Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:11 (984456): wrapper (7.7.26015): starting
00:05:11 (984456): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:05:11] Arguments: --nthreads 12
[2026-01-09 00:05:11] Threads: 12
[2026-01-09 00:05:11] Checking for CVMFS
[2026-01-09 00:05:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:05:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:05:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:05:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:05:16] 2.13.3.0 13037 29634 288044 154931 0 145 24923869 32935936 18145 16776704 0 27421600 99.581 28916504 13778 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:05:16] CVMFS is ok
[2026-01-09 00:05:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:05:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:05:16] Further information can be found at the LHC@home message board.
[2026-01-09 00:05:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:05:16] Checking for apptainer binary...
[2026-01-09 00:05:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:05:16] Running /usr/bin/apptainer --version
[2026-01-09 00:05:16] apptainer version 1.4.5-2.el9
[2026-01-09 00:05:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:05:17] c6-12-25-3.aglt2.org
[2026-01-09 00:05:17] apptainer works
[2026-01-09 00:05:17] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:05:17] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:05:17] Starting ATLAS job with PandaID=6963152613
[2026-01-09 00:05:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:03:38]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:03:38] 2026-01-10 01:02:25,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:03:38] 2026-01-10 01:02:27,212 | INFO     | time since job start (71717s) is within the limit (349056.0s)
[2026-01-09 20:03:38] 2026-01-10 01:02:28,464 | INFO     | monitor loop #2856: job 0:6963152613 is in state 'finished'
[2026-01-09 20:03:38] 2026-01-10 01:02:28,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:03:38] 2026-01-10 01:02:29,219 | INFO     | time since job start (71719s) is within the limit (349056.0s)
[2026-01-09 20:03:38] 2026-01-10 01:02:29,921 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 20:03:38] 2026-01-10 01:02:30,041 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 1000.0001874999998
[2026-01-09 20:03:38] 2026-01-10 01:02:30,214 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963152613/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:03:38] 2026-01-10 01:02:30,216 | INFO     | extracted standard info from prmon json
[2026-01-09 20:03:38] 2026-01-10 01:02:30,216 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:03:38] 2026-01-10 01:02:30,216 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:03:38] 2026-01-10 01:02:30,217 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:03:38] 2026-01-10 01:02:30,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:03:38] 2026-01-10 01:02:30,270 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:03:38] 2026-01-10 01:02:30,274 | INFO     | sum of square deviations: 497893281371.93665
[2026-01-09 20:03:38] 2026-01-10 01:02:30,348 | INFO     | sum of deviations: 2927803707490.6626
[2026-01-09 20:03:38] 2026-01-10 01:02:30,348 | INFO     | mean x: 1767971134.0657558
[2026-01-09 20:03:38] 2026-01-10 01:02:30,348 | INFO     | mean y: 2609731.4978650725
[2026-01-09 20:03:38] 2026-01-10 01:02:30,349 | INFO     | intersect: -10393739515.857027
[2026-01-09 20:03:38] 2026-01-10 01:02:30,353 | INFO     | chi2: 15.068786399675822
[2026-01-09 20:03:38] 2026-01-10 01:02:30,357 | INFO     | sum of square deviations: 491543087569.3001
[2026-01-09 20:03:38] 2026-01-10 01:02:30,803 | INFO     | sum of deviations: 3248251813865.9995
[2026-01-09 20:03:38] 2026-01-10 01:02:30,804 | INFO     | mean x: 1767970981.5728989
[2026-01-09 20:03:38] 2026-01-10 01:02:30,804 | INFO     | mean y: 2617420.253001715
[2026-01-09 20:03:38] 2026-01-10 01:02:30,804 | INFO     | intersect: -11680620718.96093
[2026-01-09 20:03:38] 2026-01-10 01:02:30,841 | INFO     | chi2: 12.014266317923827
[2026-01-09 20:03:38] 2026-01-10 01:02:30,842 | INFO     | current chi2=12.014266317923827 (change=20.270511511250223 %)
[2026-01-09 20:03:38] 2026-01-10 01:02:30,842 | INFO     | right removable region: 1165
[2026-01-09 20:03:38] 2026-01-10 01:02:30,866 | INFO     | sum of square deviations: 491541754713.00867
[2026-01-09 20:03:38] 2026-01-10 01:02:30,988 | INFO     | monitor loop #2857: job 0:6963152613 is in state 'finished'
[2026-01-09 20:03:38] 2026-01-10 01:02:30,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:03:38] 2026-01-10 01:02:31,290 | INFO     | time since job start (71721s) is within the limit (349056.0s)
[2026-01-09 20:03:38] 2026-01-10 01:02:31,582 | INFO     | sum of deviations: 2517924779620.631
[2026-01-09 20:03:38] 2026-01-10 01:02:31,582 | INFO     | mean x: 1767971286.574614
[2026-01-09 20:03:38] 2026-01-10 01:02:31,583 | INFO     | mean y: 2619571.521440823
[2026-01-09 20:03:38] 2026-01-10 01:02:31,583 | INFO     | intersect: -9053821045.050611
[2026-01-09 20:03:38] 2026-01-10 01:02:31,607 | INFO     | chi2: 11.08756987484881
[2026-01-09 20:03:38] 2026-01-10 01:02:31,608 | INFO     | current chi2=11.08756987484881 (change=26.42028640682478 %)
[2026-01-09 20:03:38] 2026-01-10 01:02:31,632 | INFO     | sum of square deviations: 485244532758.0651
[2026-01-09 20:03:38] 2026-01-10 01:02:32,107 | INFO     | sum of deviations: 2173129929888.3203
[2026-01-09 20:03:38] 2026-01-10 01:02:32,107 | INFO     | mean x: 1767971439.0826874
[2026-01-09 20:03:38] 2026-01-10 01:02:32,107 | INFO     | mean y: 2627920.986218777
[2026-01-09 20:03:38] 2026-01-10 01:02:32,108 | INFO     | intersect: -7915094773.632757
[2026-01-09 20:03:38] 2026-01-10 01:02:32,124 | INFO     | chi2: 8.393368628734585
[2026-01-09 20:03:38] 2026-01-10 01:02:32,124 | INFO     | current chi2=8.393368628734585 (change=24.29929440377902 %)
[2026-01-09 20:03:38] 2026-01-10 01:02:32,125 | INFO     | left removable region: 20
[2026-01-09 20:03:38] 2026-01-10 01:02:32,131 | INFO     | sum of square deviations: 465457620122.62366
[2026-01-09 20:03:38] 2026-01-10 01:02:32,347 | INFO     | sum of deviations: 1991900151257.6265
[2026-01-09 20:03:38] 2026-01-10 01:02:32,347 | INFO     | mean x: 1767971561.0951965
[2026-01-09 20:03:38] 2026-01-10 01:02:32,364 | INFO     | mean y: 2648053.1502183406
[2026-01-09 20:03:38] 2026-01-10 01:02:32,364 | INFO     | intersect: -7563288495.567022
[2026-01-09 20:03:38] 2026-01-10 01:02:32,384 | INFO     | chi2: 2.409900319159039
[2026-01-09 20:03:38] 2026-01-10 01:02:32,385 | INFO     | current memory leak: 4.28 B/s (using 1145 data points, chi2=2.41)
[2026-01-09 20:03:38] 2026-01-10 01:02:32,387 | INFO     | could have reported an average CPU frequency of 999 MHz (42 samples)
[2026-01-09 20:03:38] 2026-01-10 01:02:32,402 | INFO     | ..............................
[2026-01-09 20:03:38] 2026-01-10 01:02:32,402 | INFO     | . Timing measurements:
[2026-01-09 20:03:38] 2026-01-10 01:02:32,402 | INFO     | . get job = 0 s
[2026-01-09 20:03:38] 2026-01-10 01:02:32,403 | INFO     | . initial setup = 8 s
[2026-01-09 20:03:38] 2026-01-10 01:02:32,403 | INFO     | . payload setup = 67 s
[2026-01-09 20:03:38] 2026-01-10 01:02:32,403 | INFO     | . stage-in = 0 s
[2026-01-09 20:03:38] 2026-01-10 01:02:32,403 | INFO     | . payload execution = 71478 s
[2026-01-09 20:03:38] 2026-01-10 01:02:32,403 | INFO     | . stage-out = 17 s
[2026-01-09 20:03:38] 2026-01-10 01:02:32,404 | INFO     | . log creation = 4 s
[2026-01-09 20:03:38] 2026-01-10 01:02:32,404 | INFO     | ..............................
[2026-01-09 20:03:38] 2026-01-10 01:02:33,337 | INFO     | time since job start (71723s) is within the limit (349056.0s)
[2026-01-09 20:03:38] 2026-01-10 01:02:33,719 | INFO     | 
[2026-01-09 20:03:38] 2026-01-10 01:02:33,719 | INFO     | job summary report
[2026-01-09 20:03:38] 2026-01-10 01:02:33,719 | INFO     | --------------------------------------------------
[2026-01-09 20:03:38] 2026-01-10 01:02:33,720 | INFO     | PanDA job id: 6963152613
[2026-01-09 20:03:38] 2026-01-10 01:02:33,720 | INFO     | task id: 47898826
[2026-01-09 20:03:38] 2026-01-10 01:02:33,720 | INFO     | errors: (none)
[2026-01-09 20:03:38] 2026-01-10 01:02:33,720 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:03:38] 2026-01-10 01:02:33,720 | INFO     | pilot state: finished 
[2026-01-09 20:03:38] 2026-01-10 01:02:33,721 | INFO     | transexitcode: 0
[2026-01-09 20:03:38] 2026-01-10 01:02:33,721 | INFO     | exeerrorcode: 0
[2026-01-09 20:03:38] 2026-01-10 01:02:33,721 | INFO     | exeerrordiag: 
[2026-01-09 20:03:38] 2026-01-10 01:02:33,721 | INFO     | exitcode: 0
[2026-01-09 20:03:38] 2026-01-10 01:02:33,721 | INFO     | exitmsg: OK
[2026-01-09 20:03:38] 2026-01-10 01:02:33,722 | INFO     | cpuconsumptiontime: 156729 s
[2026-01-09 20:03:38] 2026-01-10 01:02:33,722 | INFO     | nevents: 400
[2026-01-09 20:03:38] 2026-01-10 01:02:33,722 | INFO     | neventsw: 0
[2026-01-09 20:03:38] 2026-01-10 01:02:33,722 | INFO     | pid: 1034318
[2026-01-09 20:03:38] 2026-01-10 01:02:33,722 | INFO     | pgrp: 1034318
[2026-01-09 20:03:38] 2026-01-10 01:02:33,741 | INFO     | corecount: 12
[2026-01-09 20:03:38] 2026-01-10 01:02:33,741 | INFO     | event service: False
[2026-01-09 20:03:38] 2026-01-10 01:02:33,741 | INFO     | sizes: {0: 2283140, 1: 2283825, 3: 2283853, 6: 2284024, 7: 2284052, 18: 2284080, 30: 2284236, 41: 2284264, 49: 2284554, 52: 2284582, 71550: 2338452, 71551: 2338731
[2026-01-09 20:03:38] 2026-01-10 01:02:33,742 | INFO     | --------------------------------------------------
[2026-01-09 20:03:38] 2026-01-10 01:02:33,742 | INFO     | 
[2026-01-09 20:03:38] 2026-01-10 01:02:33,742 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 20:03:38] 2026-01-10 01:02:34,026 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,027 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,027 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,027 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,050 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,050 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,050 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,051 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,051 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:03:38] 2026-01-10 01:02:34,051 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,051 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:03:38] 2026-01-10 01:02:34,052 | INFO     | job 6963152613 has completed (purged errors)
[2026-01-09 20:03:38] 2026-01-10 01:02:34,052 | INFO     | overall cleanup function is called
[2026-01-09 20:03:38] 2026-01-10 01:02:35,111 | INFO     | --- collectZombieJob: --- 10, [1034318]
[2026-01-09 20:03:38] 2026-01-10 01:02:35,111 | INFO     | zombie collector waiting for pid 1034318
[2026-01-09 20:03:38] 2026-01-10 01:02:35,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:03:38] 2026-01-10 01:02:35,112 | INFO     | collected zombie processes
[2026-01-09 20:03:38] 2026-01-10 01:02:35,112 | INFO     | will attempt to kill all subprocesses of pid=1034318
[2026-01-09 20:03:38] 2026-01-10 01:02:38,241 | INFO     | process IDs to be killed: [1034318] (in reverse order)
[2026-01-09 20:03:38] 2026-01-10 01:02:38,697 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:03:38] 2026-01-10 01:02:38,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:03:38] 2026-01-10 01:02:38,729 | INFO     | did not find any defunct processes belonging to 1034318
[2026-01-09 20:03:38] 2026-01-10 01:02:38,759 | INFO     | did not find any defunct processes belonging to 1034318
[2026-01-09 20:03:38] 2026-01-10 01:02:38,759 | INFO     | ready for new job
[2026-01-09 20:03:38] 2026-01-10 01:02:38,759 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:03:38] 2026-01-10 01:02:38,767 | INFO     | ***************************************
[2026-01-09 20:03:38] 2026-01-10 01:02:38,769 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:03:38] 2026-01-10 01:02:38,770 | INFO     | ***************************************
[2026-01-09 20:03:38] 2026-01-10 01:02:38,770 | INFO     | 
[2026-01-09 20:03:38] 2026-01-10 01:02:38,785 | INFO     | architecture information:
[2026-01-09 20:03:38] 2026-01-10 01:02:38,788 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:03:38] 2026-01-10 01:02:38,932 | INFO     | cat /etc/os-release:
[2026-01-09 20:03:38] NAME="CentOS Linux"
[2026-01-09 20:03:38] VERSION="7 (Core)"
[2026-01-09 20:03:38] ID="centos"
[2026-01-09 20:03:38] ID_LIKE="rhel fedora"
[2026-01-09 20:03:38] VERSION_ID="7"
[2026-01-09 20:03:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:03:38] ANSI_COLOR="0;31"
[2026-01-09 20:03:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:03:38] HOME_URL="https://www.centos.org/"
[2026-01-09 20:03:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:03:38] 
[2026-01-09 20:03:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:03:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:03:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:03:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:03:38] 
[2026-01-09 20:03:38] 2026-01-10 01:02:38,933 | INFO     | ***************************************
[2026-01-09 20:03:38] 2026-01-10 01:02:39,439 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 20:03:38] 2026-01-10 01:02:39,515 | INFO     | sufficient remaining disk space (94788124672 B)
[2026-01-09 20:03:38] 2026-01-10 01:02:39,516 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:03:38] 2026-01-10 01:02:39,517 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:03:38] 2026-01-10 01:02:39,517 | INFO     | update_server=False
[2026-01-09 20:03:38] 2026-01-10 01:02:39,517 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:03:38] 2026-01-10 01:02:39,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:03:38] 2026-01-10 01:02:39,643 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:03:38] 2026-01-10 01:02:39,643 | INFO     | aborting loop
[2026-01-09 20:03:38] 2026-01-10 01:02:39,965 | INFO     | all data control threads have been joined
[2026-01-09 20:03:38] 2026-01-10 01:02:40,523 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:40,544 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:40,650 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:40,774 | INFO     | all payload control threads have been joined
[2026-01-09 20:03:38] 2026-01-10 01:02:40,817 | INFO     | [job] validate thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:40,894 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:40,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:03:38] 2026-01-10 01:02:40,971 | INFO     | [data] control thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:40,977 | INFO     | all job control threads have been joined
[2026-01-09 20:03:38] 2026-01-10 01:02:41,052 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:41,053 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:41,336 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:41,435 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:41,697 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:41,703 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:41,780 | INFO     | [payload] control thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:41,983 | INFO     | [job] control thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:42,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:03:38] 2026-01-10 01:02:42,941 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:02:46,854 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:03:38] 2026-01-10 01:03:08,833 | INFO     | PID=996992 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 20:03:38] 2026-01-10 01:03:08,834 | INFO     | .. there are 16 such processes running
[2026-01-09 20:03:38] 2026-01-10 01:03:08,834 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:03:38] 2026-01-10 01:03:08,835 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:03:38] 2026-01-10 01:03:08,835 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:03:38] 2026-01-10 01:03:27,262 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:03:38] 2026-01-10 01:03:27,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502300571456)>', '<ExcThread(monitor, started 140501927847680)>']
[2026-01-09 20:03:38] 2026-01-10 01:03:27,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:03:38] 2026-01-10 01:03:27,957 | INFO     | [monitor] control thread has ended
[2026-01-09 20:03:38] 2026-01-10 01:03:32,751 | INFO     | all workflow threads have been joined
[2026-01-09 20:03:38] 2026-01-10 01:03:32,751 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:03:38] 2026-01-10 01:03:32,752 | INFO     | traces error code: 0
[2026-01-09 20:03:38] 2026-01-10 01:03:32,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:03:38] 2026-01-10 01:03:35,685 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:03:38] 2026-01-10 01:03:35,739 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:03:38] 2026-01-10 01:03:35,756 [wrapper] pilotpid: 996992
[2026-01-09 20:03:38] 2026-01-10 01:03:35,800 [wrapper] Pilot exit status: 0
[2026-01-09 20:03:38] 2026-01-10 01:03:35,955 [wrapper] pandaids: 6963152613
[2026-01-09 20:03:38] 2026-01-10 01:03:37,348 [wrapper] cleanup supervisor_pilot 3781017 996993
[2026-01-09 20:03:38] 2026-01-10 01:03:37,381 [wrapper] Test setup, not cleaning
[2026-01-09 20:03:38] 2026-01-10 01:03:37,419 [wrapper] apfmon messages muted
[2026-01-09 20:03:38] 2026-01-10 01:03:37,445 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:03:38] 2026-01-10 01:03:37,490 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:03:38]  *** Error codes and diagnostics ***
[2026-01-09 20:03:38]     "exeErrorCode": 0,
[2026-01-09 20:03:38]     "exeErrorDiag": "",
[2026-01-09 20:03:38]     "pilotErrorCode": 0,
[2026-01-09 20:03:38]     "pilotErrorDiag": "",
[2026-01-09 20:03:38]  *** Listing of results directory ***
[2026-01-09 20:03:38] total 451240
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 20:03:38] -rwx------. 1 boincer umatlas     36322 Jan  8 11:04 runpilot2-wrapper.sh
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:04 queuedata.json
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:03:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:05 run_atlas
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:05 job.xml
[2026-01-09 20:03:38] -rw-r--r--. 2 boincer umatlas 223049276 Jan  9 00:05 EVNT.47898824._000875.pool.root.1
[2026-01-09 20:03:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:05 start_atlas.sh
[2026-01-09 20:03:38] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:05 shared
[2026-01-09 20:03:38] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 00:05 input.tar.gz
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:05 boinc_lockfile
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 00:05 pandaJob.out
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas        57 Jan  9 00:05 setup.sh.local
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas    989771 Jan  9 00:07 agis_schedconf.cvmfs.json
[2026-01-09 20:03:38] drwx------. 5 boincer umatlas      4096 Jan  9 00:07 pilot3
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas 219060950 Jan  9 19:56 HITS.47898826._029371.pool.root.1
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas       532 Jan  9 19:56 boinc_task_state.xml
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas      6859 Jan  9 20:00 init_data.xml
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas      1037 Jan  9 20:01 memory_monitor_summary.json
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:01 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas   1121204 Jan  9 20:01 log.47898826._029371.job.log.tgz.1
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas      7835 Jan  9 20:02 heartbeat.json
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas        95 Jan  9 20:02 pilot_heartbeat.json
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:03 boinc_mmap_file
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas        29 Jan  9 20:03 wrapper_checkpoint.txt
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas      4823 Jan  9 20:03 pilotlog.txt
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas   6898348 Jan  9 20:03 log.47898826._029371.job.log.1
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas       357 Jan  9 20:03 output.list
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:03 runtime_log
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas   8038400 Jan  9 20:03 result.tar.gz
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas      9355 Jan  9 20:03 runtime_log.err
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas       662 Jan  9 20:03 Gu8LDmsf7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmTlfKDmxlK6Bn.diag
[2026-01-09 20:03:38] -rw-r--r--. 1 boincer umatlas     21465 Jan  9 20:03 stderr.txt
[2026-01-09 20:03:38] HITS file was successfully produced:
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas 219060950 Jan  9 19:56 shared/HITS.pool.root.1
[2026-01-09 20:03:38]  *** Contents of shared directory: ***
[2026-01-09 20:03:38] total 440208
[2026-01-09 20:03:38] -rw-r--r--. 2 boincer umatlas 223049276 Jan  9 00:05 ATLAS.root_0
[2026-01-09 20:03:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:05 start_atlas.sh
[2026-01-09 20:03:38] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 00:05 input.tar.gz
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas 219060950 Jan  9 19:56 HITS.pool.root.1
[2026-01-09 20:03:38] -rw-------. 1 boincer umatlas   8038400 Jan  9 20:03 result.tar.gz
20:04:01 (984456): run_atlas exited; CPU time 162416.828204
20:04:01 (984456): called boinc_finish(0)

</stderr_txt>
]]>

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