Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:29:25 (3402349): wrapper (7.7.26015): starting
18:29:25 (3402349): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 18:29:25] Arguments: --nthreads 3
[2026-01-09 18:29:25] Threads: 3
[2026-01-09 18:29:25] Checking for CVMFS
[2026-01-09 18:29:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:29:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:29:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:29:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:29:25] 2.9.2.0 2791136 2455 81044 154951 2 56 21450681 36864000 0 130560 0 1574184 99.988 92075 5115 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 18:29:25] CVMFS is ok
[2026-01-09 18:29:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:29:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:29:25] Further information can be found at the LHC@home message board.
[2026-01-09 18:29:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:29:25] Checking for apptainer binary...
[2026-01-09 18:29:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:29:25] Running /usr/bin/apptainer --version
[2026-01-09 18:29:25] apptainer version 1.4.1-1.1
[2026-01-09 18:29:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:29:26] thA337a
[2026-01-09 18:29:26] apptainer works
[2026-01-09 18:29:26] Set ATHENA_PROC_NUMBER=3
[2026-01-09 18:29:26] Set ATHENA_CORE_NUMBER=3
[2026-01-09 18:29:26] Starting ATLAS job with PandaID=6963153399
[2026-01-09 18:29:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:22:44]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:22:44] 2026-01-09 19:21:54,542 | INFO     | overall cleanup function is called
[2026-01-09 20:22:44] 2026-01-09 19:21:55,548 | INFO     | --- collectZombieJob: --- 10, [3412510]
[2026-01-09 20:22:44] 2026-01-09 19:21:55,549 | INFO     | zombie collector waiting for pid 3412510
[2026-01-09 20:22:44] 2026-01-09 19:21:55,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:22:44] 2026-01-09 19:21:55,549 | INFO     | collected zombie processes
[2026-01-09 20:22:44] 2026-01-09 19:21:55,549 | INFO     | will attempt to kill all subprocesses of pid=3412510
[2026-01-09 20:22:44] 2026-01-09 19:21:55,592 | INFO     | process IDs to be killed: [3412510] (in reverse order)
[2026-01-09 20:22:44] 2026-01-09 19:21:55,616 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:22:44] 2026-01-09 19:21:55,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:22:44] 2026-01-09 19:21:55,618 | INFO     | did not find any defunct processes belonging to 3412510
[2026-01-09 20:22:44] 2026-01-09 19:21:55,619 | INFO     | did not find any defunct processes belonging to 3412510
[2026-01-09 20:22:44] 2026-01-09 19:21:55,619 | INFO     | ready for new job
[2026-01-09 20:22:44] 2026-01-09 19:21:55,619 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:22:44] 2026-01-09 19:21:55,620 | INFO     | ***************************************
[2026-01-09 20:22:44] 2026-01-09 19:21:55,620 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:22:44] 2026-01-09 19:21:55,620 | INFO     | ***************************************
[2026-01-09 20:22:44] 2026-01-09 19:21:55,620 | INFO     | 
[2026-01-09 20:22:44] 2026-01-09 19:21:55,620 | INFO     | architecture information:
[2026-01-09 20:22:44] 2026-01-09 19:21:55,620 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:22:44] 2026-01-09 19:21:55,628 | INFO     | cat /etc/os-release:
[2026-01-09 20:22:44] NAME="CentOS Linux"
[2026-01-09 20:22:44] VERSION="7 (Core)"
[2026-01-09 20:22:44] ID="centos"
[2026-01-09 20:22:44] ID_LIKE="rhel fedora"
[2026-01-09 20:22:44] VERSION_ID="7"
[2026-01-09 20:22:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:22:44] ANSI_COLOR="0;31"
[2026-01-09 20:22:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:22:44] HOME_URL="https://www.centos.org/"
[2026-01-09 20:22:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:22:44] 
[2026-01-09 20:22:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:22:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:22:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:22:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:22:44] 
[2026-01-09 20:22:44] 2026-01-09 19:21:55,629 | INFO     | ***************************************
[2026-01-09 20:22:44] 2026-01-09 19:21:56,132 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 20:22:44] 2026-01-09 19:21:56,144 | INFO     | sufficient remaining disk space (383999016960 B)
[2026-01-09 20:22:44] 2026-01-09 19:21:56,144 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:22:44] 2026-01-09 19:21:56,144 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:22:44] 2026-01-09 19:21:56,145 | INFO     | update_server=False
[2026-01-09 20:22:44] 2026-01-09 19:21:56,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:22:44] 2026-01-09 19:21:56,145 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:22:44] 2026-01-09 19:21:56,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:22:44] 2026-01-09 19:21:56,145 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:22:44] 2026-01-09 19:21:56,189 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:22:44] 2026-01-09 19:21:56,190 | INFO     | aborting loop
[2026-01-09 20:22:44] 2026-01-09 19:21:56,344 | INFO     | all payload control threads have been joined
[2026-01-09 20:22:44] 2026-01-09 19:21:56,481 | INFO     | all data control threads have been joined
[2026-01-09 20:22:44] 2026-01-09 19:21:57,150 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,150 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,185 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,195 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,349 | INFO     | [payload] control thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,487 | INFO     | [data] control thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,624 | INFO     | [job] validate thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,712 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,724 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,798 | INFO     | all job control threads have been joined
[2026-01-09 20:22:44] 2026-01-09 19:21:57,806 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:57,850 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:58,151 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:58,597 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:21:58,799 | INFO     | [job] control thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:22:00,151 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:22:07,006 | INFO     | job.realtimelogging is not enabled
[2026-01-09 20:22:44] 2026-01-09 19:22:08,011 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:22:44] 2026-01-09 19:22:26,127 | INFO     | PID=3406070 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:22:44] 2026-01-09 19:22:26,128 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:22:44] 2026-01-09 19:22:26,128 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:22:44] 2026-01-09 19:22:26,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:22:44] 2026-01-09 19:22:38,863 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:22:44] 2026-01-09 19:22:39,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152387594048)>', '<ExcThread(monitor, started 140151762188032)>']
[2026-01-09 20:22:44] 2026-01-09 19:22:40,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:22:44] 2026-01-09 19:22:40,203 | INFO     | [monitor] control thread has ended
[2026-01-09 20:22:44] 2026-01-09 19:22:44,463 | INFO     | all workflow threads have been joined
[2026-01-09 20:22:44] 2026-01-09 19:22:44,463 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:22:44] 2026-01-09 19:22:44,463 | INFO     | traces error code: 0
[2026-01-09 20:22:44] 2026-01-09 19:22:44,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:22:44] 2026-01-09 19:22:44,512 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:22:44] 2026-01-09 19:22:44,514 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:22:44] 2026-01-09 19:22:44,517 [wrapper] pilotpid: 3406070
[2026-01-09 20:22:44] 2026-01-09 19:22:44,519 [wrapper] Pilot exit status: 0
[2026-01-09 20:22:44] 2026-01-09 19:22:44,526 [wrapper] pandaids: 6963153399
[2026-01-09 20:22:44] 2026-01-09 19:22:44,543 [wrapper] cleanup supervisor_pilot 3426953 3406071
[2026-01-09 20:22:44] 2026-01-09 19:22:44,545 [wrapper] Test setup, not cleaning
[2026-01-09 20:22:44] 2026-01-09 19:22:44,547 [wrapper] apfmon messages muted
[2026-01-09 20:22:44] 2026-01-09 19:22:44,549 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:22:44] 2026-01-09 19:22:44,552 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:22:44]  *** Error codes and diagnostics ***
[2026-01-09 20:22:44]     "exeErrorCode": 0,
[2026-01-09 20:22:44]     "exeErrorDiag": "",
[2026-01-09 20:22:44]     "pilotErrorCode": 0,
[2026-01-09 20:22:44]     "pilotErrorDiag": "",
[2026-01-09 20:22:44]  *** Listing of results directory ***
[2026-01-09 20:22:44] total 440352
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 20:22:44] -rwx------ 1 boinc boinc     36322 Jan  8 20:06 runpilot2-wrapper.sh
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:06 queuedata.json
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc       100 Jan  9 18:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:22:44] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 18:29 run_atlas
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc       105 Jan  9 18:29 job.xml
[2026-01-09 20:22:44] -rw-r--r-- 2 boinc boinc 223108470 Jan  9 18:29 EVNT.47898824._001163.pool.root.1
[2026-01-09 20:22:44] -rw-r--r-- 2 boinc boinc    592383 Jan  9 18:29 input.tar.gz
[2026-01-09 20:22:44] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:29 start_atlas.sh
[2026-01-09 20:22:44] drwxrwx--x 2 boinc boinc      4096 Jan  9 18:29 shared
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:29 boinc_setup_complete
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc      6446 Jan  9 18:29 init_data.xml
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:29 boinc_lockfile
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc      2520 Jan  9 18:29 pandaJob.out
[2026-01-09 20:22:44] -rw------- 1 boinc boinc    989356 Jan  9 18:29 agis_schedconf.cvmfs.json
[2026-01-09 20:22:44] -rw------- 1 boinc boinc   1516240 Jan  9 18:29 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:22:44] drwx------ 5 boinc boinc      4096 Jan  9 18:29 pilot3
[2026-01-09 20:22:44] -rw------- 1 boinc boinc 221369859 Jan  9 20:21 HITS.47898826._030072.pool.root.1
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc       529 Jan  9 20:21 boinc_task_state.xml
[2026-01-09 20:22:44] -rw------- 1 boinc boinc      1025 Jan  9 20:21 memory_monitor_summary.json
[2026-01-09 20:22:44] -rw------- 1 boinc boinc    296378 Jan  9 20:21 log.47898826._030072.job.log.tgz.1
[2026-01-09 20:22:44] -rw------- 1 boinc boinc      7751 Jan  9 20:21 heartbeat.json
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc      8192 Jan  9 20:22 boinc_mmap_file
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc        27 Jan  9 20:22 wrapper_checkpoint.txt
[2026-01-09 20:22:44] -rw------- 1 boinc boinc        95 Jan  9 20:22 pilot_heartbeat.json
[2026-01-09 20:22:44] -rw------- 1 boinc boinc      4824 Jan  9 20:22 pilotlog.txt
[2026-01-09 20:22:44] -rw------- 1 boinc boinc    974728 Jan  9 20:22 log.47898826._030072.job.log.1
[2026-01-09 20:22:44] -rw------- 1 boinc boinc       357 Jan  9 20:22 output.list
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc       620 Jan  9 20:22 runtime_log
[2026-01-09 20:22:44] -rw------- 1 boinc boinc   1290240 Jan  9 20:22 result.tar.gz
[2026-01-09 20:22:44] -rw------- 1 boinc boinc       660 Jan  9 20:22 wqqKDmvVAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4vfKDmn5zwCn.diag
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc      8902 Jan  9 20:22 runtime_log.err
[2026-01-09 20:22:44] -rw-r--r-- 1 boinc boinc     10802 Jan  9 20:22 stderr.txt
[2026-01-09 20:22:44] HITS file was successfully produced:
[2026-01-09 20:22:44] -rw------- 1 boinc boinc 221369859 Jan  9 20:21 shared/HITS.pool.root.1
[2026-01-09 20:22:44]  *** Contents of shared directory: ***
[2026-01-09 20:22:44] total 435928
[2026-01-09 20:22:44] -rw-r--r-- 2 boinc boinc 223108470 Jan  9 18:29 ATLAS.root_0
[2026-01-09 20:22:44] -rw-r--r-- 2 boinc boinc    592383 Jan  9 18:29 input.tar.gz
[2026-01-09 20:22:44] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:29 start_atlas.sh
[2026-01-09 20:22:44] -rw------- 1 boinc boinc 221369859 Jan  9 20:21 HITS.pool.root.1
[2026-01-09 20:22:44] -rw------- 1 boinc boinc   1290240 Jan  9 20:22 result.tar.gz
20:22:46 (3402349): run_atlas exited; CPU time 19438.543858
20:22:46 (3402349): called boinc_finish(0)

</stderr_txt>
]]>

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