Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:09 (18238): wrapper (7.7.26015): starting
00:13:09 (18238): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:13:09] Arguments: --nthreads 12
[2026-01-09 00:13:09] Threads: 12
[2026-01-09 00:13:09] Checking for CVMFS
[2026-01-09 00:13:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:13:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:13:10] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:13:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:13:10] 2.11.2.0 2947 350560 97872 154932 3 1 16679301 20275200 1 130560 1 148947347 99.957 20283684 14641 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:13:10] CVMFS is ok
[2026-01-09 00:13:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:13:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:13:10] Further information can be found at the LHC@home message board.
[2026-01-09 00:13:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:13:10] Checking for apptainer binary...
[2026-01-09 00:13:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:13:10] Running /usr/bin/apptainer --version
[2026-01-09 00:13:10] apptainer version 1.3.2-1.el7
[2026-01-09 00:13:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:13:11] c-205-18.aglt2.org
[2026-01-09 00:13:11] apptainer works
[2026-01-09 00:13:11] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:13:11] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:13:11] Starting ATLAS job with PandaID=6963077075
[2026-01-09 00:13:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 01:45:43]  *** The last 200 lines of the pilot log: ***
[2026-01-09 01:45:43]  mtime=0
[2026-01-09 01:45:43]  protocol_id=None
[2026-01-09 01:45:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 01:45:43]  replicas=None
[2026-01-09 01:45:43]  scope=mc16_13TeV
[2026-01-09 01:45:43]  status=None
[2026-01-09 01:45:43]  status_code=0
[2026-01-09 01:45:43]  storage_token=
[2026-01-09 01:45:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963077075/log.47947082._005334.job.log.tgz.1
[2026-01-09 01:45:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/f5/c3/log.47947082._005334.job.log.tgz.1
[2026-01-09 01:45:43]  workdir=None
[2026-01-09 01:45:43] ]
[2026-01-09 01:45:43] 2026-01-09 06:44:38,467 | INFO     | transferring file log.47947082._005334.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963077075/log.47947082._005334.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 01:45:43] 2026-01-09 06:44:38,467 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963077075/log.47947082._005334.job.log.tgz.1 /tmp/boinchome/slots/0/log.47947082._005334.job
[2026-01-09 01:45:43] 2026-01-09 06:44:38,489 | INFO     | adding to output.list: log.47947082._005334.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/f5/c3/log.47947082._005334.job.log.tgz.
[2026-01-09 01:45:43] 2026-01-09 06:44:38,489 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 01:45:43] 2026-01-09 06:44:38,490 | INFO     | summary of transferred files:
[2026-01-09 01:45:43] 2026-01-09 06:44:38,490 | INFO     |  -- lfn=log.47947082._005334.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 01:45:43] 2026-01-09 06:44:38,490 | INFO     | stage-out finished correctly
[2026-01-09 01:45:43] 2026-01-09 06:44:38,542 | INFO     | time since job start (5470s) is within the limit (174528.0s)
[2026-01-09 01:45:43] 2026-01-09 06:44:39,128 | INFO     | monitor loop #415: job 0:6963077075 is in state 'finished'
[2026-01-09 01:45:43] 2026-01-09 06:44:39,128 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 01:45:43] 2026-01-09 06:44:39,768 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 01:45:43] 2026-01-09 06:44:40,385 | INFO     | job 6963077075 has state=finished
[2026-01-09 01:45:43] 2026-01-09 06:44:40,385 | INFO     | preparing for final server update for job 6963077075 in state='finished'
[2026-01-09 01:45:43] 2026-01-09 06:44:40,386 | INFO     | this job has now completed (state=finished)
[2026-01-09 01:45:43] 2026-01-09 06:44:40,386 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 01:45:43] 2026-01-09 06:44:40,386 | INFO     | log transfer has been attempted: DONE
[2026-01-09 01:45:43] 2026-01-09 06:44:40,386 | INFO     | job 6963077075 has finished - writing final server update
[2026-01-09 01:45:43] 2026-01-09 06:44:40,387 | INFO     | total number of processed events: 150 (read)
[2026-01-09 01:45:43] 2026-01-09 06:44:40,387 | INFO     | executing command: lscpu
[2026-01-09 01:45:43] 2026-01-09 06:44:40,412 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 01:45:43] 2026-01-09 06:44:40,553 | INFO     | time since job start (5472s) is within the limit (174528.0s)
[2026-01-09 01:45:43] 2026-01-09 06:44:41,631 | INFO     | monitor loop #416: job 0:6963077075 is in state 'finished'
[2026-01-09 01:45:43] 2026-01-09 06:44:41,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 01:45:43] 2026-01-09 06:44:41,674 | INFO     | PID=22284 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 01:45:43] 2026-01-09 06:44:42,675 | INFO     | time since job start (5474s) is within the limit (174528.0s)
[2026-01-09 01:45:43] 2026-01-09 06:44:44,135 | INFO     | monitor loop #417: job 0:6963077075 is in state 'finished'
[2026-01-09 01:45:43] 2026-01-09 06:44:44,135 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 01:45:43] 2026-01-09 06:44:44,680 | INFO     | time since job start (5476s) is within the limit (174528.0s)
[2026-01-09 01:45:43] 2026-01-09 06:44:45,140 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 01:45:43] 2026-01-09 06:44:45,144 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2026-01-09 01:45:43] 2026-01-09 06:44:45,146 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963077075/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 01:45:43] 2026-01-09 06:44:45,147 | INFO     | extracted standard info from prmon json
[2026-01-09 01:45:43] 2026-01-09 06:44:45,147 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 01:45:43] 2026-01-09 06:44:45,147 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 01:45:43] 2026-01-09 06:44:45,150 | INFO     | fitting pss+swap vs Time
[2026-01-09 01:45:43] 2026-01-09 06:44:45,150 | INFO     | sum of square deviations: 177279675.63855428
[2026-01-09 01:45:43] 2026-01-09 06:44:45,150 | INFO     | sum of deviations: -14097970028.87952
[2026-01-09 01:45:43] 2026-01-09 06:44:45,150 | INFO     | mean x: 1767938446.1686747
[2026-01-09 01:45:43] 2026-01-09 06:44:45,151 | INFO     | mean y: 3041732.2771084337
[2026-01-09 01:45:43] 2026-01-09 06:44:45,151 | INFO     | intersect: 140596390277.24323
[2026-01-09 01:45:43] 2026-01-09 06:44:45,151 | INFO     | chi2: 2.0849595156449565
[2026-01-09 01:45:43] 2026-01-09 06:44:45,151 | INFO     | current memory leak: -79.52 B/s (using 83 data points, chi2=2.08)
[2026-01-09 01:45:43] 2026-01-09 06:44:45,151 | INFO     | could have reported an average CPU frequency of 2017 MHz (7 samples)
[2026-01-09 01:45:43] 2026-01-09 06:44:45,151 | INFO     | ..............................
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . Timing measurements:
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . get job = 0 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . initial setup = 2 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . payload setup = 9 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . stage-in = 0 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . payload execution = 5439 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . stage-out = 0 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | . log creation = 0 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,152 | INFO     | ..............................
[2026-01-09 01:45:43] 2026-01-09 06:44:45,499 | INFO     | 
[2026-01-09 01:45:43] 2026-01-09 06:44:45,500 | INFO     | job summary report
[2026-01-09 01:45:43] 2026-01-09 06:44:45,500 | INFO     | --------------------------------------------------
[2026-01-09 01:45:43] 2026-01-09 06:44:45,500 | INFO     | PanDA job id: 6963077075
[2026-01-09 01:45:43] 2026-01-09 06:44:45,500 | INFO     | task id: 47947082
[2026-01-09 01:45:43] 2026-01-09 06:44:45,500 | INFO     | errors: (none)
[2026-01-09 01:45:43] 2026-01-09 06:44:45,500 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 01:45:43] 2026-01-09 06:44:45,501 | INFO     | pilot state: finished 
[2026-01-09 01:45:43] 2026-01-09 06:44:45,501 | INFO     | transexitcode: 0
[2026-01-09 01:45:43] 2026-01-09 06:44:45,501 | INFO     | exeerrorcode: 0
[2026-01-09 01:45:43] 2026-01-09 06:44:45,501 | INFO     | exeerrordiag: 
[2026-01-09 01:45:43] 2026-01-09 06:44:45,501 | INFO     | exitcode: 0
[2026-01-09 01:45:43] 2026-01-09 06:44:45,501 | INFO     | exitmsg: OK
[2026-01-09 01:45:43] 2026-01-09 06:44:45,502 | INFO     | cpuconsumptiontime: 56309 s
[2026-01-09 01:45:43] 2026-01-09 06:44:45,502 | INFO     | nevents: 150
[2026-01-09 01:45:43] 2026-01-09 06:44:45,502 | INFO     | neventsw: 0
[2026-01-09 01:45:43] 2026-01-09 06:44:45,502 | INFO     | pid: 28656
[2026-01-09 01:45:43] 2026-01-09 06:44:45,502 | INFO     | pgrp: 28656
[2026-01-09 01:45:43] 2026-01-09 06:44:45,502 | INFO     | corecount: 12
[2026-01-09 01:45:43] 2026-01-09 06:44:45,502 | INFO     | event service: False
[2026-01-09 01:45:43] 2026-01-09 06:44:45,503 | INFO     | sizes: {0: 2284552, 5: 2284814, 11: 2284870, 5452: 2312317, 5453: 2312316, 5454: 2321366, 5455: 2321550, 5460: 2321796}
[2026-01-09 01:45:43] 2026-01-09 06:44:45,503 | INFO     | --------------------------------------------------
[2026-01-09 01:45:43] 2026-01-09 06:44:45,503 | INFO     | 
[2026-01-09 01:45:43] 2026-01-09 06:44:45,503 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 01:45:43] 2026-01-09 06:44:45,529 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,529 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,529 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,529 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,530 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,531 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,531 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,532 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 01:45:43] 2026-01-09 06:44:45,532 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,532 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 01:45:43] 2026-01-09 06:44:45,532 | INFO     | job 6963077075 has completed (purged errors)
[2026-01-09 01:45:43] 2026-01-09 06:44:45,532 | INFO     | overall cleanup function is called
[2026-01-09 01:45:43] 2026-01-09 06:44:46,549 | INFO     | --- collectZombieJob: --- 10, [28656]
[2026-01-09 01:45:43] 2026-01-09 06:44:46,549 | INFO     | zombie collector waiting for pid 28656
[2026-01-09 01:45:43] 2026-01-09 06:44:46,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 01:45:43] 2026-01-09 06:44:46,549 | INFO     | collected zombie processes
[2026-01-09 01:45:43] 2026-01-09 06:44:46,549 | INFO     | will attempt to kill all subprocesses of pid=28656
[2026-01-09 01:45:43] 2026-01-09 06:44:46,639 | INFO     | process IDs to be killed: [28656] (in reverse order)
[2026-01-09 01:45:43] 2026-01-09 06:44:46,694 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 01:45:43] 2026-01-09 06:44:46,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 01:45:43] 2026-01-09 06:44:46,698 | INFO     | did not find any defunct processes belonging to 28656
[2026-01-09 01:45:43] 2026-01-09 06:44:46,700 | INFO     | did not find any defunct processes belonging to 28656
[2026-01-09 01:45:43] 2026-01-09 06:44:46,701 | INFO     | ready for new job
[2026-01-09 01:45:43] 2026-01-09 06:44:46,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 01:45:43] 2026-01-09 06:44:46,702 | INFO     | ***************************************
[2026-01-09 01:45:43] 2026-01-09 06:44:46,702 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 01:45:43] 2026-01-09 06:44:46,702 | INFO     | ***************************************
[2026-01-09 01:45:43] 2026-01-09 06:44:46,702 | INFO     | 
[2026-01-09 01:45:43] 2026-01-09 06:44:46,703 | INFO     | architecture information:
[2026-01-09 01:45:43] 2026-01-09 06:44:46,704 | INFO     | executing command: cat /etc/os-release
[2026-01-09 01:45:43] 2026-01-09 06:44:46,719 | INFO     | cat /etc/os-release:
[2026-01-09 01:45:43] NAME="CentOS Linux"
[2026-01-09 01:45:43] VERSION="7 (Core)"
[2026-01-09 01:45:43] ID="centos"
[2026-01-09 01:45:43] ID_LIKE="rhel fedora"
[2026-01-09 01:45:43] VERSION_ID="7"
[2026-01-09 01:45:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 01:45:43] ANSI_COLOR="0;31"
[2026-01-09 01:45:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 01:45:43] HOME_URL="https://www.centos.org/"
[2026-01-09 01:45:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 01:45:43] 
[2026-01-09 01:45:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 01:45:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 01:45:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 01:45:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 01:45:43] 
[2026-01-09 01:45:43] 2026-01-09 06:44:46,720 | INFO     | ***************************************
[2026-01-09 01:45:43] 2026-01-09 06:44:47,223 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 01:45:43] 2026-01-09 06:44:47,239 | INFO     | sufficient remaining disk space (28999417856 B)
[2026-01-09 01:45:43] 2026-01-09 06:44:47,240 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 01:45:43] 2026-01-09 06:44:47,240 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 01:45:43] 2026-01-09 06:44:47,240 | INFO     | update_server=False
[2026-01-09 01:45:43] 2026-01-09 06:44:47,240 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 01:45:43] 2026-01-09 06:44:47,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 01:45:43] 2026-01-09 06:44:47,442 | INFO     | all data control threads have been joined
[2026-01-09 01:45:43] 2026-01-09 06:44:47,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 01:45:43] 2026-01-09 06:44:47,644 | INFO     | aborting loop
[2026-01-09 01:45:43] 2026-01-09 06:44:48,219 | INFO     | all job control threads have been joined
[2026-01-09 01:45:43] 2026-01-09 06:44:48,246 | INFO     | [job] retrieve thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:48,375 | INFO     | all payload control threads have been joined
[2026-01-09 01:45:43] 2026-01-09 06:44:48,422 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:48,422 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:48,448 | INFO     | [data] control thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:48,649 | INFO     | [job] job monitor thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:48,821 | INFO     | [payload] failed_post thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:48,857 | INFO     | [data] copytool_in thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:48,932 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:49,225 | INFO     | [job] control thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:49,246 | INFO     | [data] copytool_out thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:49,380 | INFO     | [payload] control thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:49,506 | INFO     | [job] validate thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:49,712 | INFO     | [payload] validate_post thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:50,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 01:45:43] 2026-01-09 06:44:50,357 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 01:45:43] 2026-01-09 06:44:51,248 | INFO     | [job] queue monitor thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:54,363 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:44:58,052 | INFO     | job.realtimelogging is not enabled
[2026-01-09 01:45:43] 2026-01-09 06:44:59,058 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 01:45:43] 2026-01-09 06:45:17,883 | INFO     | PID=22284 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 01:45:43] 2026-01-09 06:45:17,883 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 01:45:43] 2026-01-09 06:45:17,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 01:45:43] 2026-01-09 06:45:17,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 01:45:43] 2026-01-09 06:45:36,973 | INFO     | [monitor] cgroup control has ended
[2026-01-09 01:45:43] 2026-01-09 06:45:38,089 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053105313600)>', '<ExcThread(monitor, started 140052667541248)>']
[2026-01-09 01:45:43] 2026-01-09 06:45:38,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 01:45:43] 2026-01-09 06:45:38,990 | INFO     | [monitor] control thread has ended
[2026-01-09 01:45:43] 2026-01-09 06:45:43,090 | INFO     | all workflow threads have been joined
[2026-01-09 01:45:43] 2026-01-09 06:45:43,090 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 01:45:43] 2026-01-09 06:45:43,090 | INFO     | traces error code: 0
[2026-01-09 01:45:43] 2026-01-09 06:45:43,091 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 01:45:43] 2026-01-09 06:45:43,177 [wrapper] ==== pilot stdout END ====
[2026-01-09 01:45:43] 2026-01-09 06:45:43,181 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 01:45:43] 2026-01-09 06:45:43,184 [wrapper] pilotpid: 22284
[2026-01-09 01:45:43] 2026-01-09 06:45:43,188 [wrapper] Pilot exit status: 0
[2026-01-09 01:45:43] 2026-01-09 06:45:43,203 [wrapper] pandaids: 6963077075
[2026-01-09 01:45:43] 2026-01-09 06:45:43,250 [wrapper] cleanup supervisor_pilot 29902 22285
[2026-01-09 01:45:43] 2026-01-09 06:45:43,254 [wrapper] Test setup, not cleaning
[2026-01-09 01:45:43] 2026-01-09 06:45:43,258 [wrapper] apfmon messages muted
[2026-01-09 01:45:43] 2026-01-09 06:45:43,262 [wrapper] ==== wrapper stdout END ====
[2026-01-09 01:45:43] 2026-01-09 06:45:43,266 [wrapper] ==== wrapper stderr END ====
[2026-01-09 01:45:43]  *** Error codes and diagnostics ***
[2026-01-09 01:45:43]     "exeErrorCode": 0,
[2026-01-09 01:45:43]     "exeErrorDiag": "",
[2026-01-09 01:45:43]     "pilotErrorCode": 0,
[2026-01-09 01:45:43]     "pilotErrorDiag": "",
[2026-01-09 01:45:43]  *** Listing of results directory ***
[2026-01-09 01:45:43] total 559716
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-09 01:45:43] -rwx------ 1 boincer umatlas     36322 Jan  8 06:57 runpilot2-wrapper.sh
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 06:57 queuedata.json
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas       100 Jan  9 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 01:45:43] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 00:13 run_atlas
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas       105 Jan  9 00:13 job.xml
[2026-01-09 01:45:43] -rw-r--r-- 2 boincer umatlas 417709010 Jan  9 00:13 EVNT.47947080._000150.pool.root.1
[2026-01-09 01:45:43] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:13 start_atlas.sh
[2026-01-09 01:45:43] drwxrwx--x 2 boincer umatlas      4096 Jan  9 00:13 shared
[2026-01-09 01:45:43] -rw-r--r-- 2 boincer umatlas    592613 Jan  9 00:13 input.tar.gz
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas         0 Jan  9 00:13 boinc_lockfile
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas      2877 Jan  9 00:13 pandaJob.out
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas        57 Jan  9 00:13 setup.sh.local
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas    989771 Jan  9 00:13 agis_schedconf.cvmfs.json
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas   1516240 Jan  9 00:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 01:45:43] drwx------ 5 boincer umatlas      4096 Jan  9 00:13 pilot3
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas       529 Jan  9 01:33 boinc_task_state.xml
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas 146568909 Jan  9 01:44 HITS.47947082._005334.pool.root.1
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas        95 Jan  9 01:44 pilot_heartbeat.json
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas      1055 Jan  9 01:44 memory_monitor_summary.json
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas   1672016 Jan  9 01:44 log.47947082._005334.job.log.tgz.1
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas      8634 Jan  9 01:44 heartbeat.json
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas      5952 Jan  9 01:45 init_data.xml
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 01:45 boinc_mmap_file
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas        27 Jan  9 01:45 wrapper_checkpoint.txt
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas      4818 Jan  9 01:45 pilotlog.txt
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas    806521 Jan  9 01:45 log.47947082._005334.job.log.1
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas       353 Jan  9 01:45 output.list
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas       620 Jan  9 01:45 runtime_log
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas   2498560 Jan  9 01:45 result.tar.gz
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 01:45 runtime_log.err
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas       663 Jan  9 01:45 agkLDmZo3x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJIfKDm27aojm.diag
[2026-01-09 01:45:43] -rw-r--r-- 1 boincer umatlas     21892 Jan  9 01:45 stderr.txt
[2026-01-09 01:45:43] HITS file was successfully produced:
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas 146568909 Jan  9 01:44 shared/HITS.pool.root.1
[2026-01-09 01:45:43]  *** Contents of shared directory: ***
[2026-01-09 01:45:43] total 554092
[2026-01-09 01:45:43] -rw-r--r-- 2 boincer umatlas 417709010 Jan  9 00:13 ATLAS.root_0
[2026-01-09 01:45:43] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:13 start_atlas.sh
[2026-01-09 01:45:43] -rw-r--r-- 2 boincer umatlas    592613 Jan  9 00:13 input.tar.gz
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas 146568909 Jan  9 01:44 HITS.pool.root.1
[2026-01-09 01:45:43] -rw------- 1 boincer umatlas   2498560 Jan  9 01:45 result.tar.gz
01:45:45 (18238): run_atlas exited; CPU time 55237.038183
01:45:45 (18238): called boinc_finish(0)

</stderr_txt>
]]>

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