Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:33:37 (587): wrapper (7.7.26015): starting
00:33:37 (587): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 00:33:37] Arguments: --nthreads 8
[2026-01-09 00:33:37] Threads: 8
[2026-01-09 00:33:37] Checking for CVMFS
[2026-01-09 00:33:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:33:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:33:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:33:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:33:37] 2.11.2.0 4697 180610 138420 154933 3 188 16409182 18432000 1824 130560 0 121233901 99.979 7051225 34185 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:33:37] CVMFS is ok
[2026-01-09 00:33:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:33:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:33:37] Further information can be found at the LHC@home message board.
[2026-01-09 00:33:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:33:37] Checking for apptainer binary...
[2026-01-09 00:33:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:33:37] Running /usr/bin/apptainer --version
[2026-01-09 00:33:37] apptainer version 1.3.2-1.el7
[2026-01-09 00:33:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:33:38] c-206-21.aglt2.org
[2026-01-09 00:33:38] apptainer works
[2026-01-09 00:33:38] Set ATHENA_PROC_NUMBER=8
[2026-01-09 00:33:38] Set ATHENA_CORE_NUMBER=8
[2026-01-09 00:33:38] Starting ATLAS job with PandaID=6963163256
[2026-01-09 00:33:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:12:09 (10379): wrapper (7.7.26015): starting
05:12:09 (10379): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 05:12:09] Arguments: --nthreads 8
[2026-01-09 05:12:09] Threads: 8
[2026-01-09 05:12:09] This job has been restarted, cleaning up previous attempt
[2026-01-09 05:12:09] Checking for CVMFS
[2026-01-09 05:12:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:12:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:12:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:12:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:12:09] 2.11.2.0 4697 180888 135832 154938 1 188 16432750 18432001 1 130560 0 121569055 99.979 7058019 34187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 05:12:09] CVMFS is ok
[2026-01-09 05:12:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 05:12:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 05:12:09] Further information can be found at the LHC@home message board.
[2026-01-09 05:12:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:12:09] Checking for apptainer binary...
[2026-01-09 05:12:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:12:09] Running /usr/bin/apptainer --version
[2026-01-09 05:12:09] apptainer version 1.3.2-1.el7
[2026-01-09 05:12:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:12:10] c-206-21.aglt2.org
[2026-01-09 05:12:10] apptainer works
[2026-01-09 05:12:10] Set ATHENA_PROC_NUMBER=8
[2026-01-09 05:12:10] Set ATHENA_CORE_NUMBER=8
[2026-01-09 05:12:10] Starting ATLAS job with PandaID=6963163256
[2026-01-09 05:12:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:44:56]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:44:56] 2026-01-09 14:43:49,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,391 | INFO     | time since job start (16288s) is within the limit (349056.0s)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,463 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 09:44:56] 2026-01-09 14:43:50,469 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 1645.9166666666667
[2026-01-09 09:44:56] 2026-01-09 14:43:50,474 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963163256/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,474 | INFO     | extracted standard info from prmon json
[2026-01-09 09:44:56] 2026-01-09 14:43:50,474 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:44:56] 2026-01-09 14:43:50,474 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:44:56] 2026-01-09 14:43:50,475 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:44:56] 2026-01-09 14:43:50,475 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:44:56] 2026-01-09 14:43:50,479 | INFO     | fitting pss+swap vs Time
[2026-01-09 09:44:56] 2026-01-09 14:43:50,479 | INFO     | sum of square deviations: 5902093918.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,481 | INFO     | sum of deviations: 31332218852.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,481 | INFO     | mean x: 1767961682.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,481 | INFO     | mean y: 2464758.3146067415
[2026-01-09 09:44:56] 2026-01-09 14:43:50,482 | INFO     | intersect: -9383045386.387571
[2026-01-09 09:44:56] 2026-01-09 14:43:50,482 | INFO     | chi2: 2.031742510673446
[2026-01-09 09:44:56] 2026-01-09 14:43:50,482 | INFO     | sum of square deviations: 5576683165.5
[2026-01-09 09:44:56] 2026-01-09 14:43:50,484 | INFO     | sum of deviations: 48170891993.99999
[2026-01-09 09:44:56] 2026-01-09 14:43:50,484 | INFO     | mean x: 1767961529.5
[2026-01-09 09:44:56] 2026-01-09 14:43:50,484 | INFO     | mean y: 2472523.854961832
[2026-01-09 09:44:56] 2026-01-09 14:43:50,484 | INFO     | intersect: -15269021545.228626
[2026-01-09 09:44:56] 2026-01-09 14:43:50,485 | INFO     | chi2: 1.246883392665904
[2026-01-09 09:44:56] 2026-01-09 14:43:50,485 | INFO     | current chi2=1.246883392665904 (change=38.62985166104493 %)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,485 | INFO     | sum of square deviations: 5263458688.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,487 | INFO     | sum of deviations: 47081303223.00001
[2026-01-09 09:44:56] 2026-01-09 14:43:50,487 | INFO     | mean x: 1767961377.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,487 | INFO     | mean y: 2471993.3073929963
[2026-01-09 09:44:56] 2026-01-09 14:43:50,487 | INFO     | intersect: -15811830086.589476
[2026-01-09 09:44:56] 2026-01-09 14:43:50,487 | INFO     | chi2: 1.2469546898204142
[2026-01-09 09:44:56] 2026-01-09 14:43:50,488 | INFO     | current chi2=1.2469546898204142 (change=-0.005718029041819739 %)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,488 | INFO     | right removable region: 256
[2026-01-09 09:44:56] 2026-01-09 14:43:50,488 | INFO     | sum of square deviations: 5576683165.5
[2026-01-09 09:44:56] 2026-01-09 14:43:50,490 | INFO     | sum of deviations: -4858963082.500004
[2026-01-09 09:44:56] 2026-01-09 14:43:50,490 | INFO     | mean x: 1767961834.5
[2026-01-09 09:44:56] 2026-01-09 14:43:50,490 | INFO     | mean y: 2481575.9961832063
[2026-01-09 09:44:56] 2026-01-09 14:43:50,490 | INFO     | intersect: 1542906418.1764128
[2026-01-09 09:44:56] 2026-01-09 14:43:50,490 | INFO     | chi2: 0.8236573029216757
[2026-01-09 09:44:56] 2026-01-09 14:43:50,491 | INFO     | current chi2=0.8236573029216757 (change=59.46054686581991 %)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,491 | INFO     | sum of square deviations: 5263458688.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,493 | INFO     | sum of deviations: -9908985546.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,493 | INFO     | mean x: 1767961987.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,493 | INFO     | mean y: 2484015.9649805445
[2026-01-09 09:44:56] 2026-01-09 14:43:50,493 | INFO     | intersect: 3330848654.7909327
[2026-01-09 09:44:56] 2026-01-09 14:43:50,493 | INFO     | chi2: 0.7996893731901006
[2026-01-09 09:44:56] 2026-01-09 14:43:50,493 | INFO     | current chi2=0.7996893731901006 (change=2.9099395642527703 %)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,494 | INFO     | left removable region: 20
[2026-01-09 09:44:56] 2026-01-09 14:43:50,494 | INFO     | sum of square deviations: 4075741535.0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,495 | INFO     | sum of deviations: 3685499067.5
[2026-01-09 09:44:56] 2026-01-09 14:43:50,495 | INFO     | mean x: 1767961956.5
[2026-01-09 09:44:56] 2026-01-09 14:43:50,495 | INFO     | mean y: 2494000.970338983
[2026-01-09 09:44:56] 2026-01-09 14:43:50,496 | INFO     | intersect: -1596189842.473189
[2026-01-09 09:44:56] 2026-01-09 14:43:50,496 | INFO     | chi2: 0.00047250103254152493
[2026-01-09 09:44:56] 2026-01-09 14:43:50,496 | INFO     | current memory leak: 0.90 B/s (using 236 data points, chi2=0.00)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,496 | INFO     | could have reported an average CPU frequency of 2355 MHz (12 samples)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | ..............................
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . Timing measurements:
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . get job = 0 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . initial setup = 1 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . payload setup = 6 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . stage-in = 0 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . payload execution = 16252 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . stage-out = 2 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,497 | INFO     | . log creation = 0 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,498 | INFO     | ..............................
[2026-01-09 09:44:56] 2026-01-09 14:43:50,810 | INFO     | 
[2026-01-09 09:44:56] 2026-01-09 14:43:50,810 | INFO     | job summary report
[2026-01-09 09:44:56] 2026-01-09 14:43:50,810 | INFO     | --------------------------------------------------
[2026-01-09 09:44:56] 2026-01-09 14:43:50,811 | INFO     | PanDA job id: 6963163256
[2026-01-09 09:44:56] 2026-01-09 14:43:50,811 | INFO     | task id: 47898826
[2026-01-09 09:44:56] 2026-01-09 14:43:50,811 | INFO     | errors: (none)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,811 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:44:56] 2026-01-09 14:43:50,811 | INFO     | pilot state: finished 
[2026-01-09 09:44:56] 2026-01-09 14:43:50,811 | INFO     | transexitcode: 0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,812 | INFO     | exeerrorcode: 0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,812 | INFO     | exeerrordiag: 
[2026-01-09 09:44:56] 2026-01-09 14:43:50,812 | INFO     | exitcode: 0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,812 | INFO     | exitmsg: OK
[2026-01-09 09:44:56] 2026-01-09 14:43:50,812 | INFO     | cpuconsumptiontime: 124716 s
[2026-01-09 09:44:56] 2026-01-09 14:43:50,812 | INFO     | nevents: 400
[2026-01-09 09:44:56] 2026-01-09 14:43:50,813 | INFO     | neventsw: 0
[2026-01-09 09:44:56] 2026-01-09 14:43:50,813 | INFO     | pid: 8149
[2026-01-09 09:44:56] 2026-01-09 14:43:50,813 | INFO     | pgrp: 8149
[2026-01-09 09:44:56] 2026-01-09 14:43:50,813 | INFO     | corecount: 8
[2026-01-09 09:44:56] 2026-01-09 14:43:50,813 | INFO     | event service: False
[2026-01-09 09:44:56] 2026-01-09 14:43:50,813 | INFO     | sizes: {0: 2283971, 1: 2283971, 5: 2284261, 11: 2284317, 16262: 2315721, 16265: 2324903, 16273: 2325041}
[2026-01-09 09:44:56] 2026-01-09 14:43:50,814 | INFO     | --------------------------------------------------
[2026-01-09 09:44:56] 2026-01-09 14:43:50,814 | INFO     | 
[2026-01-09 09:44:56] 2026-01-09 14:43:50,814 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 09:44:56] 2026-01-09 14:43:50,838 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,839 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,839 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,839 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,839 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,839 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,839 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,839 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,840 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,840 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,840 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,840 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,841 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,841 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,841 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,841 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:44:56] 2026-01-09 14:43:50,842 | INFO     | job 6963163256 has completed (purged errors)
[2026-01-09 09:44:56] 2026-01-09 14:43:50,842 | INFO     | overall cleanup function is called
[2026-01-09 09:44:56] 2026-01-09 14:43:51,846 | INFO     | --- collectZombieJob: --- 10, [8149]
[2026-01-09 09:44:56] 2026-01-09 14:43:51,847 | INFO     | zombie collector waiting for pid 8149
[2026-01-09 09:44:56] 2026-01-09 14:43:51,847 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:44:56] 2026-01-09 14:43:51,847 | INFO     | collected zombie processes
[2026-01-09 09:44:56] 2026-01-09 14:43:51,847 | INFO     | will attempt to kill all subprocesses of pid=8149
[2026-01-09 09:44:56] 2026-01-09 14:43:51,955 | INFO     | process IDs to be killed: [8149] (in reverse order)
[2026-01-09 09:44:56] 2026-01-09 14:43:52,004 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:44:56] 2026-01-09 14:43:52,005 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:44:56] 2026-01-09 14:43:52,009 | INFO     | did not find any defunct processes belonging to 8149
[2026-01-09 09:44:56] 2026-01-09 14:43:52,012 | INFO     | did not find any defunct processes belonging to 8149
[2026-01-09 09:44:56] 2026-01-09 14:43:52,013 | INFO     | ready for new job
[2026-01-09 09:44:56] 2026-01-09 14:43:52,013 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:44:56] 2026-01-09 14:43:52,015 | INFO     | ***************************************
[2026-01-09 09:44:56] 2026-01-09 14:43:52,015 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:44:56] 2026-01-09 14:43:52,015 | INFO     | ***************************************
[2026-01-09 09:44:56] 2026-01-09 14:43:52,015 | INFO     | 
[2026-01-09 09:44:56] 2026-01-09 14:43:52,016 | INFO     | architecture information:
[2026-01-09 09:44:56] 2026-01-09 14:43:52,016 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:44:56] 2026-01-09 14:43:52,031 | INFO     | cat /etc/os-release:
[2026-01-09 09:44:56] NAME="CentOS Linux"
[2026-01-09 09:44:56] VERSION="7 (Core)"
[2026-01-09 09:44:56] ID="centos"
[2026-01-09 09:44:56] ID_LIKE="rhel fedora"
[2026-01-09 09:44:56] VERSION_ID="7"
[2026-01-09 09:44:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:44:56] ANSI_COLOR="0;31"
[2026-01-09 09:44:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:44:56] HOME_URL="https://www.centos.org/"
[2026-01-09 09:44:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:44:56] 
[2026-01-09 09:44:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:44:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:44:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:44:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:44:56] 
[2026-01-09 09:44:56] 2026-01-09 14:43:52,031 | INFO     | ***************************************
[2026-01-09 09:44:56] 2026-01-09 14:43:52,534 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 09:44:56] 2026-01-09 14:43:52,551 | INFO     | sufficient remaining disk space (28783411200 B)
[2026-01-09 09:44:56] 2026-01-09 14:43:52,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:44:56] 2026-01-09 14:43:52,551 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:44:56] 2026-01-09 14:43:52,551 | INFO     | update_server=False
[2026-01-09 09:44:56] 2026-01-09 14:43:52,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:44:56] 2026-01-09 14:43:52,552 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:44:56] 2026-01-09 14:43:52,633 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:44:56] 2026-01-09 14:43:52,633 | INFO     | aborting loop
[2026-01-09 09:44:56] 2026-01-09 14:43:52,683 | INFO     | all payload control threads have been joined
[2026-01-09 09:44:56] 2026-01-09 14:43:52,792 | INFO     | all data control threads have been joined
[2026-01-09 09:44:56] 2026-01-09 14:43:53,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:44:56] 2026-01-09 14:43:53,280 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:44:56] 2026-01-09 14:43:53,557 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:53,558 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:53,575 | INFO     | all job control threads have been joined
[2026-01-09 09:44:56] 2026-01-09 14:43:53,583 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:53,639 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:53,689 | INFO     | [payload] control thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:53,797 | INFO     | [data] control thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:54,137 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:54,305 | INFO     | [job] validate thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:54,581 | INFO     | [job] control thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:54,660 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:54,812 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:54,998 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:55,124 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:55,209 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:43:57,286 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:44:03,349 | INFO     | job.realtimelogging is not enabled
[2026-01-09 09:44:56] 2026-01-09 14:44:04,355 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:44:56] 2026-01-09 14:44:23,618 | INFO     | PID=21476 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 09:44:56] 2026-01-09 14:44:23,618 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:44:56] 2026-01-09 14:44:23,618 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:44:56] 2026-01-09 14:44:23,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:44:56] 2026-01-09 14:44:49,396 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:44:56] 2026-01-09 14:44:51,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140059728758592)>', '<ExcThread(monitor, started 140059084846848)>']
[2026-01-09 09:44:56] 2026-01-09 14:44:51,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:44:56] 2026-01-09 14:44:51,755 | INFO     | [monitor] control thread has ended
[2026-01-09 09:44:56] 2026-01-09 14:44:56,062 | INFO     | all workflow threads have been joined
[2026-01-09 09:44:56] 2026-01-09 14:44:56,062 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:44:56] 2026-01-09 14:44:56,063 | INFO     | traces error code: 0
[2026-01-09 09:44:56] 2026-01-09 14:44:56,063 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:44:56] 2026-01-09 14:44:56,154 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:44:56] 2026-01-09 14:44:56,158 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:44:56] 2026-01-09 14:44:56,162 [wrapper] pilotpid: 21476
[2026-01-09 09:44:56] 2026-01-09 14:44:56,166 [wrapper] Pilot exit status: 0
[2026-01-09 09:44:56] 2026-01-09 14:44:56,180 [wrapper] pandaids: 6963163256 6963163256
[2026-01-09 09:44:56] 2026-01-09 14:44:56,229 [wrapper] cleanup supervisor_pilot 11515 21478
[2026-01-09 09:44:56] 2026-01-09 14:44:56,233 [wrapper] Test setup, not cleaning
[2026-01-09 09:44:56] 2026-01-09 14:44:56,237 [wrapper] apfmon messages muted
[2026-01-09 09:44:56] 2026-01-09 14:44:56,241 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:44:56] 2026-01-09 14:44:56,244 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:44:56]  *** Error codes and diagnostics ***
[2026-01-09 09:44:56]     "exeErrorCode": 0,
[2026-01-09 09:44:56]     "exeErrorDiag": "",
[2026-01-09 09:44:56]     "pilotErrorCode": 0,
[2026-01-09 09:44:56]     "pilotErrorDiag": "",
[2026-01-09 09:44:56]  *** Listing of results directory ***
[2026-01-09 09:44:56] total 667744
[2026-01-09 09:44:56] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 09:44:56] -rwx------ 1 boincer umatlas     36322 Jan  8 19:56 runpilot2-wrapper.sh
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 19:56 queuedata.json
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 19:57 pilot3.tar.gz
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas       100 Jan  9 00:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:44:56] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 00:33 run_atlas
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas       105 Jan  9 00:33 job.xml
[2026-01-09 09:44:56] -rw-r--r-- 3 boincer umatlas 225718190 Jan  9 00:33 EVNT.47898824._001315.pool.root.1
[2026-01-09 09:44:56] -rw-r--r-- 3 boincer umatlas 225718190 Jan  9 00:33 ATLAS.root_0
[2026-01-09 09:44:56] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:33 start_atlas.sh
[2026-01-09 09:44:56] drwxrwx--x 2 boincer umatlas      4096 Jan  9 00:33 shared
[2026-01-09 09:44:56] -rw-r--r-- 2 boincer umatlas    592395 Jan  9 00:33 input.tar.gz
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas         0 Jan  9 00:33 boinc_lockfile
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 05:12 pandaJob.out
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas        57 Jan  9 05:12 setup.sh.local
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas    989751 Jan  9 05:12 agis_schedconf.cvmfs.json
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas      5953 Jan  9 09:39 init_data.xml
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas 222932792 Jan  9 09:43 HITS.47898826._034483.pool.root.1
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas       533 Jan  9 09:43 boinc_task_state.xml
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas        96 Jan  9 09:43 pilot_heartbeat.json
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas      1050 Jan  9 09:43 memory_monitor_summary.json
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas   1516240 Jan  9 09:43 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas    488670 Jan  9 09:43 log.47898826._034483.job.log.tgz.1
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas      7856 Jan  9 09:43 heartbeat.json
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 09:44 boinc_mmap_file
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas        29 Jan  9 09:44 wrapper_checkpoint.txt
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas      4818 Jan  9 09:44 pilotlog.txt
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas   2254340 Jan  9 09:44 log.47898826._034483.job.log.1
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas       357 Jan  9 09:44 output.list
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas       620 Jan  9 09:44 runtime_log
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas   2764800 Jan  9 09:44 result.tar.gz
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas       787 Jan  9 09:44 xVmKDm1yFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm0ilKDmQAAONm.diag
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas      9428 Jan  9 09:44 runtime_log.err
[2026-01-09 09:44:56] -rw-r--r-- 1 boincer umatlas     23221 Jan  9 09:44 stderr.txt
[2026-01-09 09:44:56] HITS file was successfully produced:
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas 222932792 Jan  9 09:43 shared/HITS.pool.root.1
[2026-01-09 09:44:56]  *** Contents of shared directory: ***
[2026-01-09 09:44:56] total 441436
[2026-01-09 09:44:56] -rw-r--r-- 3 boincer umatlas 225718190 Jan  9 00:33 ATLAS.root_0
[2026-01-09 09:44:56] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:33 start_atlas.sh
[2026-01-09 09:44:56] -rw-r--r-- 2 boincer umatlas    592395 Jan  9 00:33 input.tar.gz
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas 222932792 Jan  9 09:43 HITS.pool.root.1
[2026-01-09 09:44:56] -rw------- 1 boincer umatlas   2764800 Jan  9 09:44 result.tar.gz
09:44:58 (10379): run_atlas exited; CPU time 124937.746390
09:44:58 (10379): called boinc_finish(0)

</stderr_txt>
]]>

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