Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:09:59 (1348977): wrapper (7.7.26015): starting
13:09:59 (1348977): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 13:09:59] Arguments: --nthreads 4
[2026-01-09 13:09:59] Threads: 4
[2026-01-09 13:09:59] Checking for CVMFS
[2026-01-09 13:10:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:10:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:10:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:10:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:10:00] 2.9.2.0 569242 2653 92892 154942 0 57 21038438 36864000 0 130560 0 2056253 99.990 99105 5424 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 13:10:00] CVMFS is ok
[2026-01-09 13:10:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:10:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:10:00] Further information can be found at the LHC@home message board.
[2026-01-09 13:10:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:10:00] Checking for apptainer binary...
[2026-01-09 13:10:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:10:00] Running /usr/bin/apptainer --version
[2026-01-09 13:10:00] apptainer version 1.4.1-1.1
[2026-01-09 13:10:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:10:00] thA369a
[2026-01-09 13:10:00] apptainer works
[2026-01-09 13:10:00] Set ATHENA_PROC_NUMBER=4
[2026-01-09 13:10:00] Set ATHENA_CORE_NUMBER=4
[2026-01-09 13:10:00] Starting ATLAS job with PandaID=6963167183
[2026-01-09 13:10:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:34:16]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:34:16] 2026-01-09 13:33:39,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,446 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:34:16] 2026-01-09 13:33:39,446 | INFO     | job 6963167183 has completed (purged errors)
[2026-01-09 14:34:16] 2026-01-09 13:33:39,446 | INFO     | overall cleanup function is called
[2026-01-09 14:34:16] 2026-01-09 13:33:40,452 | INFO     | --- collectZombieJob: --- 10, [1359305]
[2026-01-09 14:34:16] 2026-01-09 13:33:40,452 | INFO     | zombie collector waiting for pid 1359305
[2026-01-09 14:34:16] 2026-01-09 13:33:40,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:34:16] 2026-01-09 13:33:40,453 | INFO     | collected zombie processes
[2026-01-09 14:34:16] 2026-01-09 13:33:40,453 | INFO     | will attempt to kill all subprocesses of pid=1359305
[2026-01-09 14:34:16] 2026-01-09 13:33:40,497 | INFO     | process IDs to be killed: [1359305] (in reverse order)
[2026-01-09 14:34:16] 2026-01-09 13:33:40,523 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:34:16] 2026-01-09 13:33:40,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:34:16] 2026-01-09 13:33:40,524 | INFO     | did not find any defunct processes belonging to 1359305
[2026-01-09 14:34:16] 2026-01-09 13:33:40,525 | INFO     | did not find any defunct processes belonging to 1359305
[2026-01-09 14:34:16] 2026-01-09 13:33:40,525 | INFO     | ready for new job
[2026-01-09 14:34:16] 2026-01-09 13:33:40,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:34:16] 2026-01-09 13:33:40,526 | INFO     | ***************************************
[2026-01-09 14:34:16] 2026-01-09 13:33:40,526 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:34:16] 2026-01-09 13:33:40,526 | INFO     | ***************************************
[2026-01-09 14:34:16] 2026-01-09 13:33:40,526 | INFO     | 
[2026-01-09 14:34:16] 2026-01-09 13:33:40,527 | INFO     | architecture information:
[2026-01-09 14:34:16] 2026-01-09 13:33:40,527 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:34:16] 2026-01-09 13:33:40,536 | INFO     | cat /etc/os-release:
[2026-01-09 14:34:16] NAME="CentOS Linux"
[2026-01-09 14:34:16] VERSION="7 (Core)"
[2026-01-09 14:34:16] ID="centos"
[2026-01-09 14:34:16] ID_LIKE="rhel fedora"
[2026-01-09 14:34:16] VERSION_ID="7"
[2026-01-09 14:34:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:34:16] ANSI_COLOR="0;31"
[2026-01-09 14:34:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:34:16] HOME_URL="https://www.centos.org/"
[2026-01-09 14:34:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:34:16] 
[2026-01-09 14:34:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:34:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:34:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:34:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:34:16] 
[2026-01-09 14:34:16] 2026-01-09 13:33:40,536 | INFO     | ***************************************
[2026-01-09 14:34:16] 2026-01-09 13:33:41,039 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 14:34:16] 2026-01-09 13:33:41,051 | INFO     | sufficient remaining disk space (239041773568 B)
[2026-01-09 14:34:16] 2026-01-09 13:33:41,051 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:34:16] 2026-01-09 13:33:41,051 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:34:16] 2026-01-09 13:33:41,051 | INFO     | update_server=False
[2026-01-09 14:34:16] 2026-01-09 13:33:41,051 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:34:16] 2026-01-09 13:33:41,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:34:16] 2026-01-09 13:33:41,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:34:16] 2026-01-09 13:33:41,068 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 14:34:16] 2026-01-09 13:33:41,068 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 14:34:16] 2026-01-09 13:33:41,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:34:16] 2026-01-09 13:33:41,068 | INFO     | will abort loop
[2026-01-09 14:34:16] 2026-01-09 13:33:41,078 | INFO     | all payload control threads have been joined
[2026-01-09 14:34:16] 2026-01-09 13:33:41,238 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:34:16] 2026-01-09 13:33:41,713 | INFO     | all data control threads have been joined
[2026-01-09 14:34:16] 2026-01-09 13:33:41,833 | INFO     | all job control threads have been joined
[2026-01-09 14:34:16] 2026-01-09 13:33:42,057 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,057 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,074 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,083 | INFO     | [payload] control thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,207 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,228 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,642 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,718 | INFO     | [data] control thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,741 | INFO     | [job] validate thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,824 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,839 | INFO     | [job] control thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:42,942 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:43,058 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:43,079 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:43,231 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:33:45,245 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:34:16] 2026-01-09 13:34:10,886 | INFO     | PID=1352757 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:34:16] 2026-01-09 13:34:10,886 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:34:16] 2026-01-09 13:34:10,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:34:16] 2026-01-09 13:34:10,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:34:16] 2026-01-09 13:34:10,986 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:34:16] 2026-01-09 13:34:11,428 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980133246784)>', '<ExcThread(monitor, started 139979778922240)>']
[2026-01-09 14:34:16] 2026-01-09 13:34:11,892 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:34:16] 2026-01-09 13:34:11,892 | INFO     | [monitor] control thread has ended
[2026-01-09 14:34:16] 2026-01-09 13:34:16,445 | INFO     | all workflow threads have been joined
[2026-01-09 14:34:16] 2026-01-09 13:34:16,445 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:34:16] 2026-01-09 13:34:16,445 | INFO     | traces error code: 0
[2026-01-09 14:34:16] 2026-01-09 13:34:16,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:34:16] 2026-01-09 13:34:16,498 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:34:16] 2026-01-09 13:34:16,501 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:34:16] 2026-01-09 13:34:16,504 [wrapper] pilotpid: 1352757
[2026-01-09 14:34:16] 2026-01-09 13:34:16,506 [wrapper] Pilot exit status: 0
[2026-01-09 14:34:16] 2026-01-09 13:34:16,513 [wrapper] pandaids: 6963167183
[2026-01-09 14:34:16] 2026-01-09 13:34:16,530 [wrapper] cleanup supervisor_pilot 1371170 1352758
[2026-01-09 14:34:16] 2026-01-09 13:34:16,532 [wrapper] Test setup, not cleaning
[2026-01-09 14:34:16] 2026-01-09 13:34:16,535 [wrapper] apfmon messages muted
[2026-01-09 14:34:16] 2026-01-09 13:34:16,537 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:34:16] 2026-01-09 13:34:16,539 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:34:16]  *** Error codes and diagnostics ***
[2026-01-09 14:34:16]     "exeErrorCode": 0,
[2026-01-09 14:34:16]     "exeErrorDiag": "",
[2026-01-09 14:34:16]     "pilotErrorCode": 0,
[2026-01-09 14:34:16]     "pilotErrorDiag": "",
[2026-01-09 14:34:16]  *** Listing of results directory ***
[2026-01-09 14:34:16] total 433860
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 14:34:16] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc       100 Jan  9 13:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:34:16] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 13:09 run_atlas
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc       105 Jan  9 13:09 job.xml
[2026-01-09 14:34:16] -rw-r--r-- 2 boinc boinc 222919912 Jan  9 13:09 EVNT.47898824._001378.pool.root.1
[2026-01-09 14:34:16] -rw-r--r-- 2 boinc boinc    592396 Jan  9 13:09 input.tar.gz
[2026-01-09 14:34:16] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:09 start_atlas.sh
[2026-01-09 14:34:16] drwxrwx--x 2 boinc boinc      4096 Jan  9 13:09 shared
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:09 boinc_setup_complete
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc      6443 Jan  9 13:09 init_data.xml
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:09 boinc_lockfile
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc      2520 Jan  9 13:10 pandaJob.out
[2026-01-09 14:34:16] -rw------- 1 boinc boinc    989377 Jan  9 13:10 agis_schedconf.cvmfs.json
[2026-01-09 14:34:16] -rw------- 1 boinc boinc   1516240 Jan  9 13:10 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:34:16] drwx------ 5 boinc boinc      4096 Jan  9 13:10 pilot3
[2026-01-09 14:34:16] -rw------- 1 boinc boinc 215443040 Jan  9 14:33 HITS.47898826._035558.pool.root.1
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc       529 Jan  9 14:33 boinc_task_state.xml
[2026-01-09 14:34:16] -rw------- 1 boinc boinc      1012 Jan  9 14:33 memory_monitor_summary.json
[2026-01-09 14:34:16] -rw------- 1 boinc boinc        95 Jan  9 14:33 pilot_heartbeat.json
[2026-01-09 14:34:16] -rw------- 1 boinc boinc    265666 Jan  9 14:33 log.47898826._035558.job.log.tgz.1
[2026-01-09 14:34:16] -rw------- 1 boinc boinc      7745 Jan  9 14:33 heartbeat.json
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc      8192 Jan  9 14:33 boinc_mmap_file
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc        27 Jan  9 14:33 wrapper_checkpoint.txt
[2026-01-09 14:34:16] -rw------- 1 boinc boinc      4938 Jan  9 14:34 pilotlog.txt
[2026-01-09 14:34:16] -rw------- 1 boinc boinc    735786 Jan  9 14:34 log.47898826._035558.job.log.1
[2026-01-09 14:34:16] -rw------- 1 boinc boinc       357 Jan  9 14:34 output.list
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc       620 Jan  9 14:34 runtime_log
[2026-01-09 14:34:16] -rw------- 1 boinc boinc   1024000 Jan  9 14:34 result.tar.gz
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc      8902 Jan  9 14:34 runtime_log.err
[2026-01-09 14:34:16] -rw------- 1 boinc boinc       659 Jan  9 14:34 MXEMDmdzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8ZgKDmvC4nsm.diag
[2026-01-09 14:34:16] -rw-r--r-- 1 boinc boinc     12681 Jan  9 14:34 stderr.txt
[2026-01-09 14:34:16] HITS file was successfully produced:
[2026-01-09 14:34:16] -rw------- 1 boinc boinc 215443040 Jan  9 14:33 shared/HITS.pool.root.1
[2026-01-09 14:34:16]  *** Contents of shared directory: ***
[2026-01-09 14:34:16] total 429696
[2026-01-09 14:34:16] -rw-r--r-- 2 boinc boinc 222919912 Jan  9 13:09 ATLAS.root_0
[2026-01-09 14:34:16] -rw-r--r-- 2 boinc boinc    592396 Jan  9 13:09 input.tar.gz
[2026-01-09 14:34:16] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:09 start_atlas.sh
[2026-01-09 14:34:16] -rw------- 1 boinc boinc 215443040 Jan  9 14:33 HITS.pool.root.1
[2026-01-09 14:34:16] -rw------- 1 boinc boinc   1024000 Jan  9 14:34 result.tar.gz
14:34:18 (1348977): run_atlas exited; CPU time 19094.627334
14:34:18 (1348977): called boinc_finish(0)

</stderr_txt>
]]>

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