Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:41 (2438016): wrapper (7.7.26015): starting
00:04:41 (2438016): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:04:41] Arguments: --nthreads 12
[2026-01-09 00:04:41] Threads: 12
[2026-01-09 00:04:41] Checking for CVMFS
[2026-01-09 00:04:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:04:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:04:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:04:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:04:42] 2.13.3.0 9728 20833 169188 154931 2 332 35025250 39288832 9261 16776704 0 9504534 99.505 11335319 36089 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:04:42] CVMFS is ok
[2026-01-09 00:04:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:04:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:04:42] Further information can be found at the LHC@home message board.
[2026-01-09 00:04:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:04:42] Checking for apptainer binary...
[2026-01-09 00:04:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:04:42] Running /usr/bin/apptainer --version
[2026-01-09 00:04:42] apptainer version 1.4.5-2.el9
[2026-01-09 00:04:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:04:42] c-211-5.aglt2.org
[2026-01-09 00:04:42] apptainer works
[2026-01-09 00:04:43] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:04:43] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:04:43] Starting ATLAS job with PandaID=6963152635
[2026-01-09 00:04:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:05:40]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:05:40] 2026-01-10 03:04:38,232 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 22:05:40] 2026-01-10 03:04:38,232 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 22:05:40] 2026-01-10 03:04:38,275 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 22:05:40] 2026-01-10 03:04:38,275 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 22:05:40] 2026-01-10 03:04:38,518 | INFO     | fitting pss+swap vs Time
[2026-01-09 22:05:40] 2026-01-10 03:04:38,520 | INFO     | sum of square deviations: 676543934318.4955
[2026-01-09 22:05:40] 2026-01-10 03:04:39,044 | INFO     | sum of deviations: 851500389919.5978
[2026-01-09 22:05:40] 2026-01-10 03:04:39,044 | INFO     | mean x: 1767974669.9560525
[2026-01-09 22:05:40] 2026-01-10 03:04:39,045 | INFO     | mean y: 2672628.835003855
[2026-01-09 22:05:40] 2026-01-10 03:04:39,045 | INFO     | intersect: -2222506024.71692
[2026-01-09 22:05:40] 2026-01-10 03:04:39,060 | INFO     | chi2: 6.020264825674511
[2026-01-09 22:05:40] 2026-01-10 03:04:39,062 | INFO     | sum of square deviations: 668750064048.9066
[2026-01-09 22:05:40] 2026-01-10 03:04:39,543 | INFO     | sum of deviations: 1298854402053.9019
[2026-01-09 22:05:40] 2026-01-10 03:04:39,543 | INFO     | mean x: 1767974517.4597523
[2026-01-09 22:05:40] 2026-01-10 03:04:39,543 | INFO     | mean y: 2681382.257739938
[2026-01-09 22:05:40] 2026-01-10 03:04:39,543 | INFO     | intersect: -3431099948.2720284
[2026-01-09 22:05:40] 2026-01-10 03:04:39,545 | INFO     | chi2: 2.383989248146598
[2026-01-09 22:05:40] 2026-01-10 03:04:39,545 | INFO     | current chi2=2.383989248146598 (change=60.400591715174336 %)
[2026-01-09 22:05:40] 2026-01-10 03:04:39,599 | INFO     | sum of square deviations: 661016051496.0577
[2026-01-09 22:05:40] 2026-01-10 03:04:40,005 | INFO     | time since job start (79175s) is within the limit (349056.0s)
[2026-01-09 22:05:40] 2026-01-10 03:04:40,106 | INFO     | sum of deviations: 1284173409831.173
[2026-01-09 22:05:40] 2026-01-10 03:04:40,106 | INFO     | mean x: 1767974364.96115
[2026-01-09 22:05:40] 2026-01-10 03:04:40,106 | INFO     | mean y: 2681092.8834498837
[2026-01-09 22:05:40] 2026-01-10 03:04:40,106 | INFO     | intersect: -3432009583.096002
[2026-01-09 22:05:40] 2026-01-10 03:04:40,161 | INFO     | chi2: 2.3838085443249737
[2026-01-09 22:05:40] 2026-01-10 03:04:40,161 | INFO     | current chi2=2.3838085443249737 (change=0.007579892474971092 %)
[2026-01-09 22:05:40] 2026-01-10 03:04:40,161 | INFO     | right removable region: 1286
[2026-01-09 22:05:40] 2026-01-10 03:04:40,195 | INFO     | sum of square deviations: 668749386766.8247
[2026-01-09 22:05:40] 2026-01-10 03:04:40,468 | INFO     | monitor loop #4776: job 0:6963152635 is in state 'finished'
[2026-01-09 22:05:40] 2026-01-10 03:04:40,469 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 22:05:40] 2026-01-10 03:04:40,490 | INFO     | sum of deviations: 554339596041.3923
[2026-01-09 22:05:40] 2026-01-10 03:04:40,502 | INFO     | mean x: 1767974822.4589784
[2026-01-09 22:05:40] 2026-01-10 03:04:40,503 | INFO     | mean y: 2678437.2809597524
[2026-01-09 22:05:40] 2026-01-10 03:04:40,503 | INFO     | intersect: -1462830867.5297868
[2026-01-09 22:05:40] 2026-01-10 03:04:40,505 | INFO     | chi2: 4.143487110670133
[2026-01-09 22:05:40] 2026-01-10 03:04:40,505 | INFO     | current chi2=4.143487110670133 (change=31.174338162011068 %)
[2026-01-09 22:05:40] 2026-01-10 03:04:40,518 | INFO     | sum of square deviations: 661014854552.2101
[2026-01-09 22:05:40] 2026-01-10 03:04:40,701 | INFO     | sum of deviations: 429703563431.33295
[2026-01-09 22:05:40] 2026-01-10 03:04:40,702 | INFO     | mean x: 1767974974.962704
[2026-01-09 22:05:40] 2026-01-10 03:04:40,702 | INFO     | mean y: 2680894.111111111
[2026-01-09 22:05:40] 2026-01-10 03:04:40,702 | INFO     | intersect: -1146620277.5146627
[2026-01-09 22:05:40] 2026-01-10 03:04:40,704 | INFO     | chi2: 3.882317767477626
[2026-01-09 22:05:40] 2026-01-10 03:04:40,704 | INFO     | current chi2=3.882317767477626 (change=6.303129132945889 %)
[2026-01-09 22:05:40] 2026-01-10 03:04:40,705 | INFO     | left removable region: 20
[2026-01-09 22:05:40] 2026-01-10 03:04:40,706 | INFO     | sum of square deviations: 629182306211.6395
[2026-01-09 22:05:40] 2026-01-10 03:04:40,751 | INFO     | sum of deviations: 718532313504.2189
[2026-01-09 22:05:40] 2026-01-10 03:04:40,752 | INFO     | mean x: 1767974944.4739337
[2026-01-09 22:05:40] 2026-01-10 03:04:40,752 | INFO     | mean y: 2692309.4763033176
[2026-01-09 22:05:40] 2026-01-10 03:04:40,752 | INFO     | intersect: -2016352273.514622
[2026-01-09 22:05:40] 2026-01-10 03:04:40,754 | INFO     | chi2: 0.012715481311685976
[2026-01-09 22:05:40] 2026-01-10 03:04:40,754 | INFO     | current memory leak: 1.14 B/s (using 1266 data points, chi2=0.01)
[2026-01-09 22:05:40] 2026-01-10 03:04:40,755 | INFO     | could have reported an average CPU frequency of 2599 MHz (46 samples)
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | ..............................
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | . Timing measurements:
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | . get job = 0 s
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | . initial setup = 5 s
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | . payload setup = 8 s
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | . stage-in = 0 s
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | . payload execution = 79083 s
[2026-01-09 22:05:40] 2026-01-10 03:04:40,756 | INFO     | . stage-out = 10 s
[2026-01-09 22:05:40] 2026-01-10 03:04:40,757 | INFO     | . log creation = 4 s
[2026-01-09 22:05:40] 2026-01-10 03:04:40,757 | INFO     | ..............................
[2026-01-09 22:05:40] 2026-01-10 03:04:41,238 | INFO     | 
[2026-01-09 22:05:40] 2026-01-10 03:04:41,238 | INFO     | job summary report
[2026-01-09 22:05:40] 2026-01-10 03:04:41,238 | INFO     | --------------------------------------------------
[2026-01-09 22:05:40] 2026-01-10 03:04:41,238 | INFO     | PanDA job id: 6963152635
[2026-01-09 22:05:40] 2026-01-10 03:04:41,238 | INFO     | task id: 47898826
[2026-01-09 22:05:40] 2026-01-10 03:04:41,238 | INFO     | errors: (none)
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | pilot state: finished 
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | transexitcode: 0
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | exeerrorcode: 0
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | exeerrordiag: 
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | exitcode: 0
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | exitmsg: OK
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | cpuconsumptiontime: 72377 s
[2026-01-09 22:05:40] 2026-01-10 03:04:41,239 | INFO     | nevents: 400
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | neventsw: 0
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | pid: 2449584
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | pgrp: 2449584
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | corecount: 12
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | event service: False
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | sizes: {0: 2283968, 2: 2283968, 9: 2284258, 12: 2284286, 79097: 2345657, 79109: 2354683, 79111: 2354867, 79154: 2355061}
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | --------------------------------------------------
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | 
[2026-01-09 22:05:40] 2026-01-10 03:04:41,240 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 22:05:40] 2026-01-10 03:04:41,450 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,450 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,450 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,450 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,451 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,452 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,452 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,452 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,452 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:05:40] 2026-01-10 03:04:41,452 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,452 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:05:40] 2026-01-10 03:04:41,452 | INFO     | job 6963152635 has completed (purged errors)
[2026-01-09 22:05:40] 2026-01-10 03:04:41,453 | INFO     | overall cleanup function is called
[2026-01-09 22:05:40] 2026-01-10 03:04:42,472 | INFO     | --- collectZombieJob: --- 10, [2449584]
[2026-01-09 22:05:40] 2026-01-10 03:04:42,473 | INFO     | zombie collector waiting for pid 2449584
[2026-01-09 22:05:40] 2026-01-10 03:04:42,473 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:05:40] 2026-01-10 03:04:42,473 | INFO     | collected zombie processes
[2026-01-09 22:05:40] 2026-01-10 03:04:42,473 | INFO     | will attempt to kill all subprocesses of pid=2449584
[2026-01-09 22:05:40] 2026-01-10 03:04:43,460 | INFO     | process IDs to be killed: [2449584] (in reverse order)
[2026-01-09 22:05:40] 2026-01-10 03:04:43,768 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:05:40] 2026-01-10 03:04:43,769 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:05:40] 2026-01-10 03:04:43,850 | INFO     | did not find any defunct processes belonging to 2449584
[2026-01-09 22:05:40] 2026-01-10 03:04:43,935 | INFO     | did not find any defunct processes belonging to 2449584
[2026-01-09 22:05:40] 2026-01-10 03:04:43,935 | INFO     | ready for new job
[2026-01-09 22:05:40] 2026-01-10 03:04:43,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:05:40] 2026-01-10 03:04:44,035 | INFO     | ***************************************
[2026-01-09 22:05:40] 2026-01-10 03:04:44,035 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:05:40] 2026-01-10 03:04:44,036 | INFO     | ***************************************
[2026-01-09 22:05:40] 2026-01-10 03:04:44,036 | INFO     | 
[2026-01-09 22:05:40] 2026-01-10 03:04:44,038 | INFO     | architecture information:
[2026-01-09 22:05:40] 2026-01-10 03:04:44,083 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:05:40] 2026-01-10 03:04:44,364 | INFO     | cat /etc/os-release:
[2026-01-09 22:05:40] NAME="CentOS Linux"
[2026-01-09 22:05:40] VERSION="7 (Core)"
[2026-01-09 22:05:40] ID="centos"
[2026-01-09 22:05:40] ID_LIKE="rhel fedora"
[2026-01-09 22:05:40] VERSION_ID="7"
[2026-01-09 22:05:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:05:40] ANSI_COLOR="0;31"
[2026-01-09 22:05:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:05:40] HOME_URL="https://www.centos.org/"
[2026-01-09 22:05:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:05:40] 
[2026-01-09 22:05:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:05:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:05:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:05:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:05:40] 
[2026-01-09 22:05:40] 2026-01-10 03:04:44,364 | INFO     | ***************************************
[2026-01-09 22:05:40] 2026-01-10 03:04:44,870 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 22:05:40] 2026-01-10 03:04:45,121 | INFO     | sufficient remaining disk space (52942602240 B)
[2026-01-09 22:05:40] 2026-01-10 03:04:45,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:05:40] 2026-01-10 03:04:45,121 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:05:40] 2026-01-10 03:04:45,121 | INFO     | update_server=False
[2026-01-09 22:05:40] 2026-01-10 03:04:45,122 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:05:40] 2026-01-10 03:04:45,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:05:40] 2026-01-10 03:04:45,141 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:05:40] 2026-01-10 03:04:45,309 | INFO     | all data control threads have been joined
[2026-01-09 22:05:40] 2026-01-10 03:04:45,497 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 22:05:40] 2026-01-10 03:04:45,498 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 22:05:40] 2026-01-10 03:04:45,498 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:05:40] 2026-01-10 03:04:45,498 | INFO     | will abort loop
[2026-01-09 22:05:40] 2026-01-10 03:04:45,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:05:40] 2026-01-10 03:04:46,128 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:46,166 | INFO     | [job] validate thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:46,275 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:46,297 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:46,323 | INFO     | [data] control thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:46,369 | INFO     | all payload control threads have been joined
[2026-01-09 22:05:40] 2026-01-10 03:04:46,479 | INFO     | all job control threads have been joined
[2026-01-09 22:05:40] 2026-01-10 03:04:46,503 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:46,934 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:46,940 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:47,079 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:47,158 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:47,303 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:47,375 | INFO     | [payload] control thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:47,485 | INFO     | [job] control thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:47,690 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:47,712 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:04:49,187 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:05:40] 2026-01-10 03:05:14,017 | INFO     | PID=2441702 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:05:40] 2026-01-10 03:05:14,024 | INFO     | .. there are 7 such processes running
[2026-01-09 22:05:40] 2026-01-10 03:05:14,025 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:05:40] 2026-01-10 03:05:14,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:05:40] 2026-01-10 03:05:14,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:05:40] 2026-01-10 03:05:14,671 [wrapper] supervise_pilot (15 min periods counter: 89)
[2026-01-09 22:05:40] 2026-01-10 03:05:31,598 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:05:40] 2026-01-10 03:05:33,396 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196878317376)>', '<ExcThread(monitor, started 140196473444096)>']
[2026-01-09 22:05:40] 2026-01-10 03:05:34,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:05:40] 2026-01-10 03:05:34,150 | INFO     | [monitor] control thread has ended
[2026-01-09 22:05:40] 2026-01-10 03:05:38,422 | INFO     | all workflow threads have been joined
[2026-01-09 22:05:40] 2026-01-10 03:05:38,423 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:05:40] 2026-01-10 03:05:38,423 | INFO     | traces error code: 0
[2026-01-09 22:05:40] 2026-01-10 03:05:38,423 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:05:40] 2026-01-10 03:05:39,300 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:05:40] 2026-01-10 03:05:39,316 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:05:40] 2026-01-10 03:05:39,367 [wrapper] pilotpid: 2441702
[2026-01-09 22:05:40] 2026-01-10 03:05:39,415 [wrapper] Pilot exit status: 0
[2026-01-09 22:05:40] 2026-01-10 03:05:39,569 [wrapper] pandaids: 6963152635
[2026-01-09 22:05:40] 2026-01-10 03:05:39,795 [wrapper] cleanup supervisor_pilot  247896 2441703
[2026-01-09 22:05:40] 2026-01-10 03:05:39,813 [wrapper] Test setup, not cleaning
[2026-01-09 22:05:40] 2026-01-10 03:05:39,855 [wrapper] apfmon messages muted
[2026-01-09 22:05:40] 2026-01-10 03:05:39,882 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:05:40] 2026-01-10 03:05:39,909 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:05:40]  *** Error codes and diagnostics ***
[2026-01-09 22:05:40]     "exeErrorCode": 0,
[2026-01-09 22:05:40]     "exeErrorDiag": "",
[2026-01-09 22:05:40]     "pilotErrorCode": 0,
[2026-01-09 22:05:40]     "pilotErrorDiag": "",
[2026-01-09 22:05:40]  *** Listing of results directory ***
[2026-01-09 22:05:40] total 468420
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 22:05:40] -rwx------. 1 boincer umatlas     36322 Jan  8 11:06 runpilot2-wrapper.sh
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:05:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:04 run_atlas
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:04 job.xml
[2026-01-09 22:05:40] -rw-r--r--. 2 boincer umatlas 225896788 Jan  9 00:04 EVNT.47898824._000876.pool.root.1
[2026-01-09 22:05:40] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:04 start_atlas.sh
[2026-01-09 22:05:40] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:04 shared
[2026-01-09 22:05:40] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 00:04 input.tar.gz
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:04 boinc_lockfile
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 00:04 pandaJob.out
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas        57 Jan  9 00:04 setup.sh.local
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas    989771 Jan  9 00:05 agis_schedconf.cvmfs.json
[2026-01-09 22:05:40] drwx------. 5 boincer umatlas      4096 Jan  9 00:05 pilot3
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas 227309959 Jan  9 21:58 HITS.47898826._029393.pool.root.1
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas       531 Jan  9 21:58 boinc_task_state.xml
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas      6657 Jan  9 22:02 init_data.xml
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas      1037 Jan  9 22:03 memory_monitor_summary.json
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas   1516240 Jan  9 22:03 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas   1356747 Jan  9 22:03 log.47898826._029393.job.log.tgz.1
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas      7823 Jan  9 22:04 heartbeat.json
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas        95 Jan  9 22:05 pilot_heartbeat.json
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 22:05 boinc_mmap_file
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas        28 Jan  9 22:05 wrapper_checkpoint.txt
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas      5009 Jan  9 22:05 pilotlog.txt
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas   9913607 Jan  9 22:05 log.47898826._029393.job.log.1
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas       357 Jan  9 22:05 output.list
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas       620 Jan  9 22:05 runtime_log
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas  11284480 Jan  9 22:05 result.tar.gz
[2026-01-09 22:05:40] -rw-------. 1 boincer umatlas       656 Jan  9 22:05 33kNDmMi7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmirfKDmwmRCjn.diag
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas      9340 Jan  9 22:05 runtime_log.err
[2026-01-09 22:05:40] -rw-r--r--. 1 boincer umatlas     21156 Jan  9 22:05 stderr.txt
[2026-01-09 22:05:41] HITS file was successfully produced:
[2026-01-09 22:05:41] -rw-------. 1 boincer umatlas 227309959 Jan  9 21:58 shared/HITS.pool.root.1
[2026-01-09 22:05:41]  *** Contents of shared directory: ***
[2026-01-09 22:05:41] total 454212
[2026-01-09 22:05:41] -rw-r--r--. 2 boincer umatlas 225896788 Jan  9 00:04 ATLAS.root_0
[2026-01-09 22:05:41] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:04 start_atlas.sh
[2026-01-09 22:05:41] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 00:04 input.tar.gz
[2026-01-09 22:05:41] -rw-------. 1 boincer umatlas 227309959 Jan  9 21:58 HITS.pool.root.1
[2026-01-09 22:05:41] -rw-------. 1 boincer umatlas  11284480 Jan  9 22:05 result.tar.gz
22:05:42 (2438016): run_atlas exited; CPU time 74531.147755
22:05:42 (2438016): called boinc_finish(0)

</stderr_txt>
]]>

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