Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:45:32 (2966928): wrapper (7.7.26015): starting
20:45:32 (2966928): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 20:45:32] Arguments: --nthreads 3
[2026-01-09 20:45:32] Threads: 3
[2026-01-09 20:45:32] Checking for CVMFS
[2026-01-09 20:45:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:45:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:45:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:45:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:45:32] 2.9.2.0 2438121 2105 84416 154955 3 57 20514485 36864001 0 130560 0 1398587 99.988 82435 4634 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 20:45:32] CVMFS is ok
[2026-01-09 20:45:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:45:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:45:32] Further information can be found at the LHC@home message board.
[2026-01-09 20:45:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:45:32] Checking for apptainer binary...
[2026-01-09 20:45:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:45:32] Running /usr/bin/apptainer --version
[2026-01-09 20:45:32] apptainer version 1.4.1-1.1
[2026-01-09 20:45:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:45:32] magicA252
[2026-01-09 20:45:32] apptainer works
[2026-01-09 20:45:32] Set ATHENA_PROC_NUMBER=3
[2026-01-09 20:45:32] Set ATHENA_CORE_NUMBER=3
[2026-01-09 20:45:32] Starting ATLAS job with PandaID=6963165964
[2026-01-09 20:45:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:41:51]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:41:51] 2026-01-09 21:41:07,677 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:41:51] 2026-01-09 21:41:07,677 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:41:51] 2026-01-09 21:41:07,677 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:41:51] 2026-01-09 21:41:07,677 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:41:51] 2026-01-09 21:41:07,677 | INFO     | job 6963165964 has completed (purged errors)
[2026-01-09 22:41:51] 2026-01-09 21:41:07,678 | INFO     | overall cleanup function is called
[2026-01-09 22:41:51] 2026-01-09 21:41:08,684 | INFO     | --- collectZombieJob: --- 10, [2977106]
[2026-01-09 22:41:51] 2026-01-09 21:41:08,684 | INFO     | zombie collector waiting for pid 2977106
[2026-01-09 22:41:51] 2026-01-09 21:41:08,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:41:51] 2026-01-09 21:41:08,685 | INFO     | collected zombie processes
[2026-01-09 22:41:51] 2026-01-09 21:41:08,685 | INFO     | will attempt to kill all subprocesses of pid=2977106
[2026-01-09 22:41:51] 2026-01-09 21:41:08,728 | INFO     | process IDs to be killed: [2977106] (in reverse order)
[2026-01-09 22:41:51] 2026-01-09 21:41:08,753 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:41:51] 2026-01-09 21:41:08,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:41:51] 2026-01-09 21:41:08,755 | INFO     | did not find any defunct processes belonging to 2977106
[2026-01-09 22:41:51] 2026-01-09 21:41:08,756 | INFO     | did not find any defunct processes belonging to 2977106
[2026-01-09 22:41:51] 2026-01-09 21:41:08,756 | INFO     | ready for new job
[2026-01-09 22:41:51] 2026-01-09 21:41:08,756 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:41:51] 2026-01-09 21:41:08,757 | INFO     | ***************************************
[2026-01-09 22:41:51] 2026-01-09 21:41:08,757 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:41:51] 2026-01-09 21:41:08,757 | INFO     | ***************************************
[2026-01-09 22:41:51] 2026-01-09 21:41:08,757 | INFO     | 
[2026-01-09 22:41:51] 2026-01-09 21:41:08,757 | INFO     | architecture information:
[2026-01-09 22:41:51] 2026-01-09 21:41:08,757 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:41:51] 2026-01-09 21:41:08,766 | INFO     | cat /etc/os-release:
[2026-01-09 22:41:51] NAME="CentOS Linux"
[2026-01-09 22:41:51] VERSION="7 (Core)"
[2026-01-09 22:41:51] ID="centos"
[2026-01-09 22:41:51] ID_LIKE="rhel fedora"
[2026-01-09 22:41:51] VERSION_ID="7"
[2026-01-09 22:41:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:41:51] ANSI_COLOR="0;31"
[2026-01-09 22:41:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:41:51] HOME_URL="https://www.centos.org/"
[2026-01-09 22:41:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:41:51] 
[2026-01-09 22:41:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:41:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:41:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:41:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:41:51] 
[2026-01-09 22:41:51] 2026-01-09 21:41:08,767 | INFO     | ***************************************
[2026-01-09 22:41:51] 2026-01-09 21:41:09,270 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 22:41:51] 2026-01-09 21:41:09,282 | INFO     | sufficient remaining disk space (384284229632 B)
[2026-01-09 22:41:51] 2026-01-09 21:41:09,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:41:51] 2026-01-09 21:41:09,282 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:41:51] 2026-01-09 21:41:09,282 | INFO     | update_server=False
[2026-01-09 22:41:51] 2026-01-09 21:41:09,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:41:51] 2026-01-09 21:41:09,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:41:51] 2026-01-09 21:41:09,282 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:41:51] 2026-01-09 21:41:09,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:41:51] 2026-01-09 21:41:09,391 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:41:51] 2026-01-09 21:41:09,391 | INFO     | aborting loop
[2026-01-09 22:41:51] 2026-01-09 21:41:09,927 | INFO     | all payload control threads have been joined
[2026-01-09 22:41:51] 2026-01-09 21:41:10,229 | INFO     | all data control threads have been joined
[2026-01-09 22:41:51] 2026-01-09 21:41:10,288 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:10,288 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:10,312 | INFO     | all job control threads have been joined
[2026-01-09 22:41:51] 2026-01-09 21:41:10,397 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:10,800 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:10,931 | INFO     | [payload] control thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,235 | INFO     | [data] control thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,288 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,314 | INFO     | [job] control thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,512 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,531 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,654 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,655 | INFO     | [job] validate thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,776 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:11,782 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:13,289 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:19,480 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:41:51] 2026-01-09 21:41:20,486 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:41:51] 2026-01-09 21:41:38,821 | INFO     | PID=2970653 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:41:51] 2026-01-09 21:41:38,821 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:41:51] 2026-01-09 21:41:38,821 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:41:51] 2026-01-09 21:41:38,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:41:51] 2026-01-09 21:41:46,588 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:41:51] 2026-01-09 21:41:46,700 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716777400128)>', '<ExcThread(monitor, started 139716150159104)>']
[2026-01-09 22:41:51] 2026-01-09 21:41:46,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:41:51] 2026-01-09 21:41:46,846 | INFO     | [monitor] control thread has ended
[2026-01-09 22:41:51] 2026-01-09 21:41:51,715 | INFO     | all workflow threads have been joined
[2026-01-09 22:41:51] 2026-01-09 21:41:51,715 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:41:51] 2026-01-09 21:41:51,715 | INFO     | traces error code: 0
[2026-01-09 22:41:51] 2026-01-09 21:41:51,715 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:41:51] 2026-01-09 21:41:51,764 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:41:51] 2026-01-09 21:41:51,767 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:41:51] 2026-01-09 21:41:51,769 [wrapper] pilotpid: 2970653
[2026-01-09 22:41:51] 2026-01-09 21:41:51,772 [wrapper] Pilot exit status: 0
[2026-01-09 22:41:51] 2026-01-09 21:41:51,779 [wrapper] pandaids: 6963165964
[2026-01-09 22:41:51] 2026-01-09 21:41:51,797 [wrapper] cleanup supervisor_pilot 2991490 2970654
[2026-01-09 22:41:51] 2026-01-09 21:41:51,799 [wrapper] Test setup, not cleaning
[2026-01-09 22:41:51] 2026-01-09 21:41:51,802 [wrapper] apfmon messages muted
[2026-01-09 22:41:51] 2026-01-09 21:41:51,804 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:41:51] 2026-01-09 21:41:51,807 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:41:51]  *** Error codes and diagnostics ***
[2026-01-09 22:41:51]     "exeErrorCode": 0,
[2026-01-09 22:41:51]     "exeErrorDiag": "",
[2026-01-09 22:41:51]     "pilotErrorCode": 0,
[2026-01-09 22:41:51]     "pilotErrorDiag": "",
[2026-01-09 22:41:51]  *** Listing of results directory ***
[2026-01-09 22:41:51] total 448356
[2026-01-09 22:41:51] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc       100 Jan  9 20:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:41:51] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 20:45 run_atlas
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc       105 Jan  9 20:45 job.xml
[2026-01-09 22:41:51] -rw-r--r-- 2 boinc boinc 224522922 Jan  9 20:45 EVNT.47898824._001359.pool.root.1
[2026-01-09 22:41:51] -rw-r--r-- 2 boinc boinc    592397 Jan  9 20:45 input.tar.gz
[2026-01-09 22:41:51] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:45 start_atlas.sh
[2026-01-09 22:41:51] drwxrwx--x 2 boinc boinc      4096 Jan  9 20:45 shared
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:45 boinc_setup_complete
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc      6448 Jan  9 20:45 init_data.xml
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc         0 Jan  9 20:45 boinc_lockfile
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc      2520 Jan  9 20:45 pandaJob.out
[2026-01-09 22:41:51] -rw------- 1 boinc boinc    989364 Jan  9 20:45 agis_schedconf.cvmfs.json
[2026-01-09 22:41:51] -rw------- 1 boinc boinc   1516240 Jan  9 20:45 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:41:51] drwx------ 5 boinc boinc      4096 Jan  9 20:45 pilot3
[2026-01-09 22:41:51] -rw------- 1 boinc boinc 228143849 Jan  9 22:40 HITS.47898826._035077.pool.root.1
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc       529 Jan  9 22:40 boinc_task_state.xml
[2026-01-09 22:41:51] -rw------- 1 boinc boinc      1015 Jan  9 22:40 memory_monitor_summary.json
[2026-01-09 22:41:51] -rw------- 1 boinc boinc    274474 Jan  9 22:41 log.47898826._035077.job.log.tgz.1
[2026-01-09 22:41:51] -rw------- 1 boinc boinc      7755 Jan  9 22:41 heartbeat.json
[2026-01-09 22:41:51] -rw------- 1 boinc boinc        95 Jan  9 22:41 pilot_heartbeat.json
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc      8192 Jan  9 22:41 boinc_mmap_file
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc        27 Jan  9 22:41 wrapper_checkpoint.txt
[2026-01-09 22:41:51] -rw------- 1 boinc boinc      4824 Jan  9 22:41 pilotlog.txt
[2026-01-09 22:41:51] -rw------- 1 boinc boinc    998923 Jan  9 22:41 log.47898826._035077.job.log.1
[2026-01-09 22:41:51] -rw------- 1 boinc boinc       357 Jan  9 22:41 output.list
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc       620 Jan  9 22:41 runtime_log
[2026-01-09 22:41:51] -rw------- 1 boinc boinc   1290240 Jan  9 22:41 result.tar.gz
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc      8912 Jan  9 22:41 runtime_log.err
[2026-01-09 22:41:51] -rw------- 1 boinc boinc       662 Jan  9 22:41 VXKNDmPzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmullKDmkNZtwn.diag
[2026-01-09 22:41:51] -rw-r--r-- 1 boinc boinc     11309 Jan  9 22:41 stderr.txt
[2026-01-09 22:41:51] HITS file was successfully produced:
[2026-01-09 22:41:51] -rw------- 1 boinc boinc 228143849 Jan  9 22:40 shared/HITS.pool.root.1
[2026-01-09 22:41:51]  *** Contents of shared directory: ***
[2026-01-09 22:41:51] total 443928
[2026-01-09 22:41:51] -rw-r--r-- 2 boinc boinc 224522922 Jan  9 20:45 ATLAS.root_0
[2026-01-09 22:41:51] -rw-r--r-- 2 boinc boinc    592397 Jan  9 20:45 input.tar.gz
[2026-01-09 22:41:51] -rw-r--r-- 2 boinc boinc     15847 Jan  9 20:45 start_atlas.sh
[2026-01-09 22:41:51] -rw------- 1 boinc boinc 228143849 Jan  9 22:40 HITS.pool.root.1
[2026-01-09 22:41:51] -rw------- 1 boinc boinc   1290240 Jan  9 22:41 result.tar.gz
22:41:53 (2966928): run_atlas exited; CPU time 20089.244723
22:41:53 (2966928): called boinc_finish(0)

</stderr_txt>
]]>

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