Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:24:01 (3475855): wrapper (7.7.26015): starting
19:24:01 (3475855): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 19:24:01] Arguments: --nthreads 3
[2026-01-09 19:24:01] Threads: 3
[2026-01-09 19:24:01] Checking for CVMFS
[2026-01-09 19:24:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:24:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:24:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:24:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:24:01] 2.9.2.0 2973026 2027 86216 154952 1 56 22032427 36864000 0 130560 0 1307845 99.989 76784 4832 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 19:24:01] CVMFS is ok
[2026-01-09 19:24:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:24:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:24:01] Further information can be found at the LHC@home message board.
[2026-01-09 19:24:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:24:01] Checking for apptainer binary...
[2026-01-09 19:24:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:24:01] Running /usr/bin/apptainer --version
[2026-01-09 19:24:01] apptainer version 1.4.1-1.1
[2026-01-09 19:24:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:24:01] atlasA228b
[2026-01-09 19:24:01] apptainer works
[2026-01-09 19:24:01] Set ATHENA_PROC_NUMBER=3
[2026-01-09 19:24:01] Set ATHENA_CORE_NUMBER=3
[2026-01-09 19:24:01] Starting ATLAS job with PandaID=6963167224
[2026-01-09 19:24:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:19:20]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:19:20] 2026-01-09 20:18:43,506 | INFO     | cat /etc/os-release:
[2026-01-09 21:19:20] NAME="CentOS Linux"
[2026-01-09 21:19:20] VERSION="7 (Core)"
[2026-01-09 21:19:20] ID="centos"
[2026-01-09 21:19:20] ID_LIKE="rhel fedora"
[2026-01-09 21:19:20] VERSION_ID="7"
[2026-01-09 21:19:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:19:20] ANSI_COLOR="0;31"
[2026-01-09 21:19:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:19:20] HOME_URL="https://www.centos.org/"
[2026-01-09 21:19:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:19:20] 
[2026-01-09 21:19:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:19:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:19:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:19:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:19:20] 
[2026-01-09 21:19:20] 2026-01-09 20:18:43,506 | INFO     | ***************************************
[2026-01-09 21:19:20] 2026-01-09 20:18:44,009 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 21:19:20] 2026-01-09 20:18:44,020 | INFO     | sufficient remaining disk space (282416119808 B)
[2026-01-09 21:19:20] 2026-01-09 20:18:44,020 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:19:20] 2026-01-09 20:18:44,020 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:19:20] 2026-01-09 20:18:44,020 | INFO     | update_server=False
[2026-01-09 21:19:20] 2026-01-09 20:18:44,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:19:20] 2026-01-09 20:18:44,020 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:19:20] 2026-01-09 20:18:44,082 | INFO     | all payload control threads have been joined
[2026-01-09 21:19:20] 2026-01-09 20:18:44,236 | INFO     | all job control threads have been joined
[2026-01-09 21:19:20] 2026-01-09 20:18:44,622 | INFO     | all data control threads have been joined
[2026-01-09 21:19:20] 2026-01-09 20:18:44,706 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:19:20] 2026-01-09 20:18:44,706 | INFO     | aborting loop
[2026-01-09 21:19:20] 2026-01-09 20:18:45,025 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,025 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,087 | INFO     | [payload] control thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,181 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,241 | INFO     | [job] control thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,404 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:19:20] 2026-01-09 20:18:45,564 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,627 | INFO     | [data] control thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,711 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:45,911 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:46,054 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:46,126 | INFO     | [job] validate thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:46,238 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:46,245 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:47,131 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:19:20] 2026-01-09 20:18:47,409 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:51,138 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:18:54,404 | INFO     | job.realtimelogging is not enabled
[2026-01-09 21:19:20] 2026-01-09 20:18:55,410 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:19:20] 2026-01-09 20:19:13,459 | INFO     | 6876s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 21:19:20] 2026-01-09 20:19:14,161 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:19:20] 2026-01-09 20:19:14,524 | INFO     | PID=3479582 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 21:19:20] 2026-01-09 20:19:14,524 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:19:20] 2026-01-09 20:19:14,524 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:19:20] 2026-01-09 20:19:14,524 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:19:20] 2026-01-09 20:19:15,486 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140689931757376)>', '<ExcThread(monitor, started 140689144792832)>']
[2026-01-09 21:19:20] 2026-01-09 20:19:15,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:19:20] 2026-01-09 20:19:15,530 | INFO     | [monitor] control thread has ended
[2026-01-09 21:19:20] 2026-01-09 20:19:20,490 | INFO     | all workflow threads have been joined
[2026-01-09 21:19:20] 2026-01-09 20:19:20,490 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:19:20] 2026-01-09 20:19:20,490 | INFO     | traces error code: 0
[2026-01-09 21:19:20] 2026-01-09 20:19:20,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:19:20] 2026-01-09 20:19:20,542 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:19:20] 2026-01-09 20:19:20,545 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:19:20] 2026-01-09 20:19:20,548 [wrapper] pilotpid: 3479582
[2026-01-09 21:19:20] 2026-01-09 20:19:20,550 [wrapper] Pilot exit status: 0
[2026-01-09 21:19:20] 2026-01-09 20:19:20,558 [wrapper] pandaids: 6963167224
[2026-01-09 21:19:20] 2026-01-09 20:19:20,576 [wrapper] cleanup supervisor_pilot 3500452 3479583
[2026-01-09 21:19:20] 2026-01-09 20:19:20,579 [wrapper] Test setup, not cleaning
[2026-01-09 21:19:20] 2026-01-09 20:19:20,581 [wrapper] apfmon messages muted
[2026-01-09 21:19:20] 2026-01-09 20:19:20,584 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:19:20] 2026-01-09 20:19:20,587 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:19:20]  *** Error codes and diagnostics ***
[2026-01-09 21:19:20]     "exeErrorCode": 0,
[2026-01-09 21:19:20]     "exeErrorDiag": "",
[2026-01-09 21:19:20]     "pilotErrorCode": 0,
[2026-01-09 21:19:20]     "pilotErrorDiag": "",
[2026-01-09 21:19:20]  *** Listing of results directory ***
[2026-01-09 21:19:20] total 437184
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 21:19:20] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc       100 Jan  9 19:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:19:20] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 19:24 run_atlas
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc       105 Jan  9 19:24 job.xml
[2026-01-09 21:19:20] -rw-r--r-- 2 boinc boinc 221166043 Jan  9 19:24 EVNT.47898824._001380.pool.root.1
[2026-01-09 21:19:20] drwxrwx--x 2 boinc boinc      4096 Jan  9 19:24 shared
[2026-01-09 21:19:20] -rw-r--r-- 2 boinc boinc    592399 Jan  9 19:24 input.tar.gz
[2026-01-09 21:19:20] -rw-r--r-- 2 boinc boinc     15847 Jan  9 19:24 start_atlas.sh
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc         0 Jan  9 19:24 boinc_setup_complete
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc      6449 Jan  9 19:24 init_data.xml
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc         0 Jan  9 19:24 boinc_lockfile
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc      2517 Jan  9 19:24 pandaJob.out
[2026-01-09 21:19:20] -rw------- 1 boinc boinc    989372 Jan  9 19:24 agis_schedconf.cvmfs.json
[2026-01-09 21:19:20] -rw------- 1 boinc boinc   1516240 Jan  9 19:24 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:19:20] drwx------ 5 boinc boinc      4096 Jan  9 19:24 pilot3
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc       529 Jan  9 21:18 boinc_task_state.xml
[2026-01-09 21:19:20] -rw------- 1 boinc boinc 220087908 Jan  9 21:18 HITS.47898826._035599.pool.root.1
[2026-01-09 21:19:20] -rw------- 1 boinc boinc      1013 Jan  9 21:18 memory_monitor_summary.json
[2026-01-09 21:19:20] -rw------- 1 boinc boinc    265531 Jan  9 21:18 log.47898826._035599.job.log.tgz.1
[2026-01-09 21:19:20] -rw------- 1 boinc boinc      7748 Jan  9 21:18 heartbeat.json
[2026-01-09 21:19:20] -rw------- 1 boinc boinc        95 Jan  9 21:18 pilot_heartbeat.json
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc        27 Jan  9 21:19 wrapper_checkpoint.txt
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc      8192 Jan  9 21:19 boinc_mmap_file
[2026-01-09 21:19:20] -rw------- 1 boinc boinc      4939 Jan  9 21:19 pilotlog.txt
[2026-01-09 21:19:20] -rw------- 1 boinc boinc    992392 Jan  9 21:19 log.47898826._035599.job.log.1
[2026-01-09 21:19:20] -rw------- 1 boinc boinc       357 Jan  9 21:19 output.list
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc       620 Jan  9 21:19 runtime_log
[2026-01-09 21:19:20] -rw------- 1 boinc boinc   1280000 Jan  9 21:19 result.tar.gz
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc      8917 Jan  9 21:19 runtime_log.err
[2026-01-09 21:19:20] -rw------- 1 boinc boinc       663 Jan  9 21:19 8izMDmdzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeagKDmqpT44n.diag
[2026-01-09 21:19:20] -rw-r--r-- 1 boinc boinc      9021 Jan  9 21:19 stderr.txt
[2026-01-09 21:19:20] HITS file was successfully produced:
[2026-01-09 21:19:20] -rw------- 1 boinc boinc 220087908 Jan  9 21:18 shared/HITS.pool.root.1
[2026-01-09 21:19:20]  *** Contents of shared directory: ***
[2026-01-09 21:19:20] total 432772
[2026-01-09 21:19:20] -rw-r--r-- 2 boinc boinc 221166043 Jan  9 19:24 ATLAS.root_0
[2026-01-09 21:19:20] -rw-r--r-- 2 boinc boinc    592399 Jan  9 19:24 input.tar.gz
[2026-01-09 21:19:20] -rw-r--r-- 2 boinc boinc     15847 Jan  9 19:24 start_atlas.sh
[2026-01-09 21:19:20] -rw------- 1 boinc boinc 220087908 Jan  9 21:18 HITS.pool.root.1
[2026-01-09 21:19:20] -rw------- 1 boinc boinc   1280000 Jan  9 21:19 result.tar.gz
21:19:22 (3475855): run_atlas exited; CPU time 19903.260382
21:19:22 (3475855): called boinc_finish(0)

</stderr_txt>
]]>

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