-01-09 09:42:59] 2026-01-09 14:42:27,115 | INFO     | --------------------------------------------------
[2026-01-09 09:42:59] 2026-01-09 14:42:27,115 | INFO     | PanDA job id: 6963167513
[2026-01-09 09:42:59] 2026-01-09 14:42:27,115 | INFO     | task id: 47898826
[2026-01-09 09:42:59] 2026-01-09 14:42:27,115 | INFO     | errors: (none)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,115 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:42:59] 2026-01-09 14:42:27,115 | INFO     | pilot state: finished 
[2026-01-09 09:42:59] 2026-01-09 14:42:27,116 | INFO     | transexitcode: 0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,116 | INFO     | exeerrorcode: 0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,116 | INFO     | exeerrordiag: 
[2026-01-09 09:42:59] 2026-01-09 14:42:27,116 | INFO     | exitcode: 0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,116 | INFO     | exitmsg: OK
[2026-01-09 09:42:59] 2026-01-09 14:42:27,116 | INFO     | cpuconsumptiontime: 123664 s
[2026-01-09 09:42:59] 2026-01-09 14:42:27,116 | INFO     | nevents: 400
[2026-01-09 09:42:59] 2026-01-09 14:42:27,117 | INFO     | neventsw: 0
[2026-01-09 09:42:59] 2026-01-09 14:42:27,117 | INFO     | pid: 10933
[2026-01-09 09:42:59] 2026-01-09 14:42:27,117 | INFO     | pgrp: 10933
[2026-01-09 09:42:59] 2026-01-09 14:42:27,117 | INFO     | corecount: 8
[2026-01-09 09:42:59] 2026-01-09 14:42:27,117 | INFO     | event service: False
[2026-01-09 09:42:59] 2026-01-09 14:42:27,117 | INFO     | sizes: {0: 2283800, 1: 2283999, 5: 2284261, 11: 2284317, 16178: 2315694, 16180: 2324692, 16183: 2324876, 16187: 2325070}
[2026-01-09 09:42:59] 2026-01-09 14:42:27,118 | INFO     | --------------------------------------------------
[2026-01-09 09:42:59] 2026-01-09 14:42:27,118 | INFO     | 
[2026-01-09 09:42:59] 2026-01-09 14:42:27,118 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 09:42:59] 2026-01-09 14:42:27,140 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,141 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,141 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,141 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,141 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,141 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,141 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,142 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,142 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,142 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,142 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,142 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,143 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,143 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,143 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,143 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,143 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,143 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,143 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:42:59] 2026-01-09 14:42:27,144 | INFO     | job 6963167513 has completed (purged errors)
[2026-01-09 09:42:59] 2026-01-09 14:42:27,144 | INFO     | overall cleanup function is called
[2026-01-09 09:42:59] 2026-01-09 14:42:28,149 | INFO     | --- collectZombieJob: --- 10, [10933]
[2026-01-09 09:42:59] 2026-01-09 14:42:28,150 | INFO     | zombie collector waiting for pid 10933
[2026-01-09 09:42:59] 2026-01-09 14:42:28,150 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:42:59] 2026-01-09 14:42:28,150 | INFO     | collected zombie processes
[2026-01-09 09:42:59] 2026-01-09 14:42:28,150 | INFO     | will attempt to kill all subprocesses of pid=10933
[2026-01-09 09:42:59] 2026-01-09 14:42:28,266 | INFO     | process IDs to be killed: [10933] (in reverse order)
[2026-01-09 09:42:59] 2026-01-09 14:42:28,318 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:42:59] 2026-01-09 14:42:28,318 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:42:59] 2026-01-09 14:42:28,321 | INFO     | did not find any defunct processes belonging to 10933
[2026-01-09 09:42:59] 2026-01-09 14:42:28,324 | INFO     | did not find any defunct processes belonging to 10933
[2026-01-09 09:42:59] 2026-01-09 14:42:28,324 | INFO     | ready for new job
[2026-01-09 09:42:59] 2026-01-09 14:42:28,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:42:59] 2026-01-09 14:42:28,326 | INFO     | ***************************************
[2026-01-09 09:42:59] 2026-01-09 14:42:28,326 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:42:59] 2026-01-09 14:42:28,326 | INFO     | ***************************************
[2026-01-09 09:42:59] 2026-01-09 14:42:28,326 | INFO     | 
[2026-01-09 09:42:59] 2026-01-09 14:42:28,327 | INFO     | architecture information:
[2026-01-09 09:42:59] 2026-01-09 14:42:28,327 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:42:59] 2026-01-09 14:42:28,341 | INFO     | cat /etc/os-release:
[2026-01-09 09:42:59] NAME="CentOS Linux"
[2026-01-09 09:42:59] VERSION="7 (Core)"
[2026-01-09 09:42:59] ID="centos"
[2026-01-09 09:42:59] ID_LIKE="rhel fedora"
[2026-01-09 09:42:59] VERSION_ID="7"
[2026-01-09 09:42:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:42:59] ANSI_COLOR="0;31"
[2026-01-09 09:42:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:42:59] HOME_URL="https://www.centos.org/"
[2026-01-09 09:42:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:42:59] 
[2026-01-09 09:42:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:42:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:42:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:42:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:42:59] 
[2026-01-09 09:42:59] 2026-01-09 14:42:28,342 | INFO     | ***************************************
[2026-01-09 09:42:59] 2026-01-09 14:42:28,845 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 09:42:59] 2026-01-09 14:42:28,860 | INFO     | sufficient remaining disk space (27632074752 B)
[2026-01-09 09:42:59] 2026-01-09 14:42:28,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:42:59] 2026-01-09 14:42:28,860 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:42:59] 2026-01-09 14:42:28,860 | INFO     | update_server=False
[2026-01-09 09:42:59] 2026-01-09 14:42:28,860 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:42:59] 2026-01-09 14:42:28,861 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:42:59] 2026-01-09 14:42:28,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:42:59] 2026-01-09 14:42:28,888 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 09:42:59] 2026-01-09 14:42:28,888 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 09:42:59] 2026-01-09 14:42:28,896 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:42:59] 2026-01-09 14:42:28,897 | INFO     | will abort loop
[2026-01-09 09:42:59] 2026-01-09 14:42:29,673 | INFO     | all data control threads have been joined
[2026-01-09 09:42:59] 2026-01-09 14:42:29,866 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:29,866 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:29,902 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:29,915 | INFO     | all payload control threads have been joined
[2026-01-09 09:42:59] 2026-01-09 14:42:29,923 | INFO     | all job control threads have been joined
[2026-01-09 09:42:59] 2026-01-09 14:42:30,082 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,144 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,145 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,164 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,173 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,180 | INFO     | [job] validate thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:42:59] 2026-01-09 14:42:30,454 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,678 | INFO     | [data] control thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,819 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,921 | INFO     | [payload] control thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:30,928 | INFO     | [job] control thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:32,349 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:32,867 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:42:59] 2026-01-09 14:42:50,572 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:42:59] 2026-01-09 14:42:51,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139692812982080)>', '<ExcThread(monitor, started 139692368443136)>']
[2026-01-09 09:42:59] 2026-01-09 14:42:56,879 | INFO     | all workflow threads have been joined
[2026-01-09 09:42:59] 2026-01-09 14:42:56,879 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:42:59] 2026-01-09 14:42:56,887 | INFO     | traces error code: 0
[2026-01-09 09:42:59] 2026-01-09 14:42:56,887 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:42:59] 2026-01-09 14:42:58,758 | INFO     | PID=21475 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 09:42:59] 2026-01-09 14:42:58,758 | INFO     | .. there are 2 such processes running
[2026-01-09 09:42:59] 2026-01-09 14:42:58,759 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:42:59] 2026-01-09 14:42:58,759 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:42:59] 2026-01-09 14:42:58,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:42:59] 2026-01-09 14:42:58,759 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:42:59] 2026-01-09 14:42:58,759 | INFO     | [monitor] control thread has ended
[2026-01-09 09:42:59] 2026-01-09 14:42:58,847 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:42:59] 2026-01-09 14:42:58,851 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:42:59] 2026-01-09 14:42:58,854 [wrapper] pilotpid: 21475
[2026-01-09 09:42:59] 2026-01-09 14:42:58,858 [wrapper] Pilot exit status: 0
[2026-01-09 09:42:59] 2026-01-09 14:42:58,869 [wrapper] pandaids: 6963167513 6963167513
[2026-01-09 09:42:59] 2026-01-09 14:42:58,910 [wrapper] cleanup supervisor_pilot 11599 21477
[2026-01-09 09:42:59] 2026-01-09 14:42:58,914 [wrapper] Test setup, not cleaning
[2026-01-09 09:42:59] 2026-01-09 14:42:58,917 [wrapper] apfmon messages muted
[2026-01-09 09:42:59] 2026-01-09 14:42:58,921 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:42:59] 2026-01-09 14:42:58,925 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:42:59]  *** Error codes and diagnostics ***
[2026-01-09 09:42:59]     "exeErrorCode": 0,
[2026-01-09 09:42:59]     "exeErrorDiag": "",
[2026-01-09 09:42:59]     "pilotErrorCode": 0,
[2026-01-09 09:42:59]     "pilotErrorDiag": "",
[2026-01-09 09:42:59]  *** Listing of results directory ***
[2026-01-09 09:42:59] total 667700
[2026-01-09 09:42:59] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 09:42:59] -rwx------ 1 boincer umatlas     36322 Jan  8 19:57 runpilot2-wrapper.sh
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:57 queuedata.json
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas       100 Jan  9 01:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:42:59] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 01:12 run_atlas
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas       105 Jan  9 01:12 job.xml
[2026-01-09 09:42:59] -rw-r--r-- 3 boincer umatlas 225409879 Jan  9 01:12 EVNT.47898824._001327.pool.root.1
[2026-01-09 09:42:59] -rw-r--r-- 3 boincer umatlas 225409879 Jan  9 01:12 ATLAS.root_0
[2026-01-09 09:42:59] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 01:12 start_atlas.sh
[2026-01-09 09:42:59] drwxrwx--x 2 boincer umatlas      4096 Jan  9 01:12 shared
[2026-01-09 09:42:59] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 01:12 input.tar.gz
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas         0 Jan  9 01:12 boinc_lockfile
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 05:12 pandaJob.out
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas        57 Jan  9 05:12 setup.sh.local
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas    989751 Jan  9 05:12 agis_schedconf.cvmfs.json
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas      5953 Jan  9 09:39 init_data.xml
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas 223534449 Jan  9 09:41 HITS.47898826._035754.pool.root.1
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas       532 Jan  9 09:42 boinc_task_state.xml
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas      1046 Jan  9 09:42 memory_monitor_summary.json
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas   1516240 Jan  9 09:42 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas    480698 Jan  9 09:42 log.47898826._035754.job.log.tgz.1
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas      7850 Jan  9 09:42 heartbeat.json
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 09:42 boinc_mmap_file
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas        29 Jan  9 09:42 wrapper_checkpoint.txt
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas       820 Jan  9 09:42 pilotlog.txt
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas        96 Jan  9 09:42 pilot_heartbeat.json
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas   2246199 Jan  9 09:42 log.47898826._035754.job.log.1
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas       357 Jan  9 09:42 output.list
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas       620 Jan  9 09:42 runtime_log
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas   2744320 Jan  9 09:42 result.tar.gz
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas      9428 Jan  9 09:42 runtime_log.err
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas       787 Jan  9 09:42 AMdKDmpzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwagKDmHUrGYn.diag
[2026-01-09 09:42:59] -rw-r--r-- 1 boincer umatlas     23105 Jan  9 09:42 stderr.txt
[2026-01-09 09:42:59] HITS file was successfully produced:
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas 223534449 Jan  9 09:41 shared/HITS.pool.root.1
[2026-01-09 09:42:59]  *** Contents of shared directory: ***
[2026-01-09 09:42:59] total 441708
[2026-01-09 09:42:59] -rw-r--r-- 3 boincer umatlas 225409879 Jan  9 01:12 ATLAS.root_0
[2026-01-09 09:42:59] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 01:12 start_atlas.sh
[2026-01-09 09:42:59] -rw-r--r-- 2 boincer umatlas    592399 Jan  9 01:12 input.tar.gz
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas 223534449 Jan  9 09:41 HITS.pool.root.1
[2026-01-09 09:42:59] -rw------- 1 boincer umatlas   2744320 Jan  9 09:42 result.tar.gz
09:43:00 (10380): run_atlas exited; CPU time 123878.158625
09:43:00 (10380): called boinc_finish(0)

</stderr_txt>
]]>

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