Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:19:32 (5187): wrapper (7.7.26015): starting
10:19:32 (5187): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 10:19:32] Arguments: --nthreads 8
[2026-01-09 10:19:32] Threads: 8
[2026-01-09 10:19:32] Checking for CVMFS
[2026-01-09 10:19:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 10:19:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 10:19:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 10:19:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 10:19:32] 2.11.2.0 17161 15469 98224 154938 1 56 20674010 25165824 0 130560 0 1878155 99.294 2715512 3228 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 10:19:32] CVMFS is ok
[2026-01-09 10:19:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 10:19:32] Checking for apptainer binary...
[2026-01-09 10:19:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 10:19:32] Running /usr/bin/apptainer --version
[2026-01-09 10:19:32] apptainer version 1.3.2-1.el7
[2026-01-09 10:19:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 10:19:33] cg-vwn491.simple-grid.lan
[2026-01-09 10:19:33] apptainer works
[2026-01-09 10:19:34] Set ATHENA_PROC_NUMBER=8
[2026-01-09 10:19:34] Set ATHENA_CORE_NUMBER=8
[2026-01-09 10:19:34] Starting ATLAS job with PandaID=6963152616
[2026-01-09 10:19:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:55:12]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:55:12] 2026-01-09 11:54:33,813 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 12:55:12] 2026-01-09 11:54:33,814 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 12:55:12] 2026-01-09 11:54:33,816 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6963152616/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,817 | INFO     | extracted standard info from prmon json
[2026-01-09 12:55:12] 2026-01-09 11:54:33,817 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 12:55:12] 2026-01-09 11:54:33,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 12:55:12] 2026-01-09 11:54:33,818 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:55:12] 2026-01-09 11:54:33,818 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:55:12] 2026-01-09 11:54:33,821 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:55:12] 2026-01-09 11:54:33,822 | INFO     | sum of square deviations: 1088905998.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,823 | INFO     | sum of deviations: -20081914310.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,823 | INFO     | mean x: 1767955028.5
[2026-01-09 12:55:12] 2026-01-09 11:54:33,823 | INFO     | mean y: 2540244.3157894737
[2026-01-09 12:55:12] 2026-01-09 11:54:33,823 | INFO     | intersect: 32607670027.30979
[2026-01-09 12:55:12] 2026-01-09 11:54:33,824 | INFO     | chi2: 2.487617992168805
[2026-01-09 12:55:12] 2026-01-09 11:54:33,824 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,825 | INFO     | sum of deviations: -8808965836.000004
[2026-01-09 12:55:12] 2026-01-09 11:54:33,825 | INFO     | mean x: 1767954876.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,825 | INFO     | mean y: 2556388.551020408
[2026-01-09 12:55:12] 2026-01-09 11:54:33,826 | INFO     | intersect: 15814518752.57824
[2026-01-09 12:55:12] 2026-01-09 11:54:33,826 | INFO     | chi2: 1.7248517487489199
[2026-01-09 12:55:12] 2026-01-09 11:54:33,826 | INFO     | current chi2=1.7248517487489199 (change=30.66251513781965 %)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,826 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 12:55:12] 2026-01-09 11:54:33,827 | INFO     | sum of deviations: -7756967430.500005
[2026-01-09 12:55:12] 2026-01-09 11:54:33,827 | INFO     | mean x: 1767954723.5
[2026-01-09 12:55:12] 2026-01-09 11:54:33,828 | INFO     | mean y: 2558040.9507042253
[2026-01-09 12:55:12] 2026-01-09 11:54:33,828 | INFO     | intersect: 15449452819.434078
[2026-01-09 12:55:12] 2026-01-09 11:54:33,828 | INFO     | chi2: 1.7254993016701259
[2026-01-09 12:55:12] 2026-01-09 11:54:33,828 | INFO     | current chi2=1.7254993016701259 (change=-0.037542526288168426 %)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,828 | INFO     | right removable region: 141
[2026-01-09 12:55:12] 2026-01-09 11:54:33,829 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,830 | INFO     | sum of deviations: -43566343350.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,830 | INFO     | mean x: 1767955181.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,830 | INFO     | mean y: 2574173.1904761903
[2026-01-09 12:55:12] 2026-01-09 11:54:33,830 | INFO     | intersect: 78203524551.95651
[2026-01-09 12:55:12] 2026-01-09 11:54:33,830 | INFO     | chi2: 0.9719987248291199
[2026-01-09 12:55:12] 2026-01-09 11:54:33,831 | INFO     | current chi2=0.9719987248291199 (change=60.92652779128308 %)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,831 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 12:55:12] 2026-01-09 11:54:33,832 | INFO     | sum of deviations: -44616209073.50001
[2026-01-09 12:55:12] 2026-01-09 11:54:33,832 | INFO     | mean x: 1767955333.5
[2026-01-09 12:55:12] 2026-01-09 11:54:33,832 | INFO     | mean y: 2575742.528169014
[2026-01-09 12:55:12] 2026-01-09 11:54:33,832 | INFO     | intersect: 88849426130.57713
[2026-01-09 12:55:12] 2026-01-09 11:54:33,833 | INFO     | chi2: 0.9286901595408323
[2026-01-09 12:55:12] 2026-01-09 11:54:33,833 | INFO     | current chi2=0.9286901595408323 (change=4.455619558132784 %)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,833 | INFO     | left removable region: 20
[2026-01-09 12:55:12] 2026-01-09 11:54:33,833 | INFO     | sum of square deviations: 549294020.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,834 | INFO     | sum of deviations: -24966483027.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,834 | INFO     | mean x: 1767955303.0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,834 | INFO     | mean y: 2585358.9421487604
[2026-01-09 12:55:12] 2026-01-09 11:54:33,834 | INFO     | intersect: 80359597191.77467
[2026-01-09 12:55:12] 2026-01-09 11:54:33,835 | INFO     | chi2: 0.12079446766620122
[2026-01-09 12:55:12] 2026-01-09 11:54:33,835 | INFO     | current memory leak: -45.45 B/s (using 121 data points, chi2=0.12)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,836 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,836 | INFO     | ..............................
[2026-01-09 12:55:12] 2026-01-09 11:54:33,836 | INFO     | . Timing measurements:
[2026-01-09 12:55:12] 2026-01-09 11:54:33,836 | INFO     | . get job = 0 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,836 | INFO     | . initial setup = 1 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,836 | INFO     | . payload setup = 7 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,836 | INFO     | . stage-in = 0 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,837 | INFO     | . payload execution = 9243 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,837 | INFO     | . stage-out = 0 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,837 | INFO     | . log creation = 0 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,837 | INFO     | ..............................
[2026-01-09 12:55:12] 2026-01-09 11:54:33,946 | INFO     | 
[2026-01-09 12:55:12] 2026-01-09 11:54:33,946 | INFO     | job summary report
[2026-01-09 12:55:12] 2026-01-09 11:54:33,946 | INFO     | --------------------------------------------------
[2026-01-09 12:55:12] 2026-01-09 11:54:33,946 | INFO     | PanDA job id: 6963152616
[2026-01-09 12:55:12] 2026-01-09 11:54:33,946 | INFO     | task id: 47898826
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | errors: (none)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | pilot state: finished 
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | transexitcode: 0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | exeerrorcode: 0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | exeerrordiag: 
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | exitcode: 0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | exitmsg: OK
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | cpuconsumptiontime: 68714 s
[2026-01-09 12:55:12] 2026-01-09 11:54:33,947 | INFO     | nevents: 400
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | neventsw: 0
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | pid: 15371
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | pgrp: 15371
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | corecount: 8
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | event service: False
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | sizes: {0: 2283795, 1: 2283994, 7: 2284256, 11: 2284284, 9254: 2312189, 9256: 2321187, 9258: 2321371, 9266: 2321565}
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | --------------------------------------------------
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | 
[2026-01-09 12:55:12] 2026-01-09 11:54:33,948 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-09 12:55:12] 2026-01-09 11:54:33,971 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,971 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,971 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,972 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,973 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:55:12] 2026-01-09 11:54:33,974 | INFO     | job 6963152616 has completed (purged errors)
[2026-01-09 12:55:12] 2026-01-09 11:54:33,974 | INFO     | overall cleanup function is called
[2026-01-09 12:55:12] 2026-01-09 11:54:34,982 | INFO     | --- collectZombieJob: --- 10, [15371]
[2026-01-09 12:55:12] 2026-01-09 11:54:34,982 | INFO     | zombie collector waiting for pid 15371
[2026-01-09 12:55:12] 2026-01-09 11:54:34,982 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:55:12] 2026-01-09 11:54:34,982 | INFO     | collected zombie processes
[2026-01-09 12:55:12] 2026-01-09 11:54:34,983 | INFO     | will attempt to kill all subprocesses of pid=15371
[2026-01-09 12:55:12] 2026-01-09 11:54:35,026 | INFO     | process IDs to be killed: [15371] (in reverse order)
[2026-01-09 12:55:12] 2026-01-09 11:54:35,075 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:55:12] 2026-01-09 11:54:35,076 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:55:12] 2026-01-09 11:54:35,078 | INFO     | did not find any defunct processes belonging to 15371
[2026-01-09 12:55:12] 2026-01-09 11:54:35,079 | INFO     | did not find any defunct processes belonging to 15371
[2026-01-09 12:55:12] 2026-01-09 11:54:35,079 | INFO     | ready for new job
[2026-01-09 12:55:12] 2026-01-09 11:54:35,080 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:55:12] 2026-01-09 11:54:35,081 | INFO     | ***************************************
[2026-01-09 12:55:12] 2026-01-09 11:54:35,081 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:55:12] 2026-01-09 11:54:35,081 | INFO     | ***************************************
[2026-01-09 12:55:12] 2026-01-09 11:54:35,082 | INFO     | 
[2026-01-09 12:55:12] 2026-01-09 11:54:35,082 | INFO     | pilot is running in a VM
[2026-01-09 12:55:12] 2026-01-09 11:54:35,082 | INFO     | architecture information:
[2026-01-09 12:55:12] 2026-01-09 11:54:35,083 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:55:12] 2026-01-09 11:54:35,104 | INFO     | cat /etc/os-release:
[2026-01-09 12:55:12] NAME="CentOS Linux"
[2026-01-09 12:55:12] VERSION="7 (Core)"
[2026-01-09 12:55:12] ID="centos"
[2026-01-09 12:55:12] ID_LIKE="rhel fedora"
[2026-01-09 12:55:12] VERSION_ID="7"
[2026-01-09 12:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:55:12] ANSI_COLOR="0;31"
[2026-01-09 12:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:55:12] HOME_URL="https://www.centos.org/"
[2026-01-09 12:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:55:12] 
[2026-01-09 12:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:55:12] 
[2026-01-09 12:55:12] 2026-01-09 11:54:35,105 | INFO     | ***************************************
[2026-01-09 12:55:12] 2026-01-09 11:54:35,608 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-09 12:55:12] 2026-01-09 11:54:35,627 | INFO     | sufficient remaining disk space (498068357120 B)
[2026-01-09 12:55:12] 2026-01-09 11:54:35,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:55:12] 2026-01-09 11:54:35,627 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:55:12] 2026-01-09 11:54:35,627 | INFO     | update_server=False
[2026-01-09 12:55:12] 2026-01-09 11:54:35,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:55:12] 2026-01-09 11:54:35,628 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:55:12] 2026-01-09 11:54:35,884 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 12:55:12] 2026-01-09 11:54:35,884 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 12:55:12] 2026-01-09 11:54:35,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:55:12] 2026-01-09 11:54:35,885 | INFO     | will abort loop
[2026-01-09 12:55:12] 2026-01-09 11:54:35,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:55:12] 2026-01-09 11:54:36,341 | INFO     | all data control threads have been joined
[2026-01-09 12:55:12] 2026-01-09 11:54:36,354 | INFO     | all job control threads have been joined
[2026-01-09 12:55:12] 2026-01-09 11:54:36,633 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:36,634 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:36,642 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:55:12] 2026-01-09 11:54:36,759 | INFO     | all payload control threads have been joined
[2026-01-09 12:55:12] 2026-01-09 11:54:36,890 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:36,965 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,094 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,131 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,288 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,347 | INFO     | [data] control thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,360 | INFO     | [job] control thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,490 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,558 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,612 | INFO     | [job] validate thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,704 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:37,765 | INFO     | [payload] control thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:38,644 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:54:39,981 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:55:12] 2026-01-09 11:55:05,264 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:55:12] 2026-01-09 11:55:05,399 | INFO     | PID=8939 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 12:55:12] 2026-01-09 11:55:05,400 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:55:12] 2026-01-09 11:55:05,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:55:12] 2026-01-09 11:55:05,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:55:12] 2026-01-09 11:55:07,153 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140605188572992)>', '<ExcThread(monitor, started 140603857819392)>']
[2026-01-09 12:55:12] 2026-01-09 11:55:07,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:55:12] 2026-01-09 11:55:07,411 | INFO     | [monitor] control thread has ended
[2026-01-09 12:55:12] 2026-01-09 11:55:12,179 | INFO     | all workflow threads have been joined
[2026-01-09 12:55:12] 2026-01-09 11:55:12,179 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:55:12] 2026-01-09 11:55:12,180 | INFO     | traces error code: 0
[2026-01-09 12:55:12] 2026-01-09 11:55:12,180 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:55:12] 2026-01-09 11:55:12,313 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:55:12] 2026-01-09 11:55:12,317 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:55:12] 2026-01-09 11:55:12,323 [wrapper] pilotpid: 8939
[2026-01-09 12:55:12] 2026-01-09 11:55:12,326 [wrapper] Pilot exit status: 0
[2026-01-09 12:55:12] 2026-01-09 11:55:12,353 [wrapper] pandaids: 6963152616
[2026-01-09 12:55:12] 2026-01-09 11:55:12,396 [wrapper] cleanup supervisor_pilot 32050 8940
[2026-01-09 12:55:12] 2026-01-09 11:55:12,401 [wrapper] Test setup, not cleaning
[2026-01-09 12:55:12] 2026-01-09 11:55:12,404 [wrapper] apfmon messages muted
[2026-01-09 12:55:12] 2026-01-09 11:55:12,408 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:55:12] 2026-01-09 11:55:12,411 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:55:12]  *** Error codes and diagnostics ***
[2026-01-09 12:55:12]     "exeErrorCode": 0,
[2026-01-09 12:55:12]     "exeErrorDiag": "",
[2026-01-09 12:55:12]     "pilotErrorCode": 0,
[2026-01-09 12:55:12]     "pilotErrorDiag": "",
[2026-01-09 12:55:12]  *** Listing of results directory ***
[2026-01-09 12:55:12] total 444136
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 12:55:12] -rwx------. 1 boinc boinc     36322 Jan  8 17:06 runpilot2-wrapper.sh
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc      5112 Jan  8 17:09 queuedata.json
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc       100 Jan  9 10:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:55:12] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 10:19 run_atlas
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc       105 Jan  9 10:19 job.xml
[2026-01-09 12:55:12] -rw-r--r--. 2 boinc boinc 225896788 Jan  9 10:19 EVNT.47898824._000876.pool.root.1
[2026-01-09 12:55:12] -rw-r--r--. 2 boinc boinc    592396 Jan  9 10:19 input.tar.gz
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc      6390 Jan  9 10:19 init_data.xml
[2026-01-09 12:55:12] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:19 start_atlas.sh
[2026-01-09 12:55:12] drwxrwx--x. 2 boinc boinc        68 Jan  9 10:19 shared
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc         0 Jan  9 10:19 boinc_lockfile
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc      2517 Jan  9 10:19 pandaJob.out
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc    989751 Jan  9 10:19 agis_schedconf.cvmfs.json
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc   1516240 Jan  9 10:19 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:55:12] drwx------. 5 boinc boinc      4096 Jan  9 10:19 pilot3
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc 221761387 Jan  9 12:53 HITS.47898826._029374.pool.root.1
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc       529 Jan  9 12:53 boinc_task_state.xml
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc      1028 Jan  9 12:54 memory_monitor_summary.json
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc    373886 Jan  9 12:54 log.47898826._029374.job.log.tgz.1
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc      7775 Jan  9 12:54 heartbeat.json
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc      8192 Jan  9 12:54 boinc_mmap_file
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc        27 Jan  9 12:54 wrapper_checkpoint.txt
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc        95 Jan  9 12:55 pilot_heartbeat.json
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc      4994 Jan  9 12:55 pilotlog.txt
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc   1246287 Jan  9 12:55 log.47898826._029374.job.log.1
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc       357 Jan  9 12:55 output.list
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc       620 Jan  9 12:55 runtime_log
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc   1638400 Jan  9 12:55 result.tar.gz
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc      8816 Jan  9 12:55 runtime_log.err
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc       652 Jan  9 12:55 ACxNDmCi7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmM5kKDmaSokvn.diag
[2026-01-09 12:55:12] -rw-r--r--. 1 boinc boinc     20721 Jan  9 12:55 stderr.txt
[2026-01-09 12:55:12] HITS file was successfully produced:
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc 221761387 Jan  9 12:53 shared/HITS.pool.root.1
[2026-01-09 12:55:12]  *** Contents of shared directory: ***
[2026-01-09 12:55:12] total 439364
[2026-01-09 12:55:12] -rw-r--r--. 2 boinc boinc 225896788 Jan  9 10:19 ATLAS.root_0
[2026-01-09 12:55:12] -rw-r--r--. 2 boinc boinc    592396 Jan  9 10:19 input.tar.gz
[2026-01-09 12:55:12] -rw-r--r--. 2 boinc boinc     15847 Jan  9 10:19 start_atlas.sh
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc 221761387 Jan  9 12:53 HITS.pool.root.1
[2026-01-09 12:55:12] -rw-------. 1 boinc boinc   1638400 Jan  9 12:55 result.tar.gz
12:55:13 (5187): run_atlas exited; CPU time 68776.748843
12:55:13 (5187): called boinc_finish(0)

</stderr_txt>
]]>

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