Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:05:50 (3526294): wrapper (7.7.26015): starting
06:05:50 (3526294): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 06:05:50] Arguments: --nthreads 12
[2026-01-09 06:05:50] Threads: 12
[2026-01-09 06:05:50] Checking for CVMFS
[2026-01-09 06:05:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:05:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:05:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:05:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:05:51] 2.11.0.0 331953 1308 94192 154933 1 253 5953564 6144001 12239 130560 0 17507079 99.999 52366 198 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-09 06:05:51] CVMFS is ok
[2026-01-09 06:05:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:05:51] Checking for apptainer binary...
[2026-01-09 06:05:51] apptainer is not installed, using version from CVMFS
[2026-01-09 06:05:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:05:51] radiat0r
[2026-01-09 06:05:51] apptainer works
[2026-01-09 06:05:51] Set ATHENA_PROC_NUMBER=12
[2026-01-09 06:05:51] Set ATHENA_CORE_NUMBER=12
[2026-01-09 06:05:51] Starting ATLAS job with PandaID=6963144014
[2026-01-09 06:05:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:19:41]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:19:41]  status=None
[2026-01-09 07:19:41]  status_code=0
[2026-01-09 07:19:41]  storage_token=
[2026-01-09 07:19:41]  surl=/var/lib/boinc/slots/19/PanDA_Pilot-6963144014/log.47898826._025238.job.log.tgz.1
[2026-01-09 07:19:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/8c/log.47898826._025238.job.log.tgz.1
[2026-01-09 07:19:41]  workdir=None
[2026-01-09 07:19:41] ]
[2026-01-09 07:19:41] 2026-01-09 07:18:58,074 | INFO     | transferring file log.47898826._025238.job.log.tgz.1 from /var/lib/boinc/slots/19/PanDA_Pilot-6963144014/log.47898826._025238.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-09 07:19:41] 2026-01-09 07:18:58,074 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/19/PanDA_Pilot-6963144014/log.47898826._025238.job.log.tgz.1 /var/lib/boinc/slots/19/log.47898826._025238.j
[2026-01-09 07:19:41] 2026-01-09 07:18:58,105 | INFO     | adding to output.list: log.47898826._025238.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/8c/log.47898826._025238.job.log.tg
[2026-01-09 07:19:41] 2026-01-09 07:18:58,106 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 07:19:41] 2026-01-09 07:18:58,106 | INFO     | summary of transferred files:
[2026-01-09 07:19:41] 2026-01-09 07:18:58,106 | INFO     |  -- lfn=log.47898826._025238.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 07:19:41] 2026-01-09 07:18:58,107 | INFO     | stage-out finished correctly
[2026-01-09 07:19:41] 2026-01-09 07:18:58,209 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 07:19:41] 2026-01-09 07:18:59,759 | INFO     | monitor loop #302: job 0:6963144014 is in state 'finished'
[2026-01-09 07:19:41] 2026-01-09 07:18:59,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 07:19:41] 2026-01-09 07:18:59,980 | INFO     | time since job start (4371s) is within the limit (174528.0s)
[2026-01-09 07:19:41] 2026-01-09 07:19:00,120 | INFO     | job 6963144014 has state=finished
[2026-01-09 07:19:41] 2026-01-09 07:19:00,120 | INFO     | preparing for final server update for job 6963144014 in state='finished'
[2026-01-09 07:19:41] 2026-01-09 07:19:00,121 | INFO     | this job has now completed (state=finished)
[2026-01-09 07:19:41] 2026-01-09 07:19:00,121 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 07:19:41] 2026-01-09 07:19:00,121 | INFO     | log transfer has been attempted: DONE
[2026-01-09 07:19:41] 2026-01-09 07:19:00,121 | INFO     | job 6963144014 has finished - writing final server update
[2026-01-09 07:19:41] 2026-01-09 07:19:00,121 | INFO     | total number of processed events: 400 (read)
[2026-01-09 07:19:41] 2026-01-09 07:19:00,124 | INFO     | executing command: lscpu
[2026-01-09 07:19:41] 2026-01-09 07:19:00,323 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 07:19:41] 2026-01-09 07:19:01,986 | INFO     | time since job start (4373s) is within the limit (174528.0s)
[2026-01-09 07:19:41] 2026-01-09 07:19:02,262 | INFO     | monitor loop #303: job 0:6963144014 is in state 'finished'
[2026-01-09 07:19:41] 2026-01-09 07:19:02,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 07:19:41] 2026-01-09 07:19:03,992 | INFO     | time since job start (4375s) is within the limit (174528.0s)
[2026-01-09 07:19:41] 2026-01-09 07:19:04,765 | INFO     | monitor loop #304: job 0:6963144014 is in state 'finished'
[2026-01-09 07:19:41] 2026-01-09 07:19:04,766 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 07:19:41] 2026-01-09 07:19:06,052 | INFO     | PID=3531014 has CPU usage=18.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 07:19:41] 2026-01-09 07:19:06,052 | INFO     | .. there are 14 such processes running
[2026-01-09 07:19:41] 2026-01-09 07:19:07,052 | INFO     | time since job start (4379s) is within the limit (174528.0s)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,237 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 07:19:41] 2026-01-09 07:19:07,268 | INFO     | monitor loop #305: job 0:6963144014 is in state 'finished'
[2026-01-09 07:19:41] 2026-01-09 07:19:07,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,299 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2415.218484374999
[2026-01-09 07:19:41] 2026-01-09 07:19:07,375 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6963144014/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,376 | INFO     | extracted standard info from prmon json
[2026-01-09 07:19:41] 2026-01-09 07:19:07,376 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 07:19:41] 2026-01-09 07:19:07,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 07:19:41] 2026-01-09 07:19:07,377 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:19:41] 2026-01-09 07:19:07,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:19:41] 2026-01-09 07:19:07,379 | INFO     | fitting pss+swap vs Time
[2026-01-09 07:19:41] 2026-01-09 07:19:07,379 | INFO     | sum of square deviations: 85136480.0
[2026-01-09 07:19:41] 2026-01-09 07:19:07,379 | INFO     | sum of deviations: 1474617233.0
[2026-01-09 07:19:41] 2026-01-09 07:19:07,379 | INFO     | mean x: 1767941058.0
[2026-01-09 07:19:41] 2026-01-09 07:19:07,379 | INFO     | mean y: 2658731.3076923075
[2026-01-09 07:19:41] 2026-01-09 07:19:07,379 | INFO     | intersect: -30619189283.257305
[2026-01-09 07:19:41] 2026-01-09 07:19:07,380 | INFO     | chi2: 0.0292146068238402
[2026-01-09 07:19:41] 2026-01-09 07:19:07,380 | INFO     | current memory leak: 17.32 B/s (using 65 data points, chi2=0.03)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,380 | INFO     | could have reported an average CPU frequency of 2423 MHz (6 samples)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,380 | INFO     | ..............................
[2026-01-09 07:19:41] 2026-01-09 07:19:07,380 | INFO     | . Timing measurements:
[2026-01-09 07:19:41] 2026-01-09 07:19:07,380 | INFO     | . get job = 0 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,380 | INFO     | . initial setup = 3 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,381 | INFO     | . payload setup = 8 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,381 | INFO     | . stage-in = 0 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,381 | INFO     | . payload execution = 4339 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,381 | INFO     | . stage-out = 1 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,381 | INFO     | . log creation = 0 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,381 | INFO     | ..............................
[2026-01-09 07:19:41] 2026-01-09 07:19:07,472 | INFO     | 
[2026-01-09 07:19:41] 2026-01-09 07:19:07,472 | INFO     | job summary report
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | --------------------------------------------------
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | PanDA job id: 6963144014
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | task id: 47898826
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | errors: (none)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | pilot state: finished 
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | transexitcode: 0
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | exeerrorcode: 0
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | exeerrordiag: 
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | exitcode: 0
[2026-01-09 07:19:41] 2026-01-09 07:19:07,473 | INFO     | exitmsg: OK
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | cpuconsumptiontime: 47340 s
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | nevents: 400
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | neventsw: 0
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | pid: 3539188
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | pgrp: 3539188
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | corecount: 12
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | event service: False
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | sizes: {0: 2283969, 7: 2284231, 11: 2284259, 4351: 2310568, 4352: 2319624, 4361: 2319762}
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | --------------------------------------------------
[2026-01-09 07:19:41] 2026-01-09 07:19:07,474 | INFO     | 
[2026-01-09 07:19:41] 2026-01-09 07:19:07,475 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-01-09 07:19:41] 2026-01-09 07:19:07,504 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,504 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,505 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | job 6963144014 has completed (purged errors)
[2026-01-09 07:19:41] 2026-01-09 07:19:07,506 | INFO     | overall cleanup function is called
[2026-01-09 07:19:41] 2026-01-09 07:19:08,516 | INFO     | --- collectZombieJob: --- 10, [3539188]
[2026-01-09 07:19:41] 2026-01-09 07:19:08,516 | INFO     | zombie collector waiting for pid 3539188
[2026-01-09 07:19:41] 2026-01-09 07:19:08,516 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:19:41] 2026-01-09 07:19:08,516 | INFO     | collected zombie processes
[2026-01-09 07:19:41] 2026-01-09 07:19:08,516 | INFO     | will attempt to kill all subprocesses of pid=3539188
[2026-01-09 07:19:41] 2026-01-09 07:19:09,348 | INFO     | process IDs to be killed: [3539188] (in reverse order)
[2026-01-09 07:19:41] 2026-01-09 07:19:09,628 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:19:41] 2026-01-09 07:19:09,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:19:41] 2026-01-09 07:19:09,656 | INFO     | did not find any defunct processes belonging to 3539188
[2026-01-09 07:19:41] 2026-01-09 07:19:09,681 | INFO     | did not find any defunct processes belonging to 3539188
[2026-01-09 07:19:41] 2026-01-09 07:19:09,682 | INFO     | ready for new job
[2026-01-09 07:19:41] 2026-01-09 07:19:09,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:19:41] 2026-01-09 07:19:09,684 | INFO     | ***************************************
[2026-01-09 07:19:41] 2026-01-09 07:19:09,684 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:19:41] 2026-01-09 07:19:09,684 | INFO     | ***************************************
[2026-01-09 07:19:41] 2026-01-09 07:19:09,684 | INFO     | 
[2026-01-09 07:19:41] 2026-01-09 07:19:09,722 | INFO     | architecture information:
[2026-01-09 07:19:41] 2026-01-09 07:19:09,723 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:19:41] 2026-01-09 07:19:09,746 | INFO     | cat /etc/os-release:
[2026-01-09 07:19:41] NAME="CentOS Linux"
[2026-01-09 07:19:41] VERSION="7 (Core)"
[2026-01-09 07:19:41] ID="centos"
[2026-01-09 07:19:41] ID_LIKE="rhel fedora"
[2026-01-09 07:19:41] VERSION_ID="7"
[2026-01-09 07:19:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:19:41] ANSI_COLOR="0;31"
[2026-01-09 07:19:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:19:41] HOME_URL="https://www.centos.org/"
[2026-01-09 07:19:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:19:41] 
[2026-01-09 07:19:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:19:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:19:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:19:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:19:41] 
[2026-01-09 07:19:41] 2026-01-09 07:19:09,747 | INFO     | ***************************************
[2026-01-09 07:19:41] 2026-01-09 07:19:10,250 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-01-09 07:19:41] 2026-01-09 07:19:10,277 | INFO     | sufficient remaining disk space (1693147201536 B)
[2026-01-09 07:19:41] 2026-01-09 07:19:10,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:19:41] 2026-01-09 07:19:10,278 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:19:41] 2026-01-09 07:19:10,278 | INFO     | update_server=False
[2026-01-09 07:19:41] 2026-01-09 07:19:10,278 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:19:41] 2026-01-09 07:19:10,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:19:41] 2026-01-09 07:19:10,776 | INFO     | aborting loop
[2026-01-09 07:19:41] 2026-01-09 07:19:11,038 | INFO     | all payload control threads have been joined
[2026-01-09 07:19:41] 2026-01-09 07:19:11,223 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:19:41] 2026-01-09 07:19:11,240 | INFO     | all data control threads have been joined
[2026-01-09 07:19:41] 2026-01-09 07:19:11,280 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:11,301 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:11,548 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:11,620 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:11,640 | INFO     | all job control threads have been joined
[2026-01-09 07:19:41] 2026-01-09 07:19:11,780 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,044 | INFO     | [payload] control thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,244 | INFO     | [data] control thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,244 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,262 | INFO     | [job] validate thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,483 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:19:41] 2026-01-09 07:19:12,524 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,528 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,644 | INFO     | [job] control thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:12,668 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:13,229 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:13,296 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:19:41] 2026-01-09 07:19:13,488 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:14,232 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:19:41] 2026-01-09 07:19:17,302 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:19:41] 2026-01-09 07:19:17,825 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139870677985088)>', '<ExcThread(monitor, started 139869972068096)>']
[2026-01-09 07:19:41] 2026-01-09 07:19:22,848 | INFO     | all workflow threads have been joined
[2026-01-09 07:19:41] 2026-01-09 07:19:22,848 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:19:41] 2026-01-09 07:19:22,848 | INFO     | traces error code: 0
[2026-01-09 07:19:41] 2026-01-09 07:19:22,849 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:19:41] 2026-01-09 07:19:41,119 | INFO     | PID=3531014 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 07:19:41] 2026-01-09 07:19:41,119 | INFO     | .. there are 14 such processes running
[2026-01-09 07:19:41] 2026-01-09 07:19:41,120 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:19:41] 2026-01-09 07:19:41,120 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:19:41] 2026-01-09 07:19:41,120 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:19:41] 2026-01-09 07:19:41,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:19:41] 2026-01-09 07:19:41,120 | INFO     | [monitor] control thread has ended
[2026-01-09 07:19:41] 2026-01-09 07:19:41,285 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:19:41] 2026-01-09 07:19:41,288 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:19:41] 2026-01-09 07:19:41,291 [wrapper] pilotpid: 3531014
[2026-01-09 07:19:41] 2026-01-09 07:19:41,295 [wrapper] Pilot exit status: 0
[2026-01-09 07:19:41] 2026-01-09 07:19:41,309 [wrapper] pandaids: 6963144014
[2026-01-09 07:19:41] 2026-01-09 07:19:41,489 [wrapper] cleanup supervisor_pilot 3890177 3531015
[2026-01-09 07:19:41] 2026-01-09 07:19:41,493 [wrapper] Test setup, not cleaning
[2026-01-09 07:19:41] 2026-01-09 07:19:41,495 [wrapper] apfmon messages muted
[2026-01-09 07:19:41] 2026-01-09 07:19:41,498 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:19:41] 2026-01-09 07:19:41,501 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:19:41]  *** Error codes and diagnostics ***
[2026-01-09 07:19:41]     "exeErrorCode": 0,
[2026-01-09 07:19:41]     "exeErrorDiag": "",
[2026-01-09 07:19:41]     "pilotErrorCode": 0,
[2026-01-09 07:19:41]     "pilotErrorDiag": "",
[2026-01-09 07:19:41]  *** Listing of results directory ***
[2026-01-09 07:19:41] total 444600
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:19 pilot3.tar.gz
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:22 queuedata.json
[2026-01-09 07:19:41] -rwx------ 1 boinc boinc     36322 Jan  8 12:22 runpilot2-wrapper.sh
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc       100 Jan  9 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:19:41] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 06:05 run_atlas
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc       105 Jan  9 06:05 job.xml
[2026-01-09 07:19:41] -rw-r--r-- 2 boinc boinc     15847 Jan  9 06:05 start_atlas.sh
[2026-01-09 07:19:41] drwxrwx--x 2 boinc boinc      4096 Jan  9 06:05 shared
[2026-01-09 07:19:41] -rw-r--r-- 2 boinc boinc    592390 Jan  9 06:05 input.tar.gz
[2026-01-09 07:19:41] -rw-r--r-- 2 boinc boinc 226893573 Jan  9 06:05 EVNT.47898824._001003.pool.root.1
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc         0 Jan  9 06:05 boinc_setup_complete
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc      9416 Jan  9 06:05 init_data.xml
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc         0 Jan  9 06:05 boinc_lockfile
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc      2518 Jan  9 06:05 pandaJob.out
[2026-01-09 07:19:41] -rw------- 1 boinc boinc    989771 Jan  9 06:06 agis_schedconf.cvmfs.json
[2026-01-09 07:19:41] -rw------- 1 boinc boinc   1516240 Jan  9 06:06 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:19:41] drwx------ 5 boinc boinc      4096 Jan  9 06:06 pilot3
[2026-01-09 07:19:41] -rw------- 1 boinc boinc 222418830 Jan  9 07:18 HITS.47898826._025238.pool.root.1
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc       529 Jan  9 07:18 boinc_task_state.xml
[2026-01-09 07:19:41] -rw------- 1 boinc boinc      1027 Jan  9 07:18 memory_monitor_summary.json
[2026-01-09 07:19:41] -rw------- 1 boinc boinc    391526 Jan  9 07:18 log.47898826._025238.job.log.tgz.1
[2026-01-09 07:19:41] -rw------- 1 boinc boinc      7742 Jan  9 07:19 heartbeat.json
[2026-01-09 07:19:41] -rw------- 1 boinc boinc       823 Jan  9 07:19 pilotlog.txt
[2026-01-09 07:19:41] -rw------- 1 boinc boinc        95 Jan  9 07:19 pilot_heartbeat.json
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc      8192 Jan  9 07:19 boinc_mmap_file
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc        27 Jan  9 07:19 wrapper_checkpoint.txt
[2026-01-09 07:19:41] -rw------- 1 boinc boinc    630501 Jan  9 07:19 log.47898826._025238.job.log.1
[2026-01-09 07:19:41] -rw------- 1 boinc boinc       357 Jan  9 07:19 output.list
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc       620 Jan  9 07:19 runtime_log
[2026-01-09 07:19:41] -rw------- 1 boinc boinc   1044480 Jan  9 07:19 result.tar.gz
[2026-01-09 07:19:41] -rw------- 1 boinc boinc       644 Jan  9 07:19 weFKDmbD4x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwKfKDmwoCKim.diag
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc      8788 Jan  9 07:19 runtime_log.err
[2026-01-09 07:19:41] -rw-r--r-- 1 boinc boinc     21859 Jan  9 07:19 stderr.txt
[2026-01-09 07:19:41] HITS file was successfully produced:
[2026-01-09 07:19:41] -rw------- 1 boinc boinc 222418830 Jan  9 07:18 shared/HITS.pool.root.1
[2026-01-09 07:19:41]  *** Contents of shared directory: ***
[2026-01-09 07:19:41] total 440408
[2026-01-09 07:19:41] -rw-r--r-- 2 boinc boinc     15847 Jan  9 06:05 start_atlas.sh
[2026-01-09 07:19:41] -rw-r--r-- 2 boinc boinc    592390 Jan  9 06:05 input.tar.gz
[2026-01-09 07:19:41] -rw-r--r-- 2 boinc boinc 226893573 Jan  9 06:05 ATLAS.root_0
[2026-01-09 07:19:41] -rw------- 1 boinc boinc 222418830 Jan  9 07:18 HITS.pool.root.1
[2026-01-09 07:19:41] -rw------- 1 boinc boinc   1044480 Jan  9 07:19 result.tar.gz
07:19:43 (3526294): run_atlas exited; CPU time 47627.259472
07:19:43 (3526294): called boinc_finish(0)

</stderr_txt>
]]>

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