Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
05:38:04 (3467545): wrapper (7.7.26015): starting
05:38:04 (3467545): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 05:38:04] Arguments: --nthreads 12
[2026-01-09 05:38:04] Threads: 12
[2026-01-09 05:38:04] Checking for CVMFS
[2026-01-09 05:38:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:38:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:38:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:38:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:38:04] 2.11.0.0 331953 1280 94056 154933 1 253 5953564 6144001 12148 130560 0 17364121 99.999 52362 200 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-09 05:38:04] CVMFS is ok
[2026-01-09 05:38:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:38:04] Checking for apptainer binary...
[2026-01-09 05:38:04] apptainer is not installed, using version from CVMFS
[2026-01-09 05:38:04] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:38:05] radiat0r
[2026-01-09 05:38:05] apptainer works
[2026-01-09 05:38:05] Set ATHENA_PROC_NUMBER=12
[2026-01-09 05:38:05] Set ATHENA_CORE_NUMBER=12
[2026-01-09 05:38:05] Starting ATLAS job with PandaID=6963077065
[2026-01-09 05:38:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/30 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 06:42:50]  *** The last 200 lines of the pilot log: ***
[2026-01-09 06:42:50] 2026-01-09 06:42:05,160 | INFO     | PID=3477362 has CPU usage=16.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 06:42:50] 2026-01-09 06:42:05,160 | INFO     | .. there are 14 such processes running
[2026-01-09 06:42:50] 2026-01-09 06:42:06,161 | INFO     | time since job start (3825s) is within the limit (174528.0s)
[2026-01-09 06:42:50] 2026-01-09 06:42:07,154 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 06:42:50] 2026-01-09 06:42:08,169 | INFO     | time since job start (3827s) is within the limit (174528.0s)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,019 | WARNING  | process 3485627 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 06:42:50] 2026-01-09 06:42:09,021 | INFO     | using path: /var/lib/boinc/slots/30/PanDA_Pilot-6963077065/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,021 | INFO     | using path: /var/lib/boinc/slots/30/PanDA_Pilot-6963077065/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,022 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 06:42:50] 2026-01-09 06:42:09,022 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 06:42:50] 2026-01-09 06:42:09,022 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 198324 B
[2026-01-09 06:42:50] 2026-01-09 06:42:09,022 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4320393 B
[2026-01-09 06:42:50] 2026-01-09 06:42:09,022 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 13689 B
[2026-01-09 06:42:50] 2026-01-09 06:42:09,023 | INFO     | executing command: df -mP /var/lib/boinc/slots/30
[2026-01-09 06:42:50] 2026-01-09 06:42:09,052 | INFO     | sufficient remaining disk space (1694273372160 B)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,053 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,058 | INFO     | size of work directory /var/lib/boinc/slots/30/PanDA_Pilot-6963077065: 9341415 B (within 4404019200 B limit)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,058 | INFO     | pfn file=/var/lib/boinc/slots/30/PanDA_Pilot-6963077065/HITS.47947082._005324.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,058 | INFO     | total size of present files: 0 B (workdir size: 9341415 B)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,058 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/30/PanDA_Pilot-6963077065/HITS.47947082._005324.pool.root.1 since it does not exist
[2026-01-09 06:42:50] 2026-01-09 06:42:09,498 | INFO     | job 6963077065 has state=finished
[2026-01-09 06:42:50] 2026-01-09 06:42:09,498 | INFO     | preparing for final server update for job 6963077065 in state='finished'
[2026-01-09 06:42:50] 2026-01-09 06:42:09,499 | INFO     | this job has now completed (state=finished)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,499 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,499 | INFO     | log transfer has been attempted: DONE
[2026-01-09 06:42:50] 2026-01-09 06:42:09,500 | INFO     | job 6963077065 has finished - writing final server update
[2026-01-09 06:42:50] 2026-01-09 06:42:09,500 | INFO     | total number of processed events: 150 (read)
[2026-01-09 06:42:50] 2026-01-09 06:42:09,502 | INFO     | executing command: lscpu
[2026-01-09 06:42:50] 2026-01-09 06:42:09,708 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 06:42:50] 2026-01-09 06:42:09,872 | INFO     | number of running child processes to parent process 3485627: 1
[2026-01-09 06:42:50] 2026-01-09 06:42:09,873 | INFO     | maximum number of monitored processes: 17
[2026-01-09 06:42:50] 2026-01-09 06:42:10,175 | INFO     | time since job start (3829s) is within the limit (174528.0s)
[2026-01-09 06:42:50] 2026-01-09 06:42:12,181 | INFO     | time since job start (3831s) is within the limit (174528.0s)
[2026-01-09 06:42:50] 2026-01-09 06:42:12,376 | INFO     | monitor loop #265: job 0:6963077065 is in state 'finished'
[2026-01-09 06:42:50] 2026-01-09 06:42:12,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:42:50] 2026-01-09 06:42:14,187 | INFO     | time since job start (3833s) is within the limit (174528.0s)
[2026-01-09 06:42:50] 2026-01-09 06:42:14,879 | INFO     | monitor loop #266: job 0:6963077065 is in state 'finished'
[2026-01-09 06:42:50] 2026-01-09 06:42:14,880 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,099 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 06:42:50] 2026-01-09 06:42:16,162 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2396.1397382812506
[2026-01-09 06:42:50] 2026-01-09 06:42:16,193 | INFO     | time since job start (3835s) is within the limit (174528.0s)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,218 | INFO     | using path: /var/lib/boinc/slots/30/PanDA_Pilot-6963077065/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,219 | INFO     | extracted standard info from prmon json
[2026-01-09 06:42:50] 2026-01-09 06:42:16,219 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 06:42:50] 2026-01-09 06:42:16,220 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 06:42:50] 2026-01-09 06:42:16,222 | INFO     | fitting pss+swap vs Time
[2026-01-09 06:42:50] 2026-01-09 06:42:16,222 | INFO     | sum of square deviations: 54425545.714285694
[2026-01-09 06:42:50] 2026-01-09 06:42:16,222 | INFO     | sum of deviations: -6203980638.571428
[2026-01-09 06:42:50] 2026-01-09 06:42:16,222 | INFO     | mean x: 1767939119.4285715
[2026-01-09 06:42:50] 2026-01-09 06:42:16,223 | INFO     | mean y: 3112425.8571428573
[2026-01-09 06:42:50] 2026-01-09 06:42:16,223 | INFO     | intersect: 201530904626.36627
[2026-01-09 06:42:50] 2026-01-09 06:42:16,223 | INFO     | chi2: 1.2337687204887358
[2026-01-09 06:42:50] 2026-01-09 06:42:16,223 | INFO     | current memory leak: -113.99 B/s (using 56 data points, chi2=1.23)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,223 | INFO     | could have reported an average CPU frequency of 2408 MHz (6 samples)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | ..............................
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . Timing measurements:
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . get job = 0 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . initial setup = 3 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . payload setup = 9 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . stage-in = 0 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . payload execution = 3790 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . stage-out = 1 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | . log creation = 0 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,224 | INFO     | ..............................
[2026-01-09 06:42:50] 2026-01-09 06:42:16,326 | INFO     | 
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | job summary report
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | --------------------------------------------------
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | PanDA job id: 6963077065
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | task id: 47947082
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | errors: (none)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | pilot state: finished 
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | transexitcode: 0
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | exeerrorcode: 0
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | exeerrordiag: 
[2026-01-09 06:42:50] 2026-01-09 06:42:16,327 | INFO     | exitcode: 0
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | exitmsg: OK
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | cpuconsumptiontime: 39595 s
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | nevents: 150
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | neventsw: 0
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | pid: 3485627
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | pgrp: 3485627
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | corecount: 12
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | event service: False
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | sizes: {0: 2284553, 7: 2284815, 11: 2284843, 3803: 2310187, 3804: 2319183, 3807: 2319239, 3816: 2319641}
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | --------------------------------------------------
[2026-01-09 06:42:50] 2026-01-09 06:42:16,328 | INFO     | 
[2026-01-09 06:42:50] 2026-01-09 06:42:16,329 | INFO     | executing command: ls -lF /var/lib/boinc/slots/30
[2026-01-09 06:42:50] 2026-01-09 06:42:16,356 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,356 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,356 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,356 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,356 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,356 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,356 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,358 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 06:42:50] 2026-01-09 06:42:16,358 | INFO     | job 6963077065 has completed (purged errors)
[2026-01-09 06:42:50] 2026-01-09 06:42:16,358 | INFO     | overall cleanup function is called
[2026-01-09 06:42:50] 2026-01-09 06:42:17,381 | INFO     | --- collectZombieJob: --- 10, [3485627]
[2026-01-09 06:42:50] 2026-01-09 06:42:17,381 | INFO     | zombie collector waiting for pid 3485627
[2026-01-09 06:42:50] 2026-01-09 06:42:17,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 06:42:50] 2026-01-09 06:42:17,381 | INFO     | collected zombie processes
[2026-01-09 06:42:50] 2026-01-09 06:42:17,381 | INFO     | will attempt to kill all subprocesses of pid=3485627
[2026-01-09 06:42:50] 2026-01-09 06:42:18,062 | INFO     | process IDs to be killed: [3485627] (in reverse order)
[2026-01-09 06:42:50] 2026-01-09 06:42:18,325 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 06:42:50] 2026-01-09 06:42:18,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 06:42:50] 2026-01-09 06:42:18,355 | INFO     | did not find any defunct processes belonging to 3485627
[2026-01-09 06:42:50] 2026-01-09 06:42:18,383 | INFO     | did not find any defunct processes belonging to 3485627
[2026-01-09 06:42:50] 2026-01-09 06:42:18,384 | INFO     | ready for new job
[2026-01-09 06:42:50] 2026-01-09 06:42:18,384 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 06:42:50] 2026-01-09 06:42:18,386 | INFO     | ***************************************
[2026-01-09 06:42:50] 2026-01-09 06:42:18,386 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 06:42:50] 2026-01-09 06:42:18,386 | INFO     | ***************************************
[2026-01-09 06:42:50] 2026-01-09 06:42:18,386 | INFO     | 
[2026-01-09 06:42:50] 2026-01-09 06:42:18,422 | INFO     | architecture information:
[2026-01-09 06:42:50] 2026-01-09 06:42:18,423 | INFO     | executing command: cat /etc/os-release
[2026-01-09 06:42:50] 2026-01-09 06:42:18,447 | INFO     | cat /etc/os-release:
[2026-01-09 06:42:50] NAME="CentOS Linux"
[2026-01-09 06:42:50] VERSION="7 (Core)"
[2026-01-09 06:42:50] ID="centos"
[2026-01-09 06:42:50] ID_LIKE="rhel fedora"
[2026-01-09 06:42:50] VERSION_ID="7"
[2026-01-09 06:42:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 06:42:50] ANSI_COLOR="0;31"
[2026-01-09 06:42:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 06:42:50] HOME_URL="https://www.centos.org/"
[2026-01-09 06:42:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 06:42:50] 
[2026-01-09 06:42:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 06:42:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 06:42:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 06:42:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 06:42:50] 
[2026-01-09 06:42:50] 2026-01-09 06:42:18,447 | INFO     | ***************************************
[2026-01-09 06:42:50] 2026-01-09 06:42:18,948 | INFO     | executing command: df -mP /var/lib/boinc/slots/30
[2026-01-09 06:42:50] 2026-01-09 06:42:18,976 | INFO     | sufficient remaining disk space (1694281760768 B)
[2026-01-09 06:42:50] 2026-01-09 06:42:18,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 06:42:50] 2026-01-09 06:42:18,977 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 06:42:50] 2026-01-09 06:42:18,977 | INFO     | update_server=False
[2026-01-09 06:42:50] 2026-01-09 06:42:18,977 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 06:42:50] 2026-01-09 06:42:18,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:42:50] 2026-01-09 06:42:18,977 | INFO     | aborting loop
[2026-01-09 06:42:50] 2026-01-09 06:42:19,053 | INFO     | all payload control threads have been joined
[2026-01-09 06:42:50] 2026-01-09 06:42:19,658 | INFO     | all job control threads have been joined
[2026-01-09 06:42:50] 2026-01-09 06:42:19,739 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 06:42:50] 2026-01-09 06:42:19,740 | INFO     | all data control threads have been joined
[2026-01-09 06:42:50] 2026-01-09 06:42:19,980 | INFO     | [job] job monitor thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:19,982 | INFO     | [job] retrieve thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,056 | INFO     | [payload] control thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,060 | INFO     | [payload] validate_post thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,246 | INFO     | [payload] failed_post thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,460 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,664 | INFO     | [job] control thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,746 | INFO     | [data] control thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,764 | INFO     | [data] copytool_in thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:20,940 | INFO     | [job] validate thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:21,032 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:21,112 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:21,337 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 06:42:50] 2026-01-09 06:42:21,744 | INFO     | [data] copytool_out thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:22,264 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 06:42:50] 2026-01-09 06:42:22,340 | INFO     | [job] queue monitor thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:26,270 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:27,220 | INFO     | [monitor] cgroup control has ended
[2026-01-09 06:42:50] 2026-01-09 06:42:29,798 | INFO     | job.realtimelogging is not enabled
[2026-01-09 06:42:50] 2026-01-09 06:42:30,803 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 06:42:50] 2026-01-09 06:42:31,484 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140000642393920)>', '<ExcThread(monitor, started 140000196802304)>']
[2026-01-09 06:42:50] 2026-01-09 06:42:36,509 | INFO     | all workflow threads have been joined
[2026-01-09 06:42:50] 2026-01-09 06:42:36,509 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 06:42:50] 2026-01-09 06:42:36,510 | INFO     | traces error code: 0
[2026-01-09 06:42:50] 2026-01-09 06:42:36,510 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 06:42:50] 2026-01-09 06:42:50,252 | INFO     | PID=3477362 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 06:42:50] 2026-01-09 06:42:50,252 | INFO     | .. there are 14 such processes running
[2026-01-09 06:42:50] 2026-01-09 06:42:50,253 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 06:42:50] 2026-01-09 06:42:50,253 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 06:42:50] 2026-01-09 06:42:50,253 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 06:42:50] 2026-01-09 06:42:50,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 06:42:50] 2026-01-09 06:42:50,253 | INFO     | [monitor] control thread has ended
[2026-01-09 06:42:50] 2026-01-09 06:42:50,416 [wrapper] ==== pilot stdout END ====
[2026-01-09 06:42:50] 2026-01-09 06:42:50,420 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 06:42:50] 2026-01-09 06:42:50,424 [wrapper] pilotpid: 3477362
[2026-01-09 06:42:50] 2026-01-09 06:42:50,427 [wrapper] Pilot exit status: 0
[2026-01-09 06:42:50] 2026-01-09 06:42:50,441 [wrapper] pandaids: 6963077065
[2026-01-09 06:42:50] 2026-01-09 06:42:50,622 [wrapper] cleanup supervisor_pilot 3810698 3477363
[2026-01-09 06:42:50] 2026-01-09 06:42:50,626 [wrapper] Test setup, not cleaning
[2026-01-09 06:42:50] 2026-01-09 06:42:50,630 [wrapper] apfmon messages muted
[2026-01-09 06:42:50] 2026-01-09 06:42:50,634 [wrapper] ==== wrapper stdout END ====
[2026-01-09 06:42:50] 2026-01-09 06:42:50,637 [wrapper] ==== wrapper stderr END ====
[2026-01-09 06:42:50]  *** Error codes and diagnostics ***
[2026-01-09 06:42:50]     "exeErrorCode": 0,
[2026-01-09 06:42:50]     "exeErrorDiag": "",
[2026-01-09 06:42:50]     "pilotErrorCode": 0,
[2026-01-09 06:42:50]     "pilotErrorDiag": "",
[2026-01-09 06:42:50]  *** Listing of results directory ***
[2026-01-09 06:42:50] total 558416
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc    579449 Jan  8 11:09 pilot3.tar.gz
[2026-01-09 06:42:50] -rwx------ 1 boinc boinc     36322 Jan  8 11:57 runpilot2-wrapper.sh
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc      5112 Jan  8 11:57 queuedata.json
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc       100 Jan  9 05:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 06:42:50] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 05:38 run_atlas
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc       105 Jan  9 05:38 job.xml
[2026-01-09 06:42:50] -rw-r--r-- 2 boinc boinc 414398668 Jan  9 05:38 EVNT.47947080._000147.pool.root.1
[2026-01-09 06:42:50] -rw-r--r-- 2 boinc boinc     15847 Jan  9 05:38 start_atlas.sh
[2026-01-09 06:42:50] drwxrwx--x 2 boinc boinc      4096 Jan  9 05:38 shared
[2026-01-09 06:42:50] -rw-r--r-- 2 boinc boinc    592615 Jan  9 05:38 input.tar.gz
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc      9416 Jan  9 05:38 init_data.xml
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc         0 Jan  9 05:38 boinc_setup_complete
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc         0 Jan  9 05:38 boinc_lockfile
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc      2877 Jan  9 05:38 pandaJob.out
[2026-01-09 06:42:50] -rw------- 1 boinc boinc    989771 Jan  9 05:38 agis_schedconf.cvmfs.json
[2026-01-09 06:42:50] -rw------- 1 boinc boinc   1516240 Jan  9 05:38 agis_ddmendpoints.agis.ALL.json
[2026-01-09 06:42:50] drwx------ 5 boinc boinc      4096 Jan  9 05:38 pilot3
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc       529 Jan  9 06:34 boinc_task_state.xml
[2026-01-09 06:42:50] -rw------- 1 boinc boinc 149044181 Jan  9 06:41 HITS.47947082._005324.pool.root.1
[2026-01-09 06:42:50] -rw------- 1 boinc boinc      1034 Jan  9 06:41 memory_monitor_summary.json
[2026-01-09 06:42:50] -rw------- 1 boinc boinc   1658029 Jan  9 06:42 log.47947082._005324.job.log.tgz.1
[2026-01-09 06:42:50] -rw------- 1 boinc boinc      7864 Jan  9 06:42 heartbeat.json
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc        27 Jan  9 06:42 wrapper_checkpoint.txt
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc      8192 Jan  9 06:42 boinc_mmap_file
[2026-01-09 06:42:50] -rw------- 1 boinc boinc       823 Jan  9 06:42 pilotlog.txt
[2026-01-09 06:42:50] -rw------- 1 boinc boinc        95 Jan  9 06:42 pilot_heartbeat.json
[2026-01-09 06:42:50] -rw------- 1 boinc boinc    571098 Jan  9 06:42 log.47947082._005324.job.log.1
[2026-01-09 06:42:50] -rw------- 1 boinc boinc       353 Jan  9 06:42 output.list
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc       620 Jan  9 06:42 runtime_log
[2026-01-09 06:42:50] -rw------- 1 boinc boinc   2252800 Jan  9 06:42 result.tar.gz
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc      8788 Jan  9 06:42 runtime_log.err
[2026-01-09 06:42:50] -rw------- 1 boinc boinc       644 Jan  9 06:42 ikSLDmZo3x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAIfKDmnaVqPn.diag
[2026-01-09 06:42:50] -rw-r--r-- 1 boinc boinc     22364 Jan  9 06:42 stderr.txt
[2026-01-09 06:42:50] HITS file was successfully produced:
[2026-01-09 06:42:50] -rw------- 1 boinc boinc 149044181 Jan  9 06:41 shared/HITS.pool.root.1
[2026-01-09 06:42:50]  *** Contents of shared directory: ***
[2026-01-09 06:42:50] total 553044
[2026-01-09 06:42:50] -rw-r--r-- 2 boinc boinc 414398668 Jan  9 05:38 ATLAS.root_0
[2026-01-09 06:42:50] -rw-r--r-- 2 boinc boinc     15847 Jan  9 05:38 start_atlas.sh
[2026-01-09 06:42:50] -rw-r--r-- 2 boinc boinc    592615 Jan  9 05:38 input.tar.gz
[2026-01-09 06:42:50] -rw------- 1 boinc boinc 149044181 Jan  9 06:41 HITS.pool.root.1
[2026-01-09 06:42:50] -rw------- 1 boinc boinc   2252800 Jan  9 06:42 result.tar.gz
06:42:52 (3467545): run_atlas exited; CPU time 39647.672509
06:42:52 (3467545): called boinc_finish(0)

</stderr_txt>
]]>

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