Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:32:01 (747747): wrapper (7.7.26015): starting
13:32:01 (747747): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 13:32:01] Arguments: --nthreads 3
[2026-01-09 13:32:01] Threads: 3
[2026-01-09 13:32:01] Checking for CVMFS
[2026-01-09 13:32:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:32:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:32:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:32:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:32:01] 2.9.2.0 187979 2362 75412 154942 3 57 23408015 36864001 0 130560 0 1438069 99.987 88062 5231 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 13:32:01] CVMFS is ok
[2026-01-09 13:32:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:32:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:32:01] Further information can be found at the LHC@home message board.
[2026-01-09 13:32:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:32:01] Checking for apptainer binary...
[2026-01-09 13:32:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:32:01] Running /usr/bin/apptainer --version
[2026-01-09 13:32:01] apptainer version 1.4.1-1.1
[2026-01-09 13:32:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:32:01] atlasA223
[2026-01-09 13:32:01] apptainer works
[2026-01-09 13:32:01] Set ATHENA_PROC_NUMBER=3
[2026-01-09 13:32:01] Set ATHENA_CORE_NUMBER=3
[2026-01-09 13:32:01] Starting ATLAS job with PandaID=6963155264
[2026-01-09 13:32:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 15:30:21]  *** The last 200 lines of the pilot log: ***
[2026-01-09 15:30:21] 2026-01-09 14:29:20,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 15:30:21] 2026-01-09 14:29:20,212 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 15:30:21] 2026-01-09 14:29:20,212 | INFO     | aborting loop
[2026-01-09 15:30:21] 2026-01-09 14:29:20,544 | INFO     | all payload control threads have been joined
[2026-01-09 15:30:21] 2026-01-09 14:29:20,590 | INFO     | [job] retrieve thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:20,590 | INFO     | [job] queue monitor thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:20,644 | INFO     | [job] control thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:20,688 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:20,732 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:20,873 | INFO     | [data] control thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,112 | INFO     | [data] copytool_in thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,160 | INFO     | [payload] validate_post thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,217 | INFO     | [job] job monitor thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,549 | INFO     | [payload] control thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,558 | INFO     | [job] validate thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,591 | INFO     | [data] copytool_out thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,726 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,759 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:21,979 | INFO     | [payload] failed_post thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:24,114 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 15:30:21] 2026-01-09 14:29:50,081 | INFO     | PID=751465 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 15:30:21] 2026-01-09 14:29:50,081 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 15:30:21] 2026-01-09 14:29:50,081 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 15:30:21] 2026-01-09 14:29:50,081 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 15:30:21] 2026-01-09 14:30:15,062 | INFO     | [monitor] cgroup control has ended
[2026-01-09 15:30:21] 2026-01-09 14:30:16,164 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140092052289344)>', '<ExcThread(monitor, started 140091779421952)>']
[2026-01-09 15:30:21] 2026-01-09 14:30:16,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 15:30:21] 2026-01-09 14:30:16,220 | INFO     | [monitor] control thread has ended
[2026-01-09 15:30:21] 2026-01-09 14:30:21,188 | INFO     | all workflow threads have been joined
[2026-01-09 15:30:21] 2026-01-09 14:30:21,188 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 15:30:21] 2026-01-09 14:30:21,189 | INFO     | traces error code: 0
[2026-01-09 15:30:21] 2026-01-09 14:30:21,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 15:30:21] 2026-01-09 14:30:21,239 [wrapper] ==== pilot stdout END ====
[2026-01-09 15:30:21] 2026-01-09 14:30:21,242 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 15:30:21] 2026-01-09 14:30:21,244 [wrapper] pilotpid: 751465
[2026-01-09 15:30:21] 2026-01-09 14:30:21,246 [wrapper] Pilot exit status: 0
[2026-01-09 15:30:21] 2026-01-09 14:30:21,253 [wrapper] pandaids: 6963155264
[2026-01-09 15:30:21] 2026-01-09 14:30:21,271 [wrapper] cleanup supervisor_pilot  772333 751466
[2026-01-09 15:30:21] 2026-01-09 14:30:21,273 [wrapper] Test setup, not cleaning
[2026-01-09 15:30:21] 2026-01-09 14:30:21,276 [wrapper] apfmon messages muted
[2026-01-09 15:30:21] 2026-01-09 14:30:21,278 [wrapper] ==== wrapper stdout END ====
[2026-01-09 15:30:21] 2026-01-09 14:30:21,280 [wrapper] ==== wrapper stderr END ====
[2026-01-09 15:30:21]  *** Error codes and diagnostics ***
[2026-01-09 15:30:21]     "exeErrorCode": 0,
[2026-01-09 15:30:21]     "exeErrorDiag": "",
[2026-01-09 15:30:21]     "pilotErrorCode": 0,
[2026-01-09 15:30:21]     "pilotErrorDiag": "",
[2026-01-09 15:30:21]  *** Listing of results directory ***
[2026-01-09 15:30:21] total 443548
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 15:30:21] -rwx------ 1 boinc boinc     36322 Jan  8 20:06 runpilot2-wrapper.sh
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:07 queuedata.json
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc       100 Jan  9 13:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 15:30:21] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 13:32 run_atlas
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc       105 Jan  9 13:32 job.xml
[2026-01-09 15:30:21] -rw-r--r-- 2 boinc boinc 224015239 Jan  9 13:32 EVNT.47898824._001181.pool.root.1
[2026-01-09 15:30:21] drwxrwx--x 2 boinc boinc      4096 Jan  9 13:32 shared
[2026-01-09 15:30:21] -rw-r--r-- 2 boinc boinc    592396 Jan  9 13:32 input.tar.gz
[2026-01-09 15:30:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:32 start_atlas.sh
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:32 boinc_setup_complete
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc      6446 Jan  9 13:32 init_data.xml
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:32 boinc_lockfile
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc      2519 Jan  9 13:32 pandaJob.out
[2026-01-09 15:30:21] -rw------- 1 boinc boinc    989377 Jan  9 13:32 agis_schedconf.cvmfs.json
[2026-01-09 15:30:21] -rw------- 1 boinc boinc   1516240 Jan  9 13:32 agis_ddmendpoints.agis.ALL.json
[2026-01-09 15:30:21] drwx------ 5 boinc boinc      4096 Jan  9 13:32 pilot3
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc       529 Jan  9 15:28 boinc_task_state.xml
[2026-01-09 15:30:21] -rw------- 1 boinc boinc 223676066 Jan  9 15:28 HITS.47898826._030514.pool.root.1
[2026-01-09 15:30:21] -rw------- 1 boinc boinc      1026 Jan  9 15:29 memory_monitor_summary.json
[2026-01-09 15:30:21] -rw------- 1 boinc boinc    288935 Jan  9 15:29 log.47898826._030514.job.log.tgz.1
[2026-01-09 15:30:21] -rw------- 1 boinc boinc      7748 Jan  9 15:29 heartbeat.json
[2026-01-09 15:30:21] -rw------- 1 boinc boinc        95 Jan  9 15:29 pilot_heartbeat.json
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc      8192 Jan  9 15:30 boinc_mmap_file
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc        27 Jan  9 15:30 wrapper_checkpoint.txt
[2026-01-09 15:30:21] -rw------- 1 boinc boinc      4823 Jan  9 15:30 pilotlog.txt
[2026-01-09 15:30:21] -rw------- 1 boinc boinc   1011397 Jan  9 15:30 log.47898826._030514.job.log.1
[2026-01-09 15:30:21] -rw------- 1 boinc boinc       357 Jan  9 15:30 output.list
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc       620 Jan  9 15:30 runtime_log
[2026-01-09 15:30:21] -rw------- 1 boinc boinc   1320960 Jan  9 15:30 result.tar.gz
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc      8912 Jan  9 15:30 runtime_log.err
[2026-01-09 15:30:21] -rw------- 1 boinc boinc       662 Jan  9 15:30 qzeMDm9VAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6xfKDm8Q6Nxm.diag
[2026-01-09 15:30:21] -rw-r--r-- 1 boinc boinc      6733 Jan  9 15:30 stderr.txt
[2026-01-09 15:30:21] HITS file was successfully produced:
[2026-01-09 15:30:21] -rw------- 1 boinc boinc 223676066 Jan  9 15:28 shared/HITS.pool.root.1
[2026-01-09 15:30:21]  *** Contents of shared directory: ***
[2026-01-09 15:30:21] total 439100
[2026-01-09 15:30:21] -rw-r--r-- 2 boinc boinc 224015239 Jan  9 13:32 ATLAS.root_0
[2026-01-09 15:30:21] -rw-r--r-- 2 boinc boinc    592396 Jan  9 13:32 input.tar.gz
[2026-01-09 15:30:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:32 start_atlas.sh
[2026-01-09 15:30:21] -rw------- 1 boinc boinc 223676066 Jan  9 15:28 HITS.pool.root.1
[2026-01-09 15:30:21] -rw------- 1 boinc boinc   1320960 Jan  9 15:30 result.tar.gz
15:30:22 (747747): run_atlas exited; CPU time 20438.954528
15:30:22 (747747): called boinc_finish(0)

</stderr_txt>
]]>

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