Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:30 (294356): wrapper (7.7.26015): starting
00:10:30 (294356): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 00:10:30] Arguments: --nthreads 8
[2026-01-09 00:10:30] Threads: 8
[2026-01-09 00:10:30] Checking for CVMFS
[2026-01-09 00:10:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:10:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:10:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:10:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:10:32] 2.13.3.0 7976 21073 205440 154932 2 69 36226211 40960000 7921 16776704 0 11403446 99.953 11441388 29539 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:10:32] CVMFS is ok
[2026-01-09 00:10:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:10:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:10:32] Further information can be found at the LHC@home message board.
[2026-01-09 00:10:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:10:32] Checking for apptainer binary...
[2026-01-09 00:10:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:10:32] Running /usr/bin/apptainer --version
[2026-01-09 00:10:33] apptainer version 1.4.5-2.el9
[2026-01-09 00:10:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:10:34] c-211-13.aglt2.org
[2026-01-09 00:10:34] apptainer works
[2026-01-09 00:10:34] Set ATHENA_PROC_NUMBER=8
[2026-01-09 00:10:34] Set ATHENA_CORE_NUMBER=8
[2026-01-09 00:10:35] Starting ATLAS job with PandaID=6963077037
[2026-01-09 00:10:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:40:05 (294356): BOINC client no longer exists - exiting
12:40:05 (294356): timer handler: client dead, exiting
12:45:18 (1641566): wrapper (7.7.26015): starting
12:45:18 (1641566): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 12:45:18] Arguments: --nthreads 8
[2026-01-09 12:45:18] Threads: 8
[2026-01-09 12:45:18] This job has been restarted, cleaning up previous attempt
[2026-01-09 12:45:18] Checking for CVMFS
[2026-01-09 12:45:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:45:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:45:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:45:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:45:20] 2.13.3.0 7976 21828 204732 154951 3 64 37281830 40960001 8218 16776704 0 12586366 99.953 11466041 29533 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 12:45:20] CVMFS is ok
[2026-01-09 12:45:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:45:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:45:20] Further information can be found at the LHC@home message board.
[2026-01-09 12:45:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:45:20] Checking for apptainer binary...
[2026-01-09 12:45:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:45:20] Running /usr/bin/apptainer --version
[2026-01-09 12:45:20] apptainer version 1.4.5-2.el9
[2026-01-09 12:45:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:45:20] c-211-13.aglt2.org
[2026-01-09 12:45:20] apptainer works
[2026-01-09 12:45:20] Set ATHENA_PROC_NUMBER=8
[2026-01-09 12:45:20] Set ATHENA_CORE_NUMBER=8
[2026-01-09 12:45:20] Starting ATLAS job with PandaID=6963077037
[2026-01-09 12:45:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:02:42]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:02:42] 2026-01-10 01:02:07,885 | INFO     | extracted standard info from prmon json
[2026-01-09 20:02:42] 2026-01-10 01:02:07,885 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:02:42] 2026-01-10 01:02:07,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:02:42] 2026-01-10 01:02:07,900 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:02:42] 2026-01-10 01:02:07,901 | INFO     | sum of square deviations: 24304353375.626095
[2026-01-09 20:02:42] 2026-01-10 01:02:07,931 | INFO     | sum of deviations: 194177985179.82242
[2026-01-09 20:02:42] 2026-01-10 01:02:07,941 | INFO     | mean x: 1767993852.411215
[2026-01-09 20:02:42] 2026-01-10 01:02:07,942 | INFO     | mean y: 2630198.745327103
[2026-01-09 20:02:42] 2026-01-10 01:02:07,942 | INFO     | intersect: -14122636940.260725
[2026-01-09 20:02:42] 2026-01-10 01:02:07,942 | INFO     | chi2: 9.08978760881179
[2026-01-09 20:02:42] 2026-01-10 01:02:07,943 | INFO     | sum of square deviations: 23462745753.234024
[2026-01-09 20:02:42] 2026-01-10 01:02:07,969 | INFO     | sum of deviations: 329889656510.12775
[2026-01-09 20:02:42] 2026-01-10 01:02:07,969 | INFO     | mean x: 1767993699.9574468
[2026-01-09 20:02:42] 2026-01-10 01:02:07,969 | INFO     | mean y: 2654775.451536643
[2026-01-09 20:02:42] 2026-01-10 01:02:07,969 | INFO     | intersect: -24855596706.502136
[2026-01-09 20:02:42] 2026-01-10 01:02:07,992 | INFO     | chi2: 5.681586261024526
[2026-01-09 20:02:42] 2026-01-10 01:02:07,993 | INFO     | current chi2=5.681586261024526 (change=37.49484030279538 %)
[2026-01-09 20:02:42] 2026-01-10 01:02:07,993 | INFO     | sum of square deviations: 22640735770.497597
[2026-01-09 20:02:42] 2026-01-10 01:02:08,015 | INFO     | sum of deviations: 412578397320.60284
[2026-01-09 20:02:42] 2026-01-10 01:02:08,015 | INFO     | mean x: 1767993547.4976077
[2026-01-09 20:02:42] 2026-01-10 01:02:08,015 | INFO     | mean y: 2670051.1028708136
[2026-01-09 20:02:42] 2026-01-10 01:02:08,016 | INFO     | intersect: -32215185043.970245
[2026-01-09 20:02:42] 2026-01-10 01:02:08,016 | INFO     | chi2: 3.880654785318454
[2026-01-09 20:02:42] 2026-01-10 01:02:08,016 | INFO     | current chi2=3.880654785318454 (change=31.697687810539744 %)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,042 | INFO     | sum of square deviations: 21838090186.590576
[2026-01-09 20:02:42] 2026-01-10 01:02:08,047 | INFO     | sum of deviations: 428578203933.0148
[2026-01-09 20:02:42] 2026-01-10 01:02:08,047 | INFO     | mean x: 1767993395.031477
[2026-01-09 20:02:42] 2026-01-10 01:02:08,047 | INFO     | mean y: 2673075.8450363195
[2026-01-09 20:02:42] 2026-01-10 01:02:08,048 | INFO     | intersect: -34694657475.21636
[2026-01-09 20:02:42] 2026-01-10 01:02:08,048 | INFO     | chi2: 3.7420391159745066
[2026-01-09 20:02:42] 2026-01-10 01:02:08,049 | INFO     | current chi2=3.7420391159745066 (change=3.571965995748124 %)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,049 | INFO     | right removable region: 412
[2026-01-09 20:02:42] 2026-01-10 01:02:08,049 | INFO     | sum of square deviations: 23461724613.234055
[2026-01-09 20:02:42] 2026-01-10 01:02:08,054 | INFO     | sum of deviations: 56119832091.91498
[2026-01-09 20:02:42] 2026-01-10 01:02:08,054 | INFO     | mean x: 1767994004.9574468
[2026-01-09 20:02:42] 2026-01-10 01:02:08,054 | INFO     | mean y: 2655165.8841607566
[2026-01-09 20:02:42] 2026-01-10 01:02:08,055 | INFO     | intersect: -4226340286.639285
[2026-01-09 20:02:42] 2026-01-10 01:02:08,055 | INFO     | chi2: 5.845362498833708
[2026-01-09 20:02:42] 2026-01-10 01:02:08,056 | INFO     | current chi2=5.845362498833708 (change=35.69307941621081 %)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,056 | INFO     | sum of square deviations: 22639053406.30646
[2026-01-09 20:02:42] 2026-01-10 01:02:08,061 | INFO     | sum of deviations: 17779073471.803844
[2026-01-09 20:02:42] 2026-01-10 01:02:08,061 | INFO     | mean x: 1767994157.478469
[2026-01-09 20:02:42] 2026-01-10 01:02:08,061 | INFO     | mean y: 2662239.7559808614
[2026-01-09 20:02:42] 2026-01-10 01:02:08,061 | INFO     | intersect: -1385792368.2787085
[2026-01-09 20:02:42] 2026-01-10 01:02:08,062 | INFO     | chi2: 5.493715836755379
[2026-01-09 20:02:42] 2026-01-10 01:02:08,062 | INFO     | current chi2=5.493715836755379 (change=6.015823007529331 %)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,062 | INFO     | left removable region: 20
[2026-01-09 20:02:42] 2026-01-10 01:02:08,063 | INFO     | sum of square deviations: 18671611531.364624
[2026-01-09 20:02:42] 2026-01-10 01:02:08,067 | INFO     | sum of deviations: 228631030436.18134
[2026-01-09 20:02:42] 2026-01-10 01:02:08,067 | INFO     | mean x: 1767993974.6301022
[2026-01-09 20:02:42] 2026-01-10 01:02:08,068 | INFO     | mean y: 2711749.2219387754
[2026-01-09 20:02:42] 2026-01-10 01:02:08,068 | INFO     | intersect: -21646104344.966454
[2026-01-09 20:02:42] 2026-01-10 01:02:08,068 | INFO     | chi2: 0.022503107103599197
[2026-01-09 20:02:42] 2026-01-10 01:02:08,069 | INFO     | current memory leak: 12.24 B/s (using 392 data points, chi2=0.02)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,069 | INFO     | could have reported an average CPU frequency of 2712 MHz (18 samples)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | ..............................
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . Timing measurements:
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . get job = 0 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . initial setup = 4 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . payload setup = 25 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . stage-in = 0 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . payload execution = 26076 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . stage-out = 3 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,070 | INFO     | . log creation = 0 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,071 | INFO     | ..............................
[2026-01-09 20:02:42] 2026-01-10 01:02:08,180 | INFO     | 
[2026-01-09 20:02:42] 2026-01-10 01:02:08,180 | INFO     | job summary report
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | --------------------------------------------------
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | PanDA job id: 6963077037
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | task id: 47947082
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | errors: (none)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | pilot state: finished 
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | transexitcode: 0
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | exeerrorcode: 0
[2026-01-09 20:02:42] 2026-01-10 01:02:08,181 | INFO     | exeerrordiag: 
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | exitcode: 0
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | exitmsg: OK
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | cpuconsumptiontime: 60443 s
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | nevents: 150
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | neventsw: 0
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | pid: 1666508
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | pgrp: 1666508
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | corecount: 8
[2026-01-09 20:02:42] 2026-01-10 01:02:08,182 | INFO     | event service: False
[2026-01-09 20:02:42] 2026-01-10 01:02:08,183 | INFO     | sizes: {0: 2284381, 1: 2284580, 10: 2284842, 12: 2284870, 26107: 2321965, 26112: 2330959, 26115: 2331143, 26149: 2331389}
[2026-01-09 20:02:42] 2026-01-10 01:02:08,183 | INFO     | --------------------------------------------------
[2026-01-09 20:02:42] 2026-01-10 01:02:08,183 | INFO     | 
[2026-01-09 20:02:42] 2026-01-10 01:02:08,183 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 20:02:42] 2026-01-10 01:02:08,202 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,203 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,203 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,203 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,205 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,205 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:02:42] 2026-01-10 01:02:08,205 | INFO     | job 6963077037 has completed (purged errors)
[2026-01-09 20:02:42] 2026-01-10 01:02:08,205 | INFO     | overall cleanup function is called
[2026-01-09 20:02:42] 2026-01-10 01:02:09,221 | INFO     | --- collectZombieJob: --- 10, [1666508]
[2026-01-09 20:02:42] 2026-01-10 01:02:09,221 | INFO     | zombie collector waiting for pid 1666508
[2026-01-09 20:02:42] 2026-01-10 01:02:09,221 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:02:42] 2026-01-10 01:02:09,222 | INFO     | collected zombie processes
[2026-01-09 20:02:42] 2026-01-10 01:02:09,222 | INFO     | will attempt to kill all subprocesses of pid=1666508
[2026-01-09 20:02:42] 2026-01-10 01:02:09,813 | INFO     | process IDs to be killed: [1666508] (in reverse order)
[2026-01-09 20:02:42] 2026-01-10 01:02:10,682 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:02:42] 2026-01-10 01:02:10,682 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:02:42] 2026-01-10 01:02:10,735 | INFO     | did not find any defunct processes belonging to 1666508
[2026-01-09 20:02:42] 2026-01-10 01:02:10,770 | INFO     | did not find any defunct processes belonging to 1666508
[2026-01-09 20:02:42] 2026-01-10 01:02:10,770 | INFO     | ready for new job
[2026-01-09 20:02:42] 2026-01-10 01:02:10,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:02:42] 2026-01-10 01:02:10,809 | INFO     | ***************************************
[2026-01-09 20:02:42] 2026-01-10 01:02:10,809 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:02:42] 2026-01-10 01:02:10,810 | INFO     | ***************************************
[2026-01-09 20:02:42] 2026-01-10 01:02:10,810 | INFO     | 
[2026-01-09 20:02:42] 2026-01-10 01:02:10,826 | INFO     | architecture information:
[2026-01-09 20:02:42] 2026-01-10 01:02:10,843 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:02:42] 2026-01-10 01:02:11,061 | INFO     | cat /etc/os-release:
[2026-01-09 20:02:42] NAME="CentOS Linux"
[2026-01-09 20:02:42] VERSION="7 (Core)"
[2026-01-09 20:02:42] ID="centos"
[2026-01-09 20:02:42] ID_LIKE="rhel fedora"
[2026-01-09 20:02:42] VERSION_ID="7"
[2026-01-09 20:02:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:02:42] ANSI_COLOR="0;31"
[2026-01-09 20:02:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:02:42] HOME_URL="https://www.centos.org/"
[2026-01-09 20:02:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:02:42] 
[2026-01-09 20:02:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:02:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:02:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:02:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:02:42] 
[2026-01-09 20:02:42] 2026-01-10 01:02:11,062 | INFO     | ***************************************
[2026-01-09 20:02:42] 2026-01-10 01:02:11,565 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 20:02:42] 2026-01-10 01:02:11,611 | INFO     | sufficient remaining disk space (61403561984 B)
[2026-01-09 20:02:42] 2026-01-10 01:02:11,611 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:02:42] 2026-01-10 01:02:11,611 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:02:42] 2026-01-10 01:02:11,611 | INFO     | update_server=False
[2026-01-09 20:02:42] 2026-01-10 01:02:11,611 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:02:42] 2026-01-10 01:02:11,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:02:42] 2026-01-10 01:02:11,629 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:02:42] 2026-01-10 01:02:11,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:02:42] 2026-01-10 01:02:11,630 | INFO     | aborting loop
[2026-01-09 20:02:42] 2026-01-10 01:02:11,758 | INFO     | all data control threads have been joined
[2026-01-09 20:02:42] 2026-01-10 01:02:11,859 | INFO     | all job control threads have been joined
[2026-01-09 20:02:42] 2026-01-10 01:02:12,384 | INFO     | all payload control threads have been joined
[2026-01-09 20:02:42] 2026-01-10 01:02:12,617 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:12,638 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:12,763 | INFO     | [data] control thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:12,865 | INFO     | [job] control thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,130 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:02:42] 2026-01-10 01:02:13,334 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,390 | INFO     | [payload] control thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,484 | INFO     | [job] validate thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,619 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,769 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,777 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,804 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:13,841 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:14,202 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:14,207 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:15,656 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:02:42] 2026-01-10 01:02:32,768 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:02:42] 2026-01-10 01:02:34,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140402450655040)>', '<ExcThread(monitor, started 140401960785664)>']
[2026-01-09 20:02:42] 2026-01-10 01:02:39,118 | INFO     | all workflow threads have been joined
[2026-01-09 20:02:42] 2026-01-10 01:02:39,128 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:02:42] 2026-01-10 01:02:39,129 | INFO     | traces error code: 0
[2026-01-09 20:02:42] 2026-01-10 01:02:39,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:02:42] 2026-01-10 01:02:40,409 | INFO     | PID=1650434 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:02:42] 2026-01-10 01:02:40,410 | INFO     | .. there are 8 such processes running
[2026-01-09 20:02:42] 2026-01-10 01:02:40,411 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:02:42] 2026-01-10 01:02:40,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:02:42] 2026-01-10 01:02:40,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:02:42] 2026-01-10 01:02:40,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:02:42] 2026-01-10 01:02:40,412 | INFO     | [monitor] control thread has ended
[2026-01-09 20:02:42] 2026-01-10 01:02:41,315 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:02:42] 2026-01-10 01:02:41,338 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:02:42] 2026-01-10 01:02:41,361 [wrapper] pilotpid: 1650434
[2026-01-09 20:02:42] 2026-01-10 01:02:41,405 [wrapper] Pilot exit status: 0
[2026-01-09 20:02:42] 2026-01-10 01:02:41,523 [wrapper] pandaids: 6963077037 6963077037
[2026-01-09 20:02:42] 2026-01-10 01:02:41,890 [wrapper] cleanup supervisor_pilot 2267954 1650435
[2026-01-09 20:02:42] 2026-01-10 01:02:41,912 [wrapper] Test setup, not cleaning
[2026-01-09 20:02:42] 2026-01-10 01:02:41,928 [wrapper] apfmon messages muted
[2026-01-09 20:02:42] 2026-01-10 01:02:41,961 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:02:42] 2026-01-10 01:02:41,984 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:02:42]  *** Error codes and diagnostics ***
[2026-01-09 20:02:42]     "exeErrorCode": 0,
[2026-01-09 20:02:42]     "exeErrorDiag": "",
[2026-01-09 20:02:42]     "pilotErrorCode": 0,
[2026-01-09 20:02:42]     "pilotErrorDiag": "",
[2026-01-09 20:02:42]  *** Listing of results directory ***
[2026-01-09 20:02:42] total 964712
[2026-01-09 20:02:42] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-09 20:02:42] -rwx------. 1 boincer umatlas     36322 Jan  8 06:56 runpilot2-wrapper.sh
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 06:57 queuedata.json
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:02:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:10 run_atlas
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:10 job.xml
[2026-01-09 20:02:42] -rw-r--r--. 3 boincer umatlas 414398668 Jan  9 00:10 EVNT.47947080._000147.pool.root.1
[2026-01-09 20:02:42] -rw-r--r--. 3 boincer umatlas 414398668 Jan  9 00:10 ATLAS.root_0
[2026-01-09 20:02:42] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:10 start_atlas.sh
[2026-01-09 20:02:42] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:10 shared
[2026-01-09 20:02:42] -rw-r--r--. 2 boincer umatlas    592614 Jan  9 00:10 input.tar.gz
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:10 boinc_lockfile
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas      2877 Jan  9 12:45 pandaJob.out
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas        57 Jan  9 12:45 setup.sh.local
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas    989356 Jan  9 12:45 agis_schedconf.cvmfs.json
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas       532 Jan  9 19:46 boinc_task_state.xml
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas      6614 Jan  9 19:57 init_data.xml
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas 145399808 Jan  9 20:01 HITS.47947082._005296.pool.root.1
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas      1055 Jan  9 20:01 memory_monitor_summary.json
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:01 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas   1508078 Jan  9 20:01 log.47947082._005296.job.log.tgz.1
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas      8614 Jan  9 20:02 heartbeat.json
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas        28 Jan  9 20:02 wrapper_checkpoint.txt
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:02 boinc_mmap_file
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas        96 Jan  9 20:02 pilot_heartbeat.json
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas       822 Jan  9 20:02 pilotlog.txt
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas   3363956 Jan  9 20:02 log.47947082._005296.job.log.1
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas       353 Jan  9 20:02 output.list
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:02 runtime_log
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas   4894720 Jan  9 20:02 result.tar.gz
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 20:02 runtime_log.err
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas       785 Jan  9 20:02 LReLDmOo3x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGWkKDmHUCSKo.diag
[2026-01-09 20:02:42] -rw-r--r--. 1 boincer umatlas     23282 Jan  9 20:02 stderr.txt
[2026-01-09 20:02:42] HITS file was successfully produced:
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas 145399808 Jan  9 20:01 shared/HITS.pool.root.1
[2026-01-09 20:02:42]  *** Contents of shared directory: ***
[2026-01-09 20:02:42] total 552060
[2026-01-09 20:02:42] -rw-r--r--. 3 boincer umatlas 414398668 Jan  9 00:10 ATLAS.root_0
[2026-01-09 20:02:42] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:10 start_atlas.sh
[2026-01-09 20:02:42] -rw-r--r--. 2 boincer umatlas    592614 Jan  9 00:10 input.tar.gz
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas 145399808 Jan  9 20:01 HITS.pool.root.1
[2026-01-09 20:02:42] -rw-------. 1 boincer umatlas   4894720 Jan  9 20:02 result.tar.gz
20:02:43 (1641566): run_atlas exited; CPU time 60911.277107
20:02:43 (1641566): called boinc_finish(0)

</stderr_txt>
]]>

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