Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-09 01:33:06 (60072): vboxwrapper version 26210
2026-01-09 01:33:06 (60072): BOINC client version: 8.0.2
2026-01-09 01:33:07 (60072): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2026-01-09 01:33:07 (60072): Successfully copied 'init_data.xml' to the shared directory.
2026-01-09 01:33:07 (60072): Create VM. (boinc_5977c75ec76909d6, slot#1)
2026-01-09 01:33:08 (60072): Setting Memory Size for VM. (4800MB)
2026-01-09 01:33:08 (60072): Setting CPU Count for VM. (8)
2026-01-09 01:33:08 (60072): Setting Chipset Options for VM.
2026-01-09 01:33:08 (60072): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-09 01:33:09 (60072): Setting Boot Options for VM.
2026-01-09 01:33:09 (60072): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-09 01:33:09 (60072): Enabling VM Network Access.
2026-01-09 01:33:10 (60072): Disabling USB Support for VM.
2026-01-09 01:33:10 (60072): Disabling COM Port Support for VM.
2026-01-09 01:33:10 (60072): Disabling LPT Port Support for VM.
2026-01-09 01:33:10 (60072): Disabling Audio Support for VM.
2026-01-09 01:33:11 (60072): Disabling Clipboard Support for VM.
2026-01-09 01:33:11 (60072): Disabling Drag and Drop Support for VM.
2026-01-09 01:33:11 (60072): Adding storage controller(s) to VM.
2026-01-09 01:33:12 (60072): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-09 01:33:12 (60072): Adding VirtualBox Guest Additions to VM.
2026-01-09 01:33:12 (60072): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-09 01:33:13 (60072): forwarding host port 50029 to guest port 80
2026-01-09 01:33:13 (60072): Enabling remote desktop for VM.
2026-01-09 01:33:13 (60072): Required extension pack not installed, remote desktop not enabled.
2026-01-09 01:33:13 (60072): Enabling shared directory for VM.
2026-01-09 01:33:14 (60072): Starting VM using VBoxManage interface. (boinc_5977c75ec76909d6, slot#1)
2026-01-09 01:33:18 (60072): Successfully started VM. (PID = '51124')
2026-01-09 01:33:18 (60072): Reporting VM Process ID to BOINC.
2026-01-09 01:33:18 (60072): Guest Log: BIOS: VirtualBox 7.0.6
2026-01-09 01:33:18 (60072): Guest Log: CPUID EDX: 0x178bfbff
2026-01-09 01:33:18 (60072): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-09 01:33:18 (60072): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-09 01:33:18 (60072): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-09 01:33:18 (60072): Detected: Web Application Enabled (http://localhost:50029)
2026-01-09 01:33:18 (60072): Preference change detected
2026-01-09 01:33:18 (60072): Setting CPU throttle for VM. (50%)
2026-01-09 01:33:19 (60072): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-09 01:33:21 (60072): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-09 01:33:21 (60072): Guest Log: BIOS: Booting from Hard Disk...
2026-01-09 01:33:24 (60072): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-09 01:33:24 (60072): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-09 01:33:24 (60072): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-09 01:33:28 (60072): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-09 01:33:28 (60072): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-09 01:33:32 (60072): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000061 main     Log opened 2026-01-09T01:33:29.837102000Z
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000116 main     OS Product: Linux
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000129 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000140 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000150 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000151 main     Process ID: 1371
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000151 main     Package type: LINUX_64BITS_GENERIC
2026-01-09 01:33:32 (60072): Guest Log: 00:00:00.000519 main     5.2.32 r132073 started. Verbose level = 0
2026-01-09 01:33:32 (60072): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-09 01:33:32 (60072): Guest Log: [INFO] Mounting shared directory
2026-01-09 01:33:32 (60072): Guest Log: [INFO] Checking for init_data.xml
2026-01-09 01:33:34 (60072): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-09 01:33:34 (60072): Guest Log: [INFO] Detected branch: prod
2026-01-09 01:33:34 (60072): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-09 01:33:34 (60072): Guest Log: Copying input files
2026-01-09 01:33:35 (60072): Guest Log: Copied input files into RunAtlas.
2026-01-09 01:33:35 (60072): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-09 01:33:35 (60072): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-09 01:33:35 (60072): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-09 01:33:35 (60072): Guest Log: Further information can be found at the LHC@home message board.
2026-01-09 01:33:42 (60072): Guest Log: 00:00:10.001816 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 862 192 000ns (GuestNow=1 767 940 421 700 513 000 ns GuestLast=1 767 922 409 838 321 000 ns fSetTimeLastLoop=true )
2026-01-09 01:33:44 (60072): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-09 01:33:44 (60072): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-09 01:33:44 (60072): Guest Log: 2.6.3.0 1651 0 32200 154934 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-09 01:33:44 (60072): Guest Log: copied the webapp to /var/www
2026-01-09 01:33:44 (60072): Guest Log: ATHENA_PROC_NUMBER=8
2026-01-09 01:33:44 (60072): Guest Log: ATHENA_CORE_NUMBER=8
2026-01-09 01:33:44 (60072): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-09 01:33:44 (60072): Guest Log:  *** Starting ATLAS job. (PandaID=6963165640 taskID=47898826) ***
2026-01-09 01:33:51 (60072): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:34:12 (60072): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:37:21 (60072): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:37:41 (60072): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:38:21 (60072): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:38:42 (60072): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:40:52 (60072): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:40:53 (60072): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:41:52 (60072): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 01:42:12 (60072): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 01:43:08 (60072): Guest Log:  *** Job finished ***
2026-01-09 01:43:08 (60072): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:24,135 | INFO     | all workflow threads have been joined
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:24,135 | INFO     | end of generic workflow (traces error code: 0)
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:24,135 | INFO     | traces error code: 0
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:24,135 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,793 | INFO     | PID=6083 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,794 | INFO     | found 0 job(s) in 20 queues
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,794 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,794 | INFO     | [monitor] control thread has ended
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,853 [wrapper] ==== pilot stdout END ====
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,857 [wrapper] ==== wrapper stdout RESUME ====
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,859 [wrapper] pilotpid: 6083
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,861 [wrapper] Pilot exit status: 0
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,937 [wrapper] pandaids: 6963165640
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,951 [wrapper] cleanup supervisor_pilot  6089 6084
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,953 [wrapper] Test setup, not cleaning
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,955 [wrapper] apfmon messages muted
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,957 [wrapper] ==== wrapper stdout END ====
2026-01-09 01:43:08 (60072): Guest Log: 2026-01-09 06:41:43,958 [wrapper] ==== wrapper stderr END ====
2026-01-09 01:43:08 (60072): Guest Log:  *** Error codes and diagnostics ***
2026-01-09 01:43:08 (60072): Guest Log:     "exeErrorCode": 0,
2026-01-09 01:43:08 (60072): Guest Log:     "exeErrorDiag": "",
2026-01-09 01:43:08 (60072): Guest Log:     "pilotErrorCode": 1305,
2026-01-09 01:43:08 (60072): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possi",
2026-01-09 01:43:08 (60072): Guest Log:  *** Listing of results directory ***
2026-01-09 01:43:08 (60072): Guest Log: total 4216
2026-01-09 01:43:08 (60072): Guest Log: -rwx------. 1 atlas atlas   36322 Jan  9 00:56 runpilot2-wrapper.sh
2026-01-09 01:43:08 (60072): Guest Log: -rw-r--r--. 1 atlas atlas  579449 Jan  9 00:57 pilot3.tar.gz
2026-01-09 01:43:08 (60072): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jan  9 00:57 queuedata.json
2026-01-09 01:43:08 (60072): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Jan  9 06:33 init_data.xml
2026-01-09 01:43:08 (60072): Guest Log: -rwxr-xr-x. 1 atlas atlas  592395 Jan  9 06:33 input.tar.gz
2026-01-09 01:43:08 (60072): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Jan  9 06:33 start_atlas.sh
2026-01-09 01:43:08 (60072): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jan  9 06:33 EVNT.47898824._001350.pool.root.1 -> /data/./ATLAS.root_0
2026-01-09 01:43:08 (60072): Guest Log: -rw-r--r--. 1 atlas atlas    2520 Jan  9 06:33 pandaJob.out
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas  989771 Jan  9 06:34 agis_schedconf.cvmfs.json
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas 1516240 Jan  9 06:34 agis_ddmendpoints.agis.ALL.json
2026-01-09 01:43:08 (60072): Guest Log: drwx------. 5 atlas atlas    4096 Jan  9 06:34 pilot3
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas    1013 Jan  9 06:39 memory_monitor_summary.json
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas  126352 Jan  9 06:39 log.47898826._034859.job.log.tgz.1
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas    9679 Jan  9 06:41 heartbeat.json
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas     744 Jan  9 06:41 pilotlog.txt
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas      95 Jan  9 06:41 pilot_heartbeat.json
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas  113351 Jan  9 06:41 log.47898826._034859.job.log.1
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas     188 Jan  9 06:41 output.list
2026-01-09 01:43:08 (60072): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jan  9 06:41 runtime_log
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas  256000 Jan  9 06:41 result.tar.gz
2026-01-09 01:43:08 (60072): Guest Log: -rw-------. 1 atlas atlas     641 Jan  9 06:41 W0fLDmEzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7klKDmQ9RNGm.diag
2026-01-09 01:43:08 (60072): Guest Log: -rw-r--r--. 1 atlas atlas    8587 Jan  9 06:41 runtime_log.err
2026-01-09 01:43:08 (60072): Guest Log: Looking for outputfile HITS.47898826._034859.pool.root.1
2026-01-09 01:43:08 (60072): Guest Log: No HITS file was produced
2026-01-09 01:43:08 (60072): Guest Log: Successfully finished the ATLAS job!
2026-01-09 01:43:08 (60072): Guest Log: Copying the results back to the shared directory!
2026-01-09 01:43:08 (60072): Guest Log:  *** Contents of shared directory: ***
2026-01-09 01:43:08 (60072): Guest Log: total 219632
2026-01-09 01:43:08 (60072): Guest Log: -rwxrwxrwx. 1 root root 224020505 Jan  9 06:33 ATLAS.root_0
2026-01-09 01:43:08 (60072): Guest Log: -rwxrwxrwx. 1 root root      9004 Jan  9 06:33 init_data.xml
2026-01-09 01:43:08 (60072): Guest Log: -rwxrwxrwx. 1 root root    592395 Jan  9 05:49 input.tar.gz
2026-01-09 01:43:08 (60072): Guest Log: -rwxrwxrwx. 1 root root    256000 Jan  9  2026 result.tar.gz
2026-01-09 01:43:08 (60072): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 05:49 start_atlas.sh
2026-01-09 01:43:08 (60072): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-09 01:43:08 (60072): VM Completion File Detected.
2026-01-09 01:43:08 (60072): Powering off VM.
2026-01-09 01:43:09 (60072): Successfully stopped VM.
2026-01-09 01:43:09 (60072): Deregistering VM. (boinc_5977c75ec76909d6, slot#1)
2026-01-09 01:43:09 (60072): Removing network bandwidth throttle group from VM.
2026-01-09 01:43:09 (60072): Removing VM from VirtualBox.
2026-01-09 01:43:14 (60072): called boinc_finish(0)

</stderr_txt>
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