Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:08:20 (2260749): wrapper (7.7.26015): starting
22:08:20 (2260749): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 22:08:20] Arguments: --nthreads 12
[2026-01-08 22:08:20] Threads: 12
[2026-01-08 22:08:20] Checking for CVMFS
[2026-01-08 22:08:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 22:08:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 22:08:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 22:08:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 22:08:24] 2.11.5.0 394429 91047 217700 154933 0 467 39853518 45568000 17634 130560 0 516579847 99.755 366936190 20975 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-01-08 22:08:24] CVMFS is ok
[2026-01-08 22:08:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 22:08:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 22:08:24] Further information can be found at the LHC@home message board.
[2026-01-08 22:08:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 22:08:24] Checking for apptainer binary...
[2026-01-08 22:08:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 22:08:24] Running /usr/bin/apptainer --version
[2026-01-08 22:08:24] apptainer version 1.4.1-1.el9
[2026-01-08 22:08:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 22:08:26] wns0074.triumf.lcg
[2026-01-08 22:08:26] apptainer works
[2026-01-08 22:08:26] Set ATHENA_PROC_NUMBER=12
[2026-01-08 22:08:26] Set ATHENA_CORE_NUMBER=12
[2026-01-08 22:08:26] Starting ATLAS job with PandaID=6963163382
[2026-01-08 22:08:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 22:15:25]  *** The last 200 lines of the pilot log: ***
[2026-01-08 22:15:25] 2026-01-09 06:14:30,069 | WARNING  | wrong length of table data, x=[1767939082.0], y=[1488.0] (must be same and length>=4)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,069 | INFO     | could have reported an average CPU frequency of 1349 MHz (4 samples)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | ..............................
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . Timing measurements:
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . get job = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . initial setup = 4 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . payload setup = 34 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . stage-in = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . payload execution = 69 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | . stage-out = 1 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | . log creation = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | ..............................
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963163382/pilotlog.txt
[2026-01-08 22:15:25] 2026-01-09 06:14:30,157 | INFO     | time since job start (313s) is within the limit (349056.0s)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,196 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-08 22:15:25] - Log from pilotlog.txt -
[2026-01-08 22:15:25] 2026-01-09 06:14:30,059 | INFO     | extracted standard info from prmon json
[2026-01-08 22:15:25] 2026-01-09 06:14:30,059 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 22:15:25] 2026-01-09 06:14:30,059 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 22:15:25] 2026-01-09 06:14:30,068 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 22:15:25] 2026-01-09 06:14:30,068 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 22:15:25] 2026-01-09 06:14:30,069 | WARNING  | wrong length of table data, x=[1767939082.0], y=[1488.0] (must be same and length>=4)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,069 | INFO     | could have reported an average CPU frequency of 1349 MHz (4 samples)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | ..............................
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . Timing measurements:
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . get job = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . initial setup = 4 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . payload setup = 34 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . stage-in = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . payload execution = 69 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | . stage-out = 1 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | . log creation = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | ..............................
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963163382/pilotlog.txt
[2026-01-08 22:15:25] 2026-01-09 06:14:30,157 | INFO     | time since job start (313s) is within the limit (349056.0s)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,196 | WARNING  | 
[2026-01-08 22:15:25] [begin log extracts]
[2026-01-08 22:15:25] - Log from pilotlog.txt -
[2026-01-08 22:15:25] 2026-01-09 06:14:30,059 | INFO     | extracted standard info from prmon json
[2026-01-08 22:15:25] 2026-01-09 06:14:30,059 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 22:15:25] 2026-01-09 06:14:30,059 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 22:15:25] 2026-01-09 06:14:30,068 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 22:15:25] 2026-01-09 06:14:30,068 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 22:15:25] 2026-01-09 06:14:30,069 | WARNING  | wrong length of table data, x=[1767939082.0], y=[1488.0] (must be same and length>=4)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,069 | INFO     | could have reported an average CPU frequency of 1349 MHz (4 samples)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | ..............................
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . Timing measurements:
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . get job = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . initial setup = 4 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . payload setup = 34 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . stage-in = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,084 | INFO     | . payload execution = 69 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | . stage-out = 1 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | . log creation = 0 s
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | ..............................
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-08 22:15:25] 2026-01-09 06:14:30,085 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963163382/pilotlog.txt
[2026-01-08 22:15:25] 2026-01-09 06:14:30,157 | INFO     | time since job start (313s) is within the limit (349056.0s)
[2026-01-08 22:15:25] [end log extracts]
[2026-01-08 22:15:25] 2026-01-09 06:14:30,196 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-01-08 22:15:25] 2026-01-09 06:14:30,197 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-08 22:15:25] 2026-01-09 06:14:31,232 | INFO     | 
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | job summary report
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | --------------------------------------------------
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | PanDA job id: 6963163382
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | task id: 47898826
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-08 22:11:58,323 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | pilot state: failed 
[2026-01-08 22:15:25] 2026-01-09 06:14:31,234 | INFO     | transexitcode: 65
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | exeerrorcode: 65
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | exitcode: 65
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | cpuconsumptiontime: 31 s
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | nevents: 0
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | neventsw: 0
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | pid: 2282270
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | pgrp: 2282270
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | corecount: 12
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | event service: False
[2026-01-08 22:15:25] 2026-01-09 06:14:31,235 | INFO     | sizes: {0: 2283143, 1: 2283825, 2: 2284024, 13: 2284024, 24: 2284080, 29: 2284370, 35: 2284526, 107: 2307807, 110: 2312099, 111: 2312127, 249: 2312293}
[2026-01-08 22:15:25] 2026-01-09 06:14:31,236 | INFO     | --------------------------------------------------
[2026-01-08 22:15:25] 2026-01-09 06:14:31,274 | INFO     | 
[2026-01-08 22:15:25] 2026-01-09 06:14:31,274 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-08 22:15:25] 2026-01-09 06:14:31,446 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,447 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,447 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,447 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,447 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,448 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,448 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,448 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,448 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,448 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,448 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,448 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,449 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,449 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,449 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,449 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,449 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,449 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 22:15:25] 2026-01-09 06:14:31,449 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,457 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 22:15:25] 2026-01-09 06:14:31,457 | INFO     | job 6963163382 has completed (purged errors)
[2026-01-08 22:15:25] 2026-01-09 06:14:31,457 | INFO     | overall cleanup function is called
[2026-01-08 22:15:25] 2026-01-09 06:14:32,465 | INFO     | --- collectZombieJob: --- 10, [2282270]
[2026-01-08 22:15:25] 2026-01-09 06:14:32,465 | INFO     | zombie collector waiting for pid 2282270
[2026-01-08 22:15:25] 2026-01-09 06:14:32,465 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 22:15:25] 2026-01-09 06:14:32,465 | INFO     | collected zombie processes
[2026-01-08 22:15:25] 2026-01-09 06:14:32,465 | INFO     | will attempt to kill all subprocesses of pid=2282270
[2026-01-08 22:15:25] 2026-01-09 06:14:33,023 | INFO     | PID=2265726 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 22:15:25] 2026-01-09 06:14:33,023 | INFO     | .. there are 42 such processes running
[2026-01-08 22:15:25] 2026-01-09 06:14:33,641 | INFO     | process IDs to be killed: [2282270] (in reverse order)
[2026-01-08 22:15:25] 2026-01-09 06:14:33,792 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 22:15:25] 2026-01-09 06:14:33,793 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 22:15:25] 2026-01-09 06:14:33,837 | INFO     | did not find any defunct processes belonging to 2282270
[2026-01-08 22:15:25] 2026-01-09 06:14:33,861 | INFO     | did not find any defunct processes belonging to 2282270
[2026-01-08 22:15:25] 2026-01-09 06:14:33,861 | INFO     | ready for new job
[2026-01-08 22:15:25] 2026-01-09 06:14:33,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 22:15:25] 2026-01-09 06:14:33,863 | INFO     | ***************************************
[2026-01-08 22:15:25] 2026-01-09 06:14:33,863 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 22:15:25] 2026-01-09 06:14:33,863 | INFO     | ***************************************
[2026-01-08 22:15:25] 2026-01-09 06:14:33,863 | INFO     | 
[2026-01-08 22:15:25] 2026-01-09 06:14:33,867 | INFO     | architecture information:
[2026-01-08 22:15:25] 2026-01-09 06:14:33,867 | INFO     | executing command: cat /etc/os-release
[2026-01-08 22:15:25] 2026-01-09 06:14:33,887 | INFO     | cat /etc/os-release:
[2026-01-08 22:15:25] NAME="CentOS Linux"
[2026-01-08 22:15:25] VERSION="7 (Core)"
[2026-01-08 22:15:25] ID="centos"
[2026-01-08 22:15:25] ID_LIKE="rhel fedora"
[2026-01-08 22:15:25] VERSION_ID="7"
[2026-01-08 22:15:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 22:15:25] ANSI_COLOR="0;31"
[2026-01-08 22:15:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 22:15:25] HOME_URL="https://www.centos.org/"
[2026-01-08 22:15:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 22:15:25] 
[2026-01-08 22:15:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 22:15:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 22:15:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 22:15:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 22:15:25] 
[2026-01-08 22:15:25] 2026-01-09 06:14:33,887 | INFO     | ***************************************
[2026-01-08 22:15:25] 2026-01-09 06:14:34,391 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-08 22:15:25] 2026-01-09 06:14:34,418 | INFO     | sufficient remaining disk space (1616153411584 B)
[2026-01-08 22:15:25] 2026-01-09 06:14:34,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 22:15:25] 2026-01-09 06:14:34,419 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 22:15:25] 2026-01-09 06:14:34,419 | INFO     | update_server=False
[2026-01-08 22:15:25] 2026-01-09 06:14:34,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 22:15:25] 2026-01-09 06:14:34,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 22:15:25] 2026-01-09 06:14:34,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:15:25] 2026-01-09 06:14:34,851 | INFO     | aborting loop
[2026-01-08 22:15:25] 2026-01-09 06:14:34,924 | INFO     | all job control threads have been joined
[2026-01-08 22:15:25] 2026-01-09 06:14:35,008 | INFO     | all data control threads have been joined
[2026-01-08 22:15:25] 2026-01-09 06:14:35,425 | INFO     | [job] retrieve thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:35,467 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:35,518 | INFO     | [payload] failed_post thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:35,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 22:15:25] 2026-01-09 06:14:35,731 | INFO     | all payload control threads have been joined
[2026-01-08 22:15:25] 2026-01-09 06:14:35,857 | INFO     | [job] job monitor thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:35,932 | INFO     | [job] control thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,015 | INFO     | [data] control thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,248 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 22:15:25] 2026-01-09 06:14:36,319 | INFO     | [job] validate thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,467 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,471 | INFO     | [payload] validate_post thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,738 | INFO     | [payload] control thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,818 | INFO     | [data] copytool_in thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,921 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:36,929 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:37,255 | INFO     | [job] queue monitor thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:37,597 | INFO     | [data] copytool_out thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:14:38,437 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 22:15:25] 2026-01-09 06:15:05,950 | INFO     | PID=2265726 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 22:15:25] 2026-01-09 06:15:05,951 | INFO     | .. there are 42 such processes running
[2026-01-08 22:15:25] 2026-01-09 06:15:05,951 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 22:15:25] 2026-01-09 06:15:05,951 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 22:15:25] 2026-01-09 06:15:05,951 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 22:15:25] 2026-01-09 06:15:17,131 | INFO     | [monitor] cgroup control has ended
[2026-01-08 22:15:25] 2026-01-09 06:15:18,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003443398464)>', '<ExcThread(monitor, started 140002218460928)>']
[2026-01-08 22:15:25] 2026-01-09 06:15:19,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 22:15:25] 2026-01-09 06:15:19,040 | INFO     | [monitor] control thread has ended
[2026-01-08 22:15:25] 2026-01-09 06:15:23,797 | INFO     | all workflow threads have been joined
[2026-01-08 22:15:25] 2026-01-09 06:15:23,798 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 22:15:25] 2026-01-09 06:15:23,798 | INFO     | traces error code: 0
[2026-01-08 22:15:25] 2026-01-09 06:15:23,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 22:15:25] 2026-01-09 06:15:24,443 [wrapper] ==== pilot stdout END ====
[2026-01-08 22:15:25] 2026-01-09 06:15:24,454 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 22:15:25] 2026-01-09 06:15:24,457 [wrapper] pilotpid: 2265726
[2026-01-08 22:15:25] 2026-01-09 06:15:24,460 [wrapper] Pilot exit status: 0
[2026-01-08 22:15:25] 2026-01-09 06:15:24,509 [wrapper] pandaids: 6963163382
[2026-01-08 22:15:25] 2026-01-09 06:15:24,713 [wrapper] cleanup supervisor_pilot 2265732 2265727
[2026-01-08 22:15:25] 2026-01-09 06:15:24,725 [wrapper] Test setup, not cleaning
[2026-01-08 22:15:25] 2026-01-09 06:15:24,757 [wrapper] apfmon messages muted
[2026-01-08 22:15:25] 2026-01-09 06:15:24,761 [wrapper] ==== wrapper stdout END ====
[2026-01-08 22:15:25] 2026-01-09 06:15:24,783 [wrapper] ==== wrapper stderr END ====
[2026-01-08 22:15:25]  *** Error codes and diagnostics ***
[2026-01-08 22:15:25]     "exeErrorCode": 65,
[2026-01-08 22:15:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-01-08 22:15:25]     "pilotErrorCode": 1305,
[2026-01-08 22:15:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-01-08 22:15:25]  *** Listing of results directory ***
[2026-01-08 22:15:25] total 224144
[2026-01-08 22:15:25] -rwx------. 1 boinc boinc     36322 Jan  8 16:56 runpilot2-wrapper.sh
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc      5112 Jan  8 16:56 queuedata.json
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc    579449 Jan  8 16:57 pilot3.tar.gz
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc       100 Jan  8 22:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 22:15:25] -rwxr-xr-x. 1 boinc boinc      7986 Jan  8 22:08 run_atlas
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc       105 Jan  8 22:08 job.xml
[2026-01-08 22:15:25] -rw-r--r--. 2 boinc boinc 225366581 Jan  8 22:08 EVNT.47898824._001320.pool.root.1
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc      6594 Jan  8 22:08 init_data.xml
[2026-01-08 22:15:25] -rw-r--r--. 2 boinc boinc     15847 Jan  8 22:08 start_atlas.sh
[2026-01-08 22:15:25] drwxrwx--x. 2 boinc boinc      4096 Jan  8 22:08 shared
[2026-01-08 22:15:25] -rw-r--r--. 2 boinc boinc    592400 Jan  8 22:08 input.tar.gz
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc         0 Jan  8 22:08 boinc_lockfile
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc      2520 Jan  8 22:08 pandaJob.out
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc    989771 Jan  8 22:09 agis_schedconf.cvmfs.json
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc   1516240 Jan  8 22:09 agis_ddmendpoints.agis.ALL.json
[2026-01-08 22:15:25] drwx------. 5 boinc boinc      4096 Jan  8 22:09 pilot3
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc       987 Jan  8 22:12 memory_monitor_summary.json
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc     22793 Jan  8 22:12 log.47898826._034609.job.log.tgz.1
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc        95 Jan  8 22:14 pilot_heartbeat.json
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc      8421 Jan  8 22:14 heartbeat.json
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc        23 Jan  8 22:15 wrapper_checkpoint.txt
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc      8192 Jan  8 22:15 boinc_mmap_file
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc       524 Jan  8 22:15 boinc_task_state.xml
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc      4823 Jan  8 22:15 pilotlog.txt
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc     96370 Jan  8 22:15 log.47898826._034609.job.log.1
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc       188 Jan  8 22:15 output.list
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc       620 Jan  8 22:15 runtime_log
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc    143360 Jan  8 22:15 result.tar.gz
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc      8636 Jan  8 22:15 runtime_log.err
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc       643 Jan  8 22:15 gajMDm1yFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyjlKDmBciomn.diag
[2026-01-08 22:15:25] -rw-r--r--. 1 boinc boinc     21892 Jan  8 22:15 stderr.txt
[2026-01-08 22:15:25] No HITS result produced
[2026-01-08 22:15:25]  *** Contents of shared directory: ***
[2026-01-08 22:15:25] total 220828
[2026-01-08 22:15:25] -rw-r--r--. 2 boinc boinc 225366581 Jan  8 22:08 ATLAS.root_0
[2026-01-08 22:15:25] -rw-r--r--. 2 boinc boinc     15847 Jan  8 22:08 start_atlas.sh
[2026-01-08 22:15:25] -rw-r--r--. 2 boinc boinc    592400 Jan  8 22:08 input.tar.gz
[2026-01-08 22:15:25] -rw-------. 1 boinc boinc    143360 Jan  8 22:15 result.tar.gz
22:15:26 (2260749): run_atlas exited; CPU time 45.652396
22:15:26 (2260749): called boinc_finish(0)

</stderr_txt>
]]>

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