Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-09 01:20:08 (22056): vboxwrapper version 26210
2026-01-09 01:20:08 (22056): BOINC client version: 8.0.2
2026-01-09 01:20:08 (22056): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2026-01-09 01:20:08 (22056): Successfully copied 'init_data.xml' to the shared directory.
2026-01-09 01:20:09 (22056): Create VM. (boinc_4716b04f80fce2ab, slot#3)
2026-01-09 01:20:09 (22056): Setting Memory Size for VM. (4800MB)
2026-01-09 01:20:09 (22056): Setting CPU Count for VM. (8)
2026-01-09 01:20:10 (22056): Setting Chipset Options for VM.
2026-01-09 01:20:10 (22056): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-09 01:20:10 (22056): Setting Boot Options for VM.
2026-01-09 01:20:11 (22056): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-09 01:20:11 (22056): Enabling VM Network Access.
2026-01-09 01:20:11 (22056): Disabling USB Support for VM.
2026-01-09 01:20:11 (22056): Disabling COM Port Support for VM.
2026-01-09 01:20:12 (22056): Disabling LPT Port Support for VM.
2026-01-09 01:20:12 (22056): Disabling Audio Support for VM.
2026-01-09 01:20:12 (22056): Disabling Clipboard Support for VM.
2026-01-09 01:20:12 (22056): Disabling Drag and Drop Support for VM.
2026-01-09 01:20:13 (22056): Adding storage controller(s) to VM.
2026-01-09 01:20:13 (22056): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-09 01:20:14 (22056): Adding VirtualBox Guest Additions to VM.
2026-01-09 01:20:14 (22056): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-09 01:20:14 (22056): forwarding host port 59747 to guest port 80
2026-01-09 01:20:14 (22056): Enabling remote desktop for VM.
2026-01-09 01:20:15 (22056): Required extension pack not installed, remote desktop not enabled.
2026-01-09 01:20:15 (22056): Enabling shared directory for VM.
2026-01-09 01:20:15 (22056): Starting VM using VBoxManage interface. (boinc_4716b04f80fce2ab, slot#3)
2026-01-09 01:20:20 (22056): Successfully started VM. (PID = '44948')
2026-01-09 01:20:20 (22056): Reporting VM Process ID to BOINC.
2026-01-09 01:20:20 (22056): Guest Log: BIOS: VirtualBox 7.0.6
2026-01-09 01:20:20 (22056): Guest Log: CPUID EDX: 0x178bfbff
2026-01-09 01:20:20 (22056): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-09 01:20:20 (22056): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-09 01:20:20 (22056): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-09 01:20:20 (22056): Detected: Web Application Enabled (http://localhost:59747)
2026-01-09 01:20:20 (22056): Preference change detected
2026-01-09 01:20:20 (22056): Setting CPU throttle for VM. (50%)
2026-01-09 01:20:20 (22056): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-09 01:20:22 (22056): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-09 01:20:22 (22056): Guest Log: BIOS: Booting from Hard Disk...
2026-01-09 01:20:25 (22056): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-09 01:20:25 (22056): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-09 01:20:25 (22056): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-09 01:20:29 (22056): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-09 01:20:29 (22056): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-09 01:20:34 (22056): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000103 main     Log opened 2026-01-09T01:20:31.946582000Z
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000195 main     OS Product: Linux
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000223 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000246 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000269 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000269 main     Process ID: 1369
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000269 main     Package type: LINUX_64BITS_GENERIC
2026-01-09 01:20:34 (22056): Guest Log: 00:00:00.000872 main     5.2.32 r132073 started. Verbose level = 0
2026-01-09 01:20:34 (22056): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-09 01:20:34 (22056): Guest Log: [INFO] Mounting shared directory
2026-01-09 01:20:34 (22056): Guest Log: [INFO] Checking for init_data.xml
2026-01-09 01:20:36 (22056): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-09 01:20:36 (22056): Guest Log: [INFO] Detected branch: prod
2026-01-09 01:20:36 (22056): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-09 01:20:36 (22056): Guest Log: Copying input files
2026-01-09 01:20:38 (22056): Guest Log: Copied input files into RunAtlas.
2026-01-09 01:20:38 (22056): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-09 01:20:38 (22056): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-09 01:20:38 (22056): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-09 01:20:38 (22056): Guest Log: Further information can be found at the LHC@home message board.
2026-01-09 01:20:44 (22056): Guest Log: 00:00:10.005701 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 566 935 000ns (GuestNow=1 767 939 643 515 037 000 ns GuestLast=1 767 921 631 948 102 000 ns fSetTimeLastLoop=true )
2026-01-09 01:20:45 (22056): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-09 01:20:46 (22056): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-09 01:20:46 (22056): Guest Log: 2.6.3.0 1649 0 32192 154934 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-09 01:20:47 (22056): Guest Log: copied the webapp to /var/www
2026-01-09 01:20:47 (22056): Guest Log: ATHENA_PROC_NUMBER=8
2026-01-09 01:20:47 (22056): Guest Log: ATHENA_CORE_NUMBER=8
2026-01-09 01:20:47 (22056): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-09 01:20:47 (22056): Guest Log:  *** Starting ATLAS job. (PandaID=6963165630 taskID=47898826) ***
2026-01-09 01:20:49 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:21:09 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:21:49 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:22:09 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:24:19 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:24:39 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:26:29 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:26:50 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:26:59 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:27:40 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:29:19 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:29:40 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:29:50 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:30:10 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:31:21 (22056): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:31:41 (22056): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:33:28 (22056): Guest Log:  *** Job finished ***
2026-01-09 01:33:28 (22056): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:15,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:15,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:17,713 | INFO     | [monitor] cgroup control has ended
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:19,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139833702745920)>', '<ExcThread(monitor, started 139833104123648)>']
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:19,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:19,738 | INFO     | [monitor] control thread has ended
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,161 | INFO     | all workflow threads have been joined
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,162 | INFO     | end of generic workflow (traces error code: 0)
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,162 | INFO     | traces error code: 0
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,229 [wrapper] ==== pilot stdout END ====
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,233 [wrapper] ==== wrapper stdout RESUME ====
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,237 [wrapper] pilotpid: 6089
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,240 [wrapper] Pilot exit status: 0
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,387 [wrapper] pandaids: 6963165630
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,408 [wrapper] cleanup supervisor_pilot  6095 6090
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,412 [wrapper] Test setup, not cleaning
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,416 [wrapper] apfmon messages muted
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,420 [wrapper] ==== wrapper stdout END ====
2026-01-09 01:33:28 (22056): Guest Log: 2026-01-09 06:30:24,425 [wrapper] ==== wrapper stderr END ====
2026-01-09 01:33:28 (22056): Guest Log:  *** Error codes and diagnostics ***
2026-01-09 01:33:28 (22056): Guest Log:     "exeErrorCode": 0,
2026-01-09 01:33:28 (22056): Guest Log:     "exeErrorDiag": "",
2026-01-09 01:33:28 (22056): Guest Log:     "pilotErrorCode": 1305,
2026-01-09 01:33:28 (22056): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possi",
2026-01-09 01:33:28 (22056): Guest Log:  *** Listing of results directory ***
2026-01-09 01:33:28 (22056): Guest Log: total 4440
2026-01-09 01:33:28 (22056): Guest Log: -rwx------. 1 atlas atlas   36322 Jan  9 00:56 runpilot2-wrapper.sh
2026-01-09 01:33:28 (22056): Guest Log: -rw-r--r--. 1 atlas atlas  579449 Jan  9 00:57 pilot3.tar.gz
2026-01-09 01:33:28 (22056): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jan  9 00:57 queuedata.json
2026-01-09 01:33:28 (22056): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Jan  9 06:20 init_data.xml
2026-01-09 01:33:28 (22056): Guest Log: -rwxr-xr-x. 1 atlas atlas  592394 Jan  9 06:20 input.tar.gz
2026-01-09 01:33:28 (22056): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Jan  9 06:20 start_atlas.sh
2026-01-09 01:33:28 (22056): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jan  9 06:20 EVNT.47898824._001350.pool.root.1 -> /data/./ATLAS.root_0
2026-01-09 01:33:28 (22056): Guest Log: -rw-r--r--. 1 atlas atlas    2517 Jan  9 06:20 pandaJob.out
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas  989771 Jan  9 06:21 agis_schedconf.cvmfs.json
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas 1516240 Jan  9 06:21 agis_ddmendpoints.agis.ALL.json
2026-01-09 01:33:28 (22056): Guest Log: drwx------. 5 atlas atlas    4096 Jan  9 06:21 pilot3
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas    1016 Jan  9 06:27 memory_monitor_summary.json
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas  225464 Jan  9 06:27 log.47898826._034849.job.log.tgz.1
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas      95 Jan  9 06:29 pilot_heartbeat.json
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas    9718 Jan  9 06:29 heartbeat.json
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas    4805 Jan  9 06:30 pilotlog.txt
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas  125609 Jan  9 06:30 log.47898826._034849.job.log.1
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas     188 Jan  9 06:30 output.list
2026-01-09 01:33:28 (22056): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jan  9 06:30 runtime_log
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas  368640 Jan  9 06:30 result.tar.gz
2026-01-09 01:33:28 (22056): Guest Log: -rw-------. 1 atlas atlas     643 Jan  9 06:30 v78KDmEzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0klKDmC94SXn.diag
2026-01-09 01:33:28 (22056): Guest Log: -rw-r--r--. 1 atlas atlas    8587 Jan  9 06:30 runtime_log.err
2026-01-09 01:33:28 (22056): Guest Log: Looking for outputfile HITS.47898826._034849.pool.root.1
2026-01-09 01:33:28 (22056): Guest Log: No HITS file was produced
2026-01-09 01:33:28 (22056): Guest Log: Successfully finished the ATLAS job!
2026-01-09 01:33:28 (22056): Guest Log: Copying the results back to the shared directory!
2026-01-09 01:33:28 (22056): Guest Log:  *** Contents of shared directory: ***
2026-01-09 01:33:28 (22056): Guest Log: total 219740
2026-01-09 01:33:28 (22056): Guest Log: -rwxrwxrwx. 1 root root 224020505 Jan  9 06:20 ATLAS.root_0
2026-01-09 01:33:28 (22056): Guest Log: -rwxrwxrwx. 1 root root      9004 Jan  9 06:20 init_data.xml
2026-01-09 01:33:28 (22056): Guest Log: -rwxrwxrwx. 1 root root    592394 Jan  9 05:49 input.tar.gz
2026-01-09 01:33:28 (22056): Guest Log: -rwxrwxrwx. 1 root root    368640 Jan  9  2026 result.tar.gz
2026-01-09 01:33:28 (22056): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 05:49 start_atlas.sh
2026-01-09 01:33:28 (22056): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-09 01:33:28 (22056): VM Completion File Detected.
2026-01-09 01:33:28 (22056): Powering off VM.
2026-01-09 01:33:28 (22056): Successfully stopped VM.
2026-01-09 01:33:28 (22056): Deregistering VM. (boinc_4716b04f80fce2ab, slot#3)
2026-01-09 01:33:28 (22056): Removing network bandwidth throttle group from VM.
2026-01-09 01:33:28 (22056): Removing VM from VirtualBox.
2026-01-09 01:33:33 (22056): called boinc_finish(0)

</stderr_txt>
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