Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:53:35 (17916): wrapper (7.7.26015): starting
00:53:35 (17916): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:53:35] Arguments: --nthreads 12
[2026-01-09 00:53:35] Threads: 12
[2026-01-09 00:53:35] Checking for CVMFS
[2026-01-09 00:53:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:53:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:53:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:53:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:53:36] 2.11.2.0 3009 135913 96720 154933 0 59 18061608 20275201 1 130560 0 49046230 99.878 8082398 39466 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:53:36] CVMFS is ok
[2026-01-09 00:53:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:53:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:53:36] Further information can be found at the LHC@home message board.
[2026-01-09 00:53:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:53:36] Checking for apptainer binary...
[2026-01-09 00:53:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:53:36] Running /usr/bin/apptainer --version
[2026-01-09 00:53:36] apptainer version 1.3.2-1.el7
[2026-01-09 00:53:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:53:37] c-115-42.aglt2.org
[2026-01-09 00:53:37] apptainer works
[2026-01-09 00:53:37] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:53:37] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:53:37] Starting ATLAS job with PandaID=6963165942
[2026-01-09 00:53:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 02:32:06]  *** The last 200 lines of the pilot log: ***
[2026-01-09 02:32:06]  mtime=0
[2026-01-09 02:32:06]  protocol_id=None
[2026-01-09 02:32:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 02:32:06]  replicas=None
[2026-01-09 02:32:06]  scope=mc23_13p6TeV
[2026-01-09 02:32:06]  status=None
[2026-01-09 02:32:06]  status_code=0
[2026-01-09 02:32:06]  storage_token=
[2026-01-09 02:32:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963165942/log.47898826._035055.job.log.tgz.1
[2026-01-09 02:32:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/02/log.47898826._035055.job.log.tgz.1
[2026-01-09 02:32:06]  workdir=None
[2026-01-09 02:32:06] ]
[2026-01-09 02:32:06] 2026-01-09 07:31:09,119 | INFO     | transferring file log.47898826._035055.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963165942/log.47898826._035055.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 02:32:06] 2026-01-09 07:31:09,119 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963165942/log.47898826._035055.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._035055.job
[2026-01-09 02:32:06] 2026-01-09 07:31:09,140 | INFO     | adding to output.list: log.47898826._035055.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/02/log.47898826._035055.job.log.tg
[2026-01-09 02:32:06] 2026-01-09 07:31:09,141 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 02:32:06] 2026-01-09 07:31:09,141 | INFO     | summary of transferred files:
[2026-01-09 02:32:06] 2026-01-09 07:31:09,142 | INFO     |  -- lfn=log.47898826._035055.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 02:32:06] 2026-01-09 07:31:09,142 | INFO     | stage-out finished correctly
[2026-01-09 02:32:06] 2026-01-09 07:31:09,785 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 02:32:06] 2026-01-09 07:31:09,857 | INFO     | job 6963165942 has state=finished
[2026-01-09 02:32:06] 2026-01-09 07:31:09,857 | INFO     | preparing for final server update for job 6963165942 in state='finished'
[2026-01-09 02:32:06] 2026-01-09 07:31:09,858 | INFO     | this job has now completed (state=finished)
[2026-01-09 02:32:06] 2026-01-09 07:31:09,858 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 02:32:06] 2026-01-09 07:31:09,858 | INFO     | log transfer has been attempted: DONE
[2026-01-09 02:32:06] 2026-01-09 07:31:09,859 | INFO     | job 6963165942 has finished - writing final server update
[2026-01-09 02:32:06] 2026-01-09 07:31:09,859 | INFO     | total number of processed events: 400 (read)
[2026-01-09 02:32:06] 2026-01-09 07:31:09,860 | INFO     | executing command: lscpu
[2026-01-09 02:32:06] 2026-01-09 07:31:09,887 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 02:32:06] 2026-01-09 07:31:09,977 | INFO     | time since job start (5838s) is within the limit (349056.0s)
[2026-01-09 02:32:06] 2026-01-09 07:31:09,978 | INFO     | 5840s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 02:32:06] 2026-01-09 07:31:11,054 | INFO     | monitor loop #432: job 0:6963165942 is in state 'finished'
[2026-01-09 02:32:06] 2026-01-09 07:31:11,055 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 02:32:06] 2026-01-09 07:31:11,983 | INFO     | time since job start (5840s) is within the limit (349056.0s)
[2026-01-09 02:32:06] 2026-01-09 07:31:13,100 | INFO     | PID=21617 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 02:32:06] 2026-01-09 07:31:13,558 | INFO     | monitor loop #433: job 0:6963165942 is in state 'finished'
[2026-01-09 02:32:06] 2026-01-09 07:31:13,558 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,100 | INFO     | time since job start (5843s) is within the limit (349056.0s)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,465 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 02:32:06] 2026-01-09 07:31:14,469 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,471 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963165942/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,472 | INFO     | extracted standard info from prmon json
[2026-01-09 02:32:06] 2026-01-09 07:31:14,472 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 02:32:06] 2026-01-09 07:31:14,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 02:32:06] 2026-01-09 07:31:14,473 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 02:32:06] 2026-01-09 07:31:14,473 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 02:32:06] 2026-01-09 07:31:14,475 | INFO     | fitting pss+swap vs Time
[2026-01-09 02:32:06] 2026-01-09 07:31:14,476 | INFO     | sum of square deviations: 218571540.0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,476 | INFO     | sum of deviations: -3499907390.9999995
[2026-01-09 02:32:06] 2026-01-09 07:31:14,476 | INFO     | mean x: 1767941049.0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,476 | INFO     | mean y: 2713614.382022472
[2026-01-09 02:32:06] 2026-01-09 07:31:14,477 | INFO     | intersect: 28312117227.713352
[2026-01-09 02:32:06] 2026-01-09 07:31:14,477 | INFO     | chi2: 0.10605911144897134
[2026-01-09 02:32:06] 2026-01-09 07:31:14,477 | INFO     | current memory leak: -16.01 B/s (using 89 data points, chi2=0.11)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,477 | INFO     | could have reported an average CPU frequency of 2270 MHz (7 samples)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,477 | INFO     | ..............................
[2026-01-09 02:32:06] 2026-01-09 07:31:14,477 | INFO     | . Timing measurements:
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | . get job = 0 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | . initial setup = 2 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | . payload setup = 6 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | . stage-in = 0 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | . payload execution = 5809 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | . stage-out = 0 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | . log creation = 0 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,478 | INFO     | ..............................
[2026-01-09 02:32:06] 2026-01-09 07:31:14,689 | INFO     | 
[2026-01-09 02:32:06] 2026-01-09 07:31:14,689 | INFO     | job summary report
[2026-01-09 02:32:06] 2026-01-09 07:31:14,689 | INFO     | --------------------------------------------------
[2026-01-09 02:32:06] 2026-01-09 07:31:14,689 | INFO     | PanDA job id: 6963165942
[2026-01-09 02:32:06] 2026-01-09 07:31:14,690 | INFO     | task id: 47898826
[2026-01-09 02:32:06] 2026-01-09 07:31:14,690 | INFO     | errors: (none)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,690 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 02:32:06] 2026-01-09 07:31:14,690 | INFO     | pilot state: finished 
[2026-01-09 02:32:06] 2026-01-09 07:31:14,690 | INFO     | transexitcode: 0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,690 | INFO     | exeerrorcode: 0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,691 | INFO     | exeerrordiag: 
[2026-01-09 02:32:06] 2026-01-09 07:31:14,691 | INFO     | exitcode: 0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,691 | INFO     | exitmsg: OK
[2026-01-09 02:32:06] 2026-01-09 07:31:14,691 | INFO     | cpuconsumptiontime: 61671 s
[2026-01-09 02:32:06] 2026-01-09 07:31:14,691 | INFO     | nevents: 400
[2026-01-09 02:32:06] 2026-01-09 07:31:14,692 | INFO     | neventsw: 0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,692 | INFO     | pid: 28042
[2026-01-09 02:32:06] 2026-01-09 07:31:14,692 | INFO     | pgrp: 28042
[2026-01-09 02:32:06] 2026-01-09 07:31:14,692 | INFO     | corecount: 12
[2026-01-09 02:32:06] 2026-01-09 07:31:14,692 | INFO     | event service: False
[2026-01-09 02:32:06] 2026-01-09 07:31:14,692 | INFO     | sizes: {0: 2283744, 1: 2283999, 5: 2284261, 12: 2284317, 5820: 2310985, 5822: 2320167, 5827: 2320305}
[2026-01-09 02:32:06] 2026-01-09 07:31:14,693 | INFO     | --------------------------------------------------
[2026-01-09 02:32:06] 2026-01-09 07:31:14,693 | INFO     | 
[2026-01-09 02:32:06] 2026-01-09 07:31:14,693 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 02:32:06] 2026-01-09 07:31:14,717 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,718 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,718 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,718 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,718 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,720 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,720 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,720 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 02:32:06] 2026-01-09 07:31:14,721 | INFO     | job 6963165942 has completed (purged errors)
[2026-01-09 02:32:06] 2026-01-09 07:31:14,721 | INFO     | overall cleanup function is called
[2026-01-09 02:32:06] 2026-01-09 07:31:15,725 | INFO     | --- collectZombieJob: --- 10, [28042]
[2026-01-09 02:32:06] 2026-01-09 07:31:15,725 | INFO     | zombie collector waiting for pid 28042
[2026-01-09 02:32:06] 2026-01-09 07:31:15,725 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 02:32:06] 2026-01-09 07:31:15,725 | INFO     | collected zombie processes
[2026-01-09 02:32:06] 2026-01-09 07:31:15,726 | INFO     | will attempt to kill all subprocesses of pid=28042
[2026-01-09 02:32:06] 2026-01-09 07:31:15,816 | INFO     | process IDs to be killed: [28042] (in reverse order)
[2026-01-09 02:32:06] 2026-01-09 07:31:15,867 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 02:32:06] 2026-01-09 07:31:15,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 02:32:06] 2026-01-09 07:31:15,871 | INFO     | did not find any defunct processes belonging to 28042
[2026-01-09 02:32:06] 2026-01-09 07:31:15,875 | INFO     | did not find any defunct processes belonging to 28042
[2026-01-09 02:32:06] 2026-01-09 07:31:15,875 | INFO     | ready for new job
[2026-01-09 02:32:06] 2026-01-09 07:31:15,876 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 02:32:06] 2026-01-09 07:31:15,877 | INFO     | ***************************************
[2026-01-09 02:32:06] 2026-01-09 07:31:15,877 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 02:32:06] 2026-01-09 07:31:15,877 | INFO     | ***************************************
[2026-01-09 02:32:06] 2026-01-09 07:31:15,878 | INFO     | 
[2026-01-09 02:32:06] 2026-01-09 07:31:15,878 | INFO     | architecture information:
[2026-01-09 02:32:06] 2026-01-09 07:31:15,879 | INFO     | executing command: cat /etc/os-release
[2026-01-09 02:32:06] 2026-01-09 07:31:15,893 | INFO     | cat /etc/os-release:
[2026-01-09 02:32:06] NAME="CentOS Linux"
[2026-01-09 02:32:06] VERSION="7 (Core)"
[2026-01-09 02:32:06] ID="centos"
[2026-01-09 02:32:06] ID_LIKE="rhel fedora"
[2026-01-09 02:32:06] VERSION_ID="7"
[2026-01-09 02:32:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 02:32:06] ANSI_COLOR="0;31"
[2026-01-09 02:32:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 02:32:06] HOME_URL="https://www.centos.org/"
[2026-01-09 02:32:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 02:32:06] 
[2026-01-09 02:32:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 02:32:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 02:32:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 02:32:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 02:32:06] 
[2026-01-09 02:32:06] 2026-01-09 07:31:15,893 | INFO     | ***************************************
[2026-01-09 02:32:06] 2026-01-09 07:31:16,394 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 02:32:06] 2026-01-09 07:31:16,411 | INFO     | sufficient remaining disk space (18539872256 B)
[2026-01-09 02:32:06] 2026-01-09 07:31:16,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 02:32:06] 2026-01-09 07:31:16,412 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 02:32:06] 2026-01-09 07:31:16,412 | INFO     | update_server=False
[2026-01-09 02:32:06] 2026-01-09 07:31:16,412 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 02:32:06] 2026-01-09 07:31:16,413 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:32:06] 2026-01-09 07:31:16,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 02:32:06] 2026-01-09 07:31:17,013 | INFO     | all data control threads have been joined
[2026-01-09 02:32:06] 2026-01-09 07:31:17,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:32:06] 2026-01-09 07:31:17,067 | INFO     | aborting loop
[2026-01-09 02:32:06] 2026-01-09 07:31:17,240 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 02:32:06] 2026-01-09 07:31:17,418 | INFO     | [job] retrieve thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:17,419 | INFO     | [job] queue monitor thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:17,502 | INFO     | all job control threads have been joined
[2026-01-09 02:32:06] 2026-01-09 07:31:17,626 | INFO     | [data] copytool_in thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:17,655 | INFO     | all payload control threads have been joined
[2026-01-09 02:32:06] 2026-01-09 07:31:17,729 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,018 | INFO     | [data] control thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,068 | INFO     | [job] job monitor thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,397 | INFO     | [payload] validate_post thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,454 | INFO     | [job] validate thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,508 | INFO     | [job] control thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,661 | INFO     | [payload] control thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,844 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,853 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:18,974 | INFO     | [payload] failed_post thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:19,245 | INFO     | [data] copytool_out thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:20,419 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:27,185 | INFO     | job.realtimelogging is not enabled
[2026-01-09 02:32:06] 2026-01-09 07:31:28,190 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 02:32:06] 2026-01-09 07:31:47,296 | INFO     | PID=21617 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 02:32:06] 2026-01-09 07:31:47,296 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 02:32:06] 2026-01-09 07:31:47,296 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 02:32:06] 2026-01-09 07:31:47,296 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 02:32:06] 2026-01-09 07:32:00,483 | INFO     | [monitor] cgroup control has ended
[2026-01-09 02:32:06] 2026-01-09 07:32:01,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140563222943552)>', '<ExcThread(monitor, started 140562166429440)>']
[2026-01-09 02:32:06] 2026-01-09 07:32:01,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 02:32:06] 2026-01-09 07:32:01,366 | INFO     | [monitor] control thread has ended
[2026-01-09 02:32:06] 2026-01-09 07:32:06,067 | INFO     | all workflow threads have been joined
[2026-01-09 02:32:06] 2026-01-09 07:32:06,067 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 02:32:06] 2026-01-09 07:32:06,074 | INFO     | traces error code: 0
[2026-01-09 02:32:06] 2026-01-09 07:32:06,075 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 02:32:06] 2026-01-09 07:32:06,173 [wrapper] ==== pilot stdout END ====
[2026-01-09 02:32:06] 2026-01-09 07:32:06,176 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 02:32:06] 2026-01-09 07:32:06,180 [wrapper] pilotpid: 21617
[2026-01-09 02:32:06] 2026-01-09 07:32:06,184 [wrapper] Pilot exit status: 0
[2026-01-09 02:32:06] 2026-01-09 07:32:06,201 [wrapper] pandaids: 6963165942
[2026-01-09 02:32:06] 2026-01-09 07:32:06,248 [wrapper] cleanup supervisor_pilot  7192 21618
[2026-01-09 02:32:06] 2026-01-09 07:32:06,251 [wrapper] Test setup, not cleaning
[2026-01-09 02:32:06] 2026-01-09 07:32:06,255 [wrapper] apfmon messages muted
[2026-01-09 02:32:06] 2026-01-09 07:32:06,259 [wrapper] ==== wrapper stdout END ====
[2026-01-09 02:32:06] 2026-01-09 07:32:06,263 [wrapper] ==== wrapper stderr END ====
[2026-01-09 02:32:06]  *** Error codes and diagnostics ***
[2026-01-09 02:32:06]     "exeErrorCode": 0,
[2026-01-09 02:32:06]     "exeErrorDiag": "",
[2026-01-09 02:32:06]     "pilotErrorCode": 0,
[2026-01-09 02:32:06]     "pilotErrorDiag": "",
[2026-01-09 02:32:06]  *** Listing of results directory ***
[2026-01-09 02:32:06] total 437696
[2026-01-09 02:32:06] -rwx------ 1 boincer umatlas     36322 Jan  8 19:56 runpilot2-wrapper.sh
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:57 queuedata.json
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas       100 Jan  9 00:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 02:32:06] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 00:53 run_atlas
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas       105 Jan  9 00:53 job.xml
[2026-01-09 02:32:06] -rw-r--r-- 2 boincer umatlas 225183020 Jan  9 00:53 EVNT.47898824._001358.pool.root.1
[2026-01-09 02:32:06] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:53 start_atlas.sh
[2026-01-09 02:32:06] drwxrwx--x 2 boincer umatlas      4096 Jan  9 00:53 shared
[2026-01-09 02:32:06] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 00:53 input.tar.gz
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas         0 Jan  9 00:53 boinc_lockfile
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 00:53 pandaJob.out
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas        57 Jan  9 00:53 setup.sh.local
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas    989771 Jan  9 00:53 agis_schedconf.cvmfs.json
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas   1516240 Jan  9 00:53 agis_ddmendpoints.agis.ALL.json
[2026-01-09 02:32:06] drwx------ 5 boincer umatlas      4096 Jan  9 00:53 pilot3
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas      5954 Jan  9 02:28 init_data.xml
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas 216641095 Jan  9 02:30 HITS.47898826._035055.pool.root.1
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas       529 Jan  9 02:30 boinc_task_state.xml
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas      1047 Jan  9 02:31 memory_monitor_summary.json
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas        95 Jan  9 02:31 pilot_heartbeat.json
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas    397365 Jan  9 02:31 log.47898826._035055.job.log.tgz.1
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas      7850 Jan  9 02:31 heartbeat.json
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 02:31 boinc_mmap_file
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas        27 Jan  9 02:31 wrapper_checkpoint.txt
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas      4818 Jan  9 02:32 pilotlog.txt
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas    832892 Jan  9 02:32 log.47898826._035055.job.log.1
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas       357 Jan  9 02:32 output.list
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas       620 Jan  9 02:32 runtime_log
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas   1249280 Jan  9 02:32 result.tar.gz
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas       659 Jan  9 02:32 U48NDmEzFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQXgKDmTGOtUn.diag
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 02:32 runtime_log.err
[2026-01-09 02:32:06] -rw-r--r-- 1 boincer umatlas     21827 Jan  9 02:32 stderr.txt
[2026-01-09 02:32:06] HITS file was successfully produced:
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas 216641095 Jan  9 02:30 shared/HITS.pool.root.1
[2026-01-09 02:32:06]  *** Contents of shared directory: ***
[2026-01-09 02:32:06] total 433292
[2026-01-09 02:32:06] -rw-r--r-- 2 boincer umatlas 225183020 Jan  9 00:53 ATLAS.root_0
[2026-01-09 02:32:06] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:53 start_atlas.sh
[2026-01-09 02:32:06] -rw-r--r-- 2 boincer umatlas    592394 Jan  9 00:53 input.tar.gz
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas 216641095 Jan  9 02:30 HITS.pool.root.1
[2026-01-09 02:32:06] -rw------- 1 boincer umatlas   1249280 Jan  9 02:32 result.tar.gz
02:32:08 (17916): run_atlas exited; CPU time 61636.208005
02:32:08 (17916): called boinc_finish(0)

</stderr_txt>
]]>

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