Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:40:53 (2872859): wrapper (7.7.26015): starting
21:40:53 (2872859): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 21:40:53] Arguments: --nthreads 4
[2026-01-09 21:40:53] Threads: 4
[2026-01-09 21:40:53] Checking for CVMFS
[2026-01-09 21:40:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 21:40:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 21:40:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 21:40:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 21:40:53] 2.9.2.0 2024436 3134 93684 154956 2 57 25893864 36864001 0 130560 0 2190119 99.989 115505 5887 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 21:40:53] CVMFS is ok
[2026-01-09 21:40:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 21:40:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 21:40:53] Further information can be found at the LHC@home message board.
[2026-01-09 21:40:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 21:40:53] Checking for apptainer binary...
[2026-01-09 21:40:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 21:40:53] Running /usr/bin/apptainer --version
[2026-01-09 21:40:53] apptainer version 1.4.1-1.1
[2026-01-09 21:40:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 21:40:53] magicA250
[2026-01-09 21:40:53] apptainer works
[2026-01-09 21:40:53] Set ATHENA_PROC_NUMBER=4
[2026-01-09 21:40:53] Set ATHENA_CORE_NUMBER=4
[2026-01-09 21:40:53] Starting ATLAS job with PandaID=6963155393
[2026-01-09 21:40:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 23:18:14]  *** The last 200 lines of the pilot log: ***
[2026-01-09 23:18:14] 2026-01-09 22:17:40,831 | INFO     | process IDs to be killed: [2883194] (in reverse order)
[2026-01-09 23:18:14] 2026-01-09 22:17:40,864 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 23:18:14] 2026-01-09 22:17:40,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 23:18:14] 2026-01-09 22:17:40,866 | INFO     | did not find any defunct processes belonging to 2883194
[2026-01-09 23:18:14] 2026-01-09 22:17:40,867 | INFO     | did not find any defunct processes belonging to 2883194
[2026-01-09 23:18:14] 2026-01-09 22:17:40,867 | INFO     | ready for new job
[2026-01-09 23:18:14] 2026-01-09 22:17:40,867 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 23:18:14] 2026-01-09 22:17:40,868 | INFO     | ***************************************
[2026-01-09 23:18:14] 2026-01-09 22:17:40,868 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 23:18:14] 2026-01-09 22:17:40,868 | INFO     | ***************************************
[2026-01-09 23:18:14] 2026-01-09 22:17:40,868 | INFO     | 
[2026-01-09 23:18:14] 2026-01-09 22:17:40,869 | INFO     | architecture information:
[2026-01-09 23:18:14] 2026-01-09 22:17:40,869 | INFO     | executing command: cat /etc/os-release
[2026-01-09 23:18:14] 2026-01-09 22:17:40,883 | INFO     | cat /etc/os-release:
[2026-01-09 23:18:14] NAME="CentOS Linux"
[2026-01-09 23:18:14] VERSION="7 (Core)"
[2026-01-09 23:18:14] ID="centos"
[2026-01-09 23:18:14] ID_LIKE="rhel fedora"
[2026-01-09 23:18:14] VERSION_ID="7"
[2026-01-09 23:18:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 23:18:14] ANSI_COLOR="0;31"
[2026-01-09 23:18:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 23:18:14] HOME_URL="https://www.centos.org/"
[2026-01-09 23:18:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 23:18:14] 
[2026-01-09 23:18:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 23:18:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 23:18:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 23:18:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 23:18:14] 
[2026-01-09 23:18:14] 2026-01-09 22:17:40,883 | INFO     | ***************************************
[2026-01-09 23:18:14] 2026-01-09 22:17:41,386 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 23:18:14] 2026-01-09 22:17:41,404 | INFO     | sufficient remaining disk space (333593968640 B)
[2026-01-09 23:18:14] 2026-01-09 22:17:41,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 23:18:14] 2026-01-09 22:17:41,405 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 23:18:14] 2026-01-09 22:17:41,405 | INFO     | update_server=False
[2026-01-09 23:18:14] 2026-01-09 22:17:41,405 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 23:18:14] 2026-01-09 22:17:41,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:18:14] 2026-01-09 22:17:41,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 23:18:14] 2026-01-09 22:17:41,405 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 23:18:14] 2026-01-09 22:17:41,405 | INFO     | aborting loop
[2026-01-09 23:18:14] 2026-01-09 22:17:42,113 | INFO     | all data control threads have been joined
[2026-01-09 23:18:14] 2026-01-09 22:17:42,409 | INFO     | [job] job monitor thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:42,410 | INFO     | [job] retrieve thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:42,410 | INFO     | [job] queue monitor thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:42,506 | INFO     | all payload control threads have been joined
[2026-01-09 23:18:14] 2026-01-09 22:17:42,521 | INFO     | [data] copytool_in thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:42,671 | INFO     | all job control threads have been joined
[2026-01-09 23:18:14] 2026-01-09 22:17:42,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 23:18:14] 2026-01-09 22:17:42,890 | INFO     | [payload] failed_post thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,052 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,115 | INFO     | [data] control thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,155 | INFO     | [job] validate thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,499 | INFO     | [payload] validate_post thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,511 | INFO     | [payload] control thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,644 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,677 | INFO     | [job] control thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:43,820 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:44,886 | INFO     | [data] copytool_out thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:45,412 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:17:52,061 | INFO     | job.realtimelogging is not enabled
[2026-01-09 23:18:14] 2026-01-09 22:17:53,067 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 23:18:14] 2026-01-09 22:18:07,937 | INFO     | [monitor] cgroup control has ended
[2026-01-09 23:18:14] 2026-01-09 22:18:09,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490799359808)>', '<ExcThread(monitor, started 140490284443392)>']
[2026-01-09 23:18:14] 2026-01-09 22:18:11,912 | INFO     | PID=2876638 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 23:18:14] 2026-01-09 22:18:11,912 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 23:18:14] 2026-01-09 22:18:11,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 23:18:14] 2026-01-09 22:18:11,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 23:18:14] 2026-01-09 22:18:11,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 23:18:14] 2026-01-09 22:18:11,912 | INFO     | [monitor] control thread has ended
[2026-01-09 23:18:14] 2026-01-09 22:18:14,399 | INFO     | all workflow threads have been joined
[2026-01-09 23:18:14] 2026-01-09 22:18:14,400 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 23:18:14] 2026-01-09 22:18:14,400 | INFO     | traces error code: 0
[2026-01-09 23:18:14] 2026-01-09 22:18:14,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 23:18:14] 2026-01-09 22:18:14,481 [wrapper] ==== pilot stdout END ====
[2026-01-09 23:18:14] 2026-01-09 22:18:14,485 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 23:18:14] 2026-01-09 22:18:14,489 [wrapper] pilotpid: 2876638
[2026-01-09 23:18:14] 2026-01-09 22:18:14,494 [wrapper] Pilot exit status: 0
[2026-01-09 23:18:14] 2026-01-09 22:18:14,505 [wrapper] pandaids: 6963155393
[2026-01-09 23:18:14] 2026-01-09 22:18:14,528 [wrapper] cleanup supervisor_pilot 2895482 2876639
[2026-01-09 23:18:14] 2026-01-09 22:18:14,532 [wrapper] Test setup, not cleaning
[2026-01-09 23:18:14] 2026-01-09 22:18:14,536 [wrapper] apfmon messages muted
[2026-01-09 23:18:14] 2026-01-09 22:18:14,540 [wrapper] ==== wrapper stdout END ====
[2026-01-09 23:18:14] 2026-01-09 22:18:14,544 [wrapper] ==== wrapper stderr END ====
[2026-01-09 23:18:14]  *** Error codes and diagnostics ***
[2026-01-09 23:18:14]     "exeErrorCode": 0,
[2026-01-09 23:18:14]     "exeErrorDiag": "",
[2026-01-09 23:18:14]     "pilotErrorCode": 0,
[2026-01-09 23:18:14]     "pilotErrorDiag": "",
[2026-01-09 23:18:14]  *** Listing of results directory ***
[2026-01-09 23:18:14] total 432868
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 23:18:14] -rwx------ 1 boinc boinc     36322 Jan  8 20:06 runpilot2-wrapper.sh
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:07 queuedata.json
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc       100 Jan  9 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 23:18:14] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 21:40 run_atlas
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc       105 Jan  9 21:40 job.xml
[2026-01-09 23:18:14] -rw-r--r-- 2 boinc boinc 222873864 Jan  9 21:40 EVNT.47898824._001186.pool.root.1
[2026-01-09 23:18:14] -rw-r--r-- 2 boinc boinc    592396 Jan  9 21:40 input.tar.gz
[2026-01-09 23:18:14] -rw-r--r-- 2 boinc boinc     15847 Jan  9 21:40 start_atlas.sh
[2026-01-09 23:18:14] drwxrwx--x 2 boinc boinc      4096 Jan  9 21:40 shared
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc         0 Jan  9 21:40 boinc_setup_complete
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc      6378 Jan  9 21:40 init_data.xml
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc         0 Jan  9 21:40 boinc_lockfile
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc      2520 Jan  9 21:40 pandaJob.out
[2026-01-09 23:18:14] -rw------- 1 boinc boinc    989381 Jan  9 21:41 agis_schedconf.cvmfs.json
[2026-01-09 23:18:14] -rw------- 1 boinc boinc   1516240 Jan  9 21:41 agis_ddmendpoints.agis.ALL.json
[2026-01-09 23:18:14] drwx------ 5 boinc boinc      4096 Jan  9 21:41 pilot3
[2026-01-09 23:18:14] -rw------- 1 boinc boinc 214200851 Jan  9 23:17 HITS.47898826._030643.pool.root.1
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc       530 Jan  9 23:17 boinc_task_state.xml
[2026-01-09 23:18:14] -rw------- 1 boinc boinc      1024 Jan  9 23:17 memory_monitor_summary.json
[2026-01-09 23:18:14] -rw------- 1 boinc boinc        95 Jan  9 23:17 pilot_heartbeat.json
[2026-01-09 23:18:14] -rw------- 1 boinc boinc    293871 Jan  9 23:17 log.47898826._030643.job.log.tgz.1
[2026-01-09 23:18:14] -rw------- 1 boinc boinc      7773 Jan  9 23:17 heartbeat.json
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc      8192 Jan  9 23:18 boinc_mmap_file
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc        27 Jan  9 23:18 wrapper_checkpoint.txt
[2026-01-09 23:18:14] -rw------- 1 boinc boinc      4824 Jan  9 23:18 pilotlog.txt
[2026-01-09 23:18:14] -rw------- 1 boinc boinc    843969 Jan  9 23:18 log.47898826._030643.job.log.1
[2026-01-09 23:18:14] -rw------- 1 boinc boinc       357 Jan  9 23:18 output.list
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc       620 Jan  9 23:18 runtime_log
[2026-01-09 23:18:14] -rw------- 1 boinc boinc   1157120 Jan  9 23:18 result.tar.gz
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc      8912 Jan  9 23:18 runtime_log.err
[2026-01-09 23:18:14] -rw------- 1 boinc boinc       662 Jan  9 23:18 WwDMDmKWAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRClKDmCvkfPo.diag
[2026-01-09 23:18:14] -rw-r--r-- 1 boinc boinc     10181 Jan  9 23:18 stderr.txt
[2026-01-09 23:18:14] HITS file was successfully produced:
[2026-01-09 23:18:14] -rw------- 1 boinc boinc 214200851 Jan  9 23:17 shared/HITS.pool.root.1
[2026-01-09 23:18:14]  *** Contents of shared directory: ***
[2026-01-09 23:18:14] total 428572
[2026-01-09 23:18:14] -rw-r--r-- 2 boinc boinc 222873864 Jan  9 21:40 ATLAS.root_0
[2026-01-09 23:18:14] -rw-r--r-- 2 boinc boinc    592396 Jan  9 21:40 input.tar.gz
[2026-01-09 23:18:14] -rw-r--r-- 2 boinc boinc     15847 Jan  9 21:40 start_atlas.sh
[2026-01-09 23:18:14] -rw------- 1 boinc boinc 214200851 Jan  9 23:17 HITS.pool.root.1
[2026-01-09 23:18:14] -rw------- 1 boinc boinc   1157120 Jan  9 23:18 result.tar.gz
23:18:16 (2872859): run_atlas exited; CPU time 22066.727639
23:18:16 (2872859): called boinc_finish(0)

</stderr_txt>
]]>

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