Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:36:46 (15990): wrapper (7.7.26015): starting
00:36:46 (15990): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 00:36:46] Arguments: --nthreads 8
[2026-01-09 00:36:46] Threads: 8
[2026-01-09 00:36:46] Checking for CVMFS
[2026-01-09 00:36:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:36:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:36:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:36:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:36:46] 2.11.2.0 6956 180605 134000 154933 0 58 13220492 18432001 1315 130560 0 120976085 99.979 7072306 33004 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:36:46] CVMFS is ok
[2026-01-09 00:36:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:36:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:36:46] Further information can be found at the LHC@home message board.
[2026-01-09 00:36:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:36:46] Checking for apptainer binary...
[2026-01-09 00:36:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:36:46] Running /usr/bin/apptainer --version
[2026-01-09 00:36:46] apptainer version 1.3.2-1.el7
[2026-01-09 00:36:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:36:47] c-206-16.aglt2.org
[2026-01-09 00:36:47] apptainer works
[2026-01-09 00:36:47] Set ATHENA_PROC_NUMBER=8
[2026-01-09 00:36:47] Set ATHENA_CORE_NUMBER=8
[2026-01-09 00:36:47] Starting ATLAS job with PandaID=6963077730
[2026-01-09 00:36:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:08:05]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:08:05] 2026-01-09 16:07:10,992 | INFO     | time since job start (37812s) is within the limit (174528.0s)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,148 | INFO     | PID=19692 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 11:08:05] 2026-01-09 16:07:12,148 | INFO     | .. there are 3 such processes running
[2026-01-09 11:08:05] 2026-01-09 16:07:12,692 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 11:08:05] 2026-01-09 16:07:12,696 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2439.125
[2026-01-09 11:08:05] 2026-01-09 16:07:12,698 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963077730/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,699 | INFO     | extracted standard info from prmon json
[2026-01-09 11:08:05] 2026-01-09 16:07:12,699 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:08:05] 2026-01-09 16:07:12,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:08:05] 2026-01-09 16:07:12,707 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:08:05] 2026-01-09 16:07:12,708 | INFO     | sum of square deviations: 73901027292.5741
[2026-01-09 11:08:05] 2026-01-09 16:07:12,721 | INFO     | sum of deviations: 515557576415.1062
[2026-01-09 11:08:05] 2026-01-09 16:07:12,721 | INFO     | mean x: 1767955925.2935483
[2026-01-09 11:08:05] 2026-01-09 16:07:12,721 | INFO     | mean y: 2868350.8016129034
[2026-01-09 11:08:05] 2026-01-09 16:07:12,721 | INFO     | intersect: -12330966582.838858
[2026-01-09 11:08:05] 2026-01-09 16:07:12,722 | INFO     | chi2: 5.050342715574797
[2026-01-09 11:08:05] 2026-01-09 16:07:12,723 | INFO     | sum of square deviations: 72127618514.40012
[2026-01-09 11:08:05] 2026-01-09 16:07:12,735 | INFO     | sum of deviations: 697349368789.6003
[2026-01-09 11:08:05] 2026-01-09 16:07:12,736 | INFO     | mean x: 1767955772.8
[2026-01-09 11:08:05] 2026-01-09 16:07:12,736 | INFO     | mean y: 2883959.224390244
[2026-01-09 11:08:05] 2026-01-09 16:07:12,736 | INFO     | intersect: -17090191725.28428
[2026-01-09 11:08:05] 2026-01-09 16:07:12,737 | INFO     | chi2: 2.340044300221144
[2026-01-09 11:08:05] 2026-01-09 16:07:12,737 | INFO     | current chi2=2.340044300221144 (change=53.665633561764814 %)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,738 | INFO     | sum of square deviations: 70382814923.67375
[2026-01-09 11:08:05] 2026-01-09 16:07:12,751 | INFO     | sum of deviations: 711364264598.2299
[2026-01-09 11:08:05] 2026-01-09 16:07:12,751 | INFO     | mean x: 1767955620.3065574
[2026-01-09 11:08:05] 2026-01-09 16:07:12,751 | INFO     | mean y: 2885178.4426229508
[2026-01-09 11:08:05] 2026-01-09 16:07:12,751 | INFO     | intersect: -17865971744.167595
[2026-01-09 11:08:05] 2026-01-09 16:07:12,752 | INFO     | chi2: 2.261639466657667
[2026-01-09 11:08:05] 2026-01-09 16:07:12,753 | INFO     | current chi2=2.261639466657667 (change=3.350570480912164 %)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,753 | INFO     | right removable region: 609
[2026-01-09 11:08:05] 2026-01-09 16:07:12,754 | INFO     | sum of square deviations: 72127318394.40012
[2026-01-09 11:08:05] 2026-01-09 16:07:12,762 | INFO     | sum of deviations: 355886086971.8007
[2026-01-09 11:08:05] 2026-01-09 16:07:12,762 | INFO     | mean x: 1767956077.8
[2026-01-09 11:08:05] 2026-01-09 16:07:12,762 | INFO     | mean y: 2882047.063414634
[2026-01-09 11:08:05] 2026-01-09 16:07:12,762 | INFO     | intersect: -8720455856.97135
[2026-01-09 11:08:05] 2026-01-09 16:07:12,763 | INFO     | chi2: 2.911593342047923
[2026-01-09 11:08:05] 2026-01-09 16:07:12,763 | INFO     | current chi2=2.911593342047923 (change=42.348598777884234 %)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,764 | INFO     | sum of square deviations: 70382214683.67377
[2026-01-09 11:08:05] 2026-01-09 16:07:12,770 | INFO     | sum of deviations: 325315429559.0751
[2026-01-09 11:08:05] 2026-01-09 16:07:12,771 | INFO     | mean x: 1767956230.3065574
[2026-01-09 11:08:05] 2026-01-09 16:07:12,771 | INFO     | mean y: 2884717.331147541
[2026-01-09 11:08:05] 2026-01-09 16:07:12,771 | INFO     | intersect: -8168830865.771044
[2026-01-09 11:08:05] 2026-01-09 16:07:12,772 | INFO     | chi2: 2.882120833955129
[2026-01-09 11:08:05] 2026-01-09 16:07:12,772 | INFO     | current chi2=2.882120833955129 (change=1.0122467195938905 %)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,772 | INFO     | left removable region: 20
[2026-01-09 11:08:05] 2026-01-09 16:07:12,773 | INFO     | sum of square deviations: 63360851002.28182
[2026-01-09 11:08:05] 2026-01-09 16:07:12,779 | INFO     | sum of deviations: 488146968770.3966
[2026-01-09 11:08:05] 2026-01-09 16:07:12,779 | INFO     | mean x: 1767956199.8217318
[2026-01-09 11:08:05] 2026-01-09 16:07:12,779 | INFO     | mean y: 2905365.984719864
[2026-01-09 11:08:05] 2026-01-09 16:07:12,779 | INFO     | intersect: -13617846978.877691
[2026-01-09 11:08:05] 2026-01-09 16:07:12,780 | INFO     | chi2: 0.05779811626541534
[2026-01-09 11:08:05] 2026-01-09 16:07:12,780 | INFO     | current memory leak: 7.70 B/s (using 589 data points, chi2=0.06)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | could have reported an average CPU frequency of 2518 MHz (24 samples)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | ..............................
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | . Timing measurements:
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | . get job = 0 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | . initial setup = 2 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | . payload setup = 6 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | . stage-in = 0 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | . payload execution = 37778 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,781 | INFO     | . stage-out = 2 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,782 | INFO     | . log creation = 0 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,782 | INFO     | ..............................
[2026-01-09 11:08:05] 2026-01-09 16:07:12,879 | INFO     | 
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | job summary report
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | --------------------------------------------------
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | PanDA job id: 6963077730
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | task id: 47962010
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | errors: (none)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | pilot state: finished 
[2026-01-09 11:08:05] 2026-01-09 16:07:12,880 | INFO     | transexitcode: 0
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | exeerrorcode: 0
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | exeerrordiag: 
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | exitcode: 0
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | exitmsg: OK
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | cpuconsumptiontime: 295138 s
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | nevents: 450
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | neventsw: 0
[2026-01-09 11:08:05] 2026-01-09 16:07:12,881 | INFO     | pid: 26850
[2026-01-09 11:08:05] 2026-01-09 16:07:12,882 | INFO     | pgrp: 26850
[2026-01-09 11:08:05] 2026-01-09 16:07:12,882 | INFO     | corecount: 8
[2026-01-09 11:08:05] 2026-01-09 16:07:12,882 | INFO     | event service: False
[2026-01-09 11:08:05] 2026-01-09 16:07:12,882 | INFO     | sizes: {0: 2284619, 4: 2284881, 11: 2284909, 37788: 2326742, 37789: 2326741, 37793: 2335975, 37799: 2336165}
[2026-01-09 11:08:05] 2026-01-09 16:07:12,882 | INFO     | --------------------------------------------------
[2026-01-09 11:08:05] 2026-01-09 16:07:12,882 | INFO     | 
[2026-01-09 11:08:05] 2026-01-09 16:07:12,883 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 11:08:05] 2026-01-09 16:07:12,913 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,913 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,913 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,914 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,914 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,914 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,914 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,914 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,914 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,915 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,915 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,915 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,915 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,915 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,916 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,916 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,916 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,916 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,916 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,917 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:08:05] 2026-01-09 16:07:12,917 | INFO     | job 6963077730 has completed (purged errors)
[2026-01-09 11:08:05] 2026-01-09 16:07:12,917 | INFO     | overall cleanup function is called
[2026-01-09 11:08:05] 2026-01-09 16:07:13,934 | INFO     | --- collectZombieJob: --- 10, [26850]
[2026-01-09 11:08:05] 2026-01-09 16:07:13,934 | INFO     | zombie collector waiting for pid 26850
[2026-01-09 11:08:05] 2026-01-09 16:07:13,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:08:05] 2026-01-09 16:07:13,934 | INFO     | collected zombie processes
[2026-01-09 11:08:05] 2026-01-09 16:07:13,934 | INFO     | will attempt to kill all subprocesses of pid=26850
[2026-01-09 11:08:05] 2026-01-09 16:07:14,105 | INFO     | process IDs to be killed: [26850] (in reverse order)
[2026-01-09 11:08:05] 2026-01-09 16:07:14,152 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:08:05] 2026-01-09 16:07:14,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:08:05] 2026-01-09 16:07:14,155 | INFO     | did not find any defunct processes belonging to 26850
[2026-01-09 11:08:05] 2026-01-09 16:07:14,158 | INFO     | did not find any defunct processes belonging to 26850
[2026-01-09 11:08:05] 2026-01-09 16:07:14,158 | INFO     | ready for new job
[2026-01-09 11:08:05] 2026-01-09 16:07:14,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:08:05] 2026-01-09 16:07:14,160 | INFO     | ***************************************
[2026-01-09 11:08:05] 2026-01-09 16:07:14,160 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:08:05] 2026-01-09 16:07:14,160 | INFO     | ***************************************
[2026-01-09 11:08:05] 2026-01-09 16:07:14,160 | INFO     | 
[2026-01-09 11:08:05] 2026-01-09 16:07:14,161 | INFO     | architecture information:
[2026-01-09 11:08:05] 2026-01-09 16:07:14,162 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:08:05] 2026-01-09 16:07:14,171 | INFO     | cat /etc/os-release:
[2026-01-09 11:08:05] NAME="CentOS Linux"
[2026-01-09 11:08:05] VERSION="7 (Core)"
[2026-01-09 11:08:05] ID="centos"
[2026-01-09 11:08:05] ID_LIKE="rhel fedora"
[2026-01-09 11:08:05] VERSION_ID="7"
[2026-01-09 11:08:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:08:05] ANSI_COLOR="0;31"
[2026-01-09 11:08:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:08:05] HOME_URL="https://www.centos.org/"
[2026-01-09 11:08:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:08:05] 
[2026-01-09 11:08:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:08:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:08:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:08:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:08:05] 
[2026-01-09 11:08:05] 2026-01-09 16:07:14,171 | INFO     | ***************************************
[2026-01-09 11:08:05] 2026-01-09 16:07:14,675 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 11:08:05] 2026-01-09 16:07:14,697 | INFO     | sufficient remaining disk space (27841789952 B)
[2026-01-09 11:08:05] 2026-01-09 16:07:14,698 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:08:05] 2026-01-09 16:07:14,698 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:08:05] 2026-01-09 16:07:14,698 | INFO     | update_server=False
[2026-01-09 11:08:05] 2026-01-09 16:07:14,698 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:08:05] 2026-01-09 16:07:14,699 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:08:05] 2026-01-09 16:07:14,699 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:08:05] 2026-01-09 16:07:14,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:08:05] 2026-01-09 16:07:14,700 | INFO     | aborting loop
[2026-01-09 11:08:05] 2026-01-09 16:07:15,043 | INFO     | all data control threads have been joined
[2026-01-09 11:08:05] 2026-01-09 16:07:15,587 | INFO     | all payload control threads have been joined
[2026-01-09 11:08:05] 2026-01-09 16:07:15,636 | INFO     | all job control threads have been joined
[2026-01-09 11:08:05] 2026-01-09 16:07:15,700 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:15,704 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:15,705 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,048 | INFO     | [data] control thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,203 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,223 | INFO     | [job] validate thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,264 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,346 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,593 | INFO     | [payload] control thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,642 | INFO     | [job] control thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,705 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:16,852 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:17,159 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:17,195 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:17,196 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:17,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:08:05] 2026-01-09 16:07:21,261 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:08:05] 2026-01-09 16:07:43,188 | INFO     | 37817s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 11:08:05] 2026-01-09 16:07:44,383 | INFO     | PID=19692 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 11:08:05] 2026-01-09 16:07:44,383 | INFO     | .. there are 3 such processes running
[2026-01-09 11:08:05] 2026-01-09 16:07:44,384 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:08:05] 2026-01-09 16:07:44,384 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:08:05] 2026-01-09 16:07:44,384 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:08:05] 2026-01-09 16:08:00,400 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:08:05] 2026-01-09 16:08:00,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140546081630016)>', '<ExcThread(monitor, started 140545414391552)>']
[2026-01-09 11:08:05] 2026-01-09 16:08:01,462 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:08:05] 2026-01-09 16:08:01,462 | INFO     | [monitor] control thread has ended
[2026-01-09 11:08:05] 2026-01-09 16:08:05,529 | INFO     | all workflow threads have been joined
[2026-01-09 11:08:05] 2026-01-09 16:08:05,529 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:08:05] 2026-01-09 16:08:05,530 | INFO     | traces error code: 0
[2026-01-09 11:08:05] 2026-01-09 16:08:05,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:08:05] 2026-01-09 16:08:05,659 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:08:05] 2026-01-09 16:08:05,661 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:08:05] 2026-01-09 16:08:05,664 [wrapper] pilotpid: 19692
[2026-01-09 11:08:05] 2026-01-09 16:08:05,666 [wrapper] Pilot exit status: 0
[2026-01-09 11:08:05] 2026-01-09 16:08:05,675 [wrapper] pandaids: 6963077730
[2026-01-09 11:08:05] 2026-01-09 16:08:05,722 [wrapper] cleanup supervisor_pilot 29994 19693
[2026-01-09 11:08:05] 2026-01-09 16:08:05,725 [wrapper] Test setup, not cleaning
[2026-01-09 11:08:05] 2026-01-09 16:08:05,727 [wrapper] apfmon messages muted
[2026-01-09 11:08:05] 2026-01-09 16:08:05,729 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:08:05] 2026-01-09 16:08:05,731 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:08:05]  *** Error codes and diagnostics ***
[2026-01-09 11:08:05]     "exeErrorCode": 0,
[2026-01-09 11:08:05]     "exeErrorDiag": "",
[2026-01-09 11:08:05]     "pilotErrorCode": 0,
[2026-01-09 11:08:05]     "pilotErrorDiag": "",
[2026-01-09 11:08:05]  *** Listing of results directory ***
[2026-01-09 11:08:05] total 787340
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 06:56 queuedata.json
[2026-01-09 11:08:05] -rwx------ 1 boincer umatlas     36322 Jan  8 06:56 runpilot2-wrapper.sh
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas       100 Jan  9 00:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:08:05] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 00:36 run_atlas
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas       105 Jan  9 00:36 job.xml
[2026-01-09 11:08:05] -rw-r--r-- 2 boincer umatlas 394246431 Jan  9 00:36 EVNT.47962006._000040.pool.root.1
[2026-01-09 11:08:05] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:36 start_atlas.sh
[2026-01-09 11:08:05] drwxrwx--x 2 boincer umatlas      4096 Jan  9 00:36 shared
[2026-01-09 11:08:05] -rw-r--r-- 2 boincer umatlas    592607 Jan  9 00:36 input.tar.gz
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas         0 Jan  9 00:36 boinc_lockfile
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas      2890 Jan  9 00:36 pandaJob.out
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas        57 Jan  9 00:36 setup.sh.local
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas    989771 Jan  9 00:36 agis_schedconf.cvmfs.json
[2026-01-09 11:08:05] drwx------ 5 boincer umatlas      4096 Jan  9 00:36 pilot3
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas       533 Jan  9 10:54 boinc_task_state.xml
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas      5951 Jan  9 11:02 init_data.xml
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas 394078718 Jan  9 11:06 HITS.47962010._000228.pool.root.1
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas      1064 Jan  9 11:06 memory_monitor_summary.json
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas        95 Jan  9 11:07 pilot_heartbeat.json
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas   1516240 Jan  9 11:07 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas   1754640 Jan  9 11:07 log.47962010._000228.job.log.tgz.1
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas      8653 Jan  9 11:07 heartbeat.json
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 11:08 boinc_mmap_file
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas        29 Jan  9 11:08 wrapper_checkpoint.txt
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas      4937 Jan  9 11:08 pilotlog.txt
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas   5241363 Jan  9 11:08 log.47962010._000228.job.log.1
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas       353 Jan  9 11:08 output.list
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas       620 Jan  9 11:08 runtime_log
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas   7014400 Jan  9 11:08 result.tar.gz
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 11:08 runtime_log.err
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas       667 Jan  9 11:08 iP7KDmBo3x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvTkKDmRxStAn.diag
[2026-01-09 11:08:05] -rw-r--r-- 1 boincer umatlas     21243 Jan  9 11:08 stderr.txt
[2026-01-09 11:08:05] HITS file was successfully produced:
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas 394078718 Jan  9 11:06 shared/HITS.pool.root.1
[2026-01-09 11:08:05]  *** Contents of shared directory: ***
[2026-01-09 11:08:05] total 777304
[2026-01-09 11:08:05] -rw-r--r-- 2 boincer umatlas 394246431 Jan  9 00:36 ATLAS.root_0
[2026-01-09 11:08:05] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:36 start_atlas.sh
[2026-01-09 11:08:05] -rw-r--r-- 2 boincer umatlas    592607 Jan  9 00:36 input.tar.gz
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas 394078718 Jan  9 11:06 HITS.pool.root.1
[2026-01-09 11:08:05] -rw------- 1 boincer umatlas   7014400 Jan  9 11:08 result.tar.gz
11:08:07 (15990): run_atlas exited; CPU time 294623.770429
11:08:07 (15990): called boinc_finish(0)

</stderr_txt>
]]>

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