Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:24 (984958): wrapper (7.7.26015): starting
00:05:24 (984958): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:05:24] Arguments: --nthreads 12
[2026-01-09 00:05:24] Threads: 12
[2026-01-09 00:05:24] Checking for CVMFS
[2026-01-09 00:05:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:05:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:05:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:05:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:05:28] 2.13.3.0 13037 29634 288056 154931 0 145 24923869 32935936 18176 16776704 0 27422921 99.581 28916504 13778 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:05:28] CVMFS is ok
[2026-01-09 00:05:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:05:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:05:28] Further information can be found at the LHC@home message board.
[2026-01-09 00:05:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:05:28] Checking for apptainer binary...
[2026-01-09 00:05:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:05:28] Running /usr/bin/apptainer --version
[2026-01-09 00:05:28] apptainer version 1.4.5-2.el9
[2026-01-09 00:05:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:05:30] c6-12-25-3.aglt2.org
[2026-01-09 00:05:30] apptainer works
[2026-01-09 00:05:30] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:05:30] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:05:30] Starting ATLAS job with PandaID=6963152356
[2026-01-09 00:05:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:18:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:18:22] 2026-01-09 18:17:30,867 | INFO     | extracted standard info from prmon json
[2026-01-09 13:18:22] 2026-01-09 18:17:30,868 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:18:22] 2026-01-09 18:17:30,868 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:18:22] 2026-01-09 18:17:30,889 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:18:22] 2026-01-09 18:17:30,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:18:22] 2026-01-09 18:17:31,070 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:18:22] 2026-01-09 18:17:31,073 | INFO     | sum of square deviations: 143218497846.9132
[2026-01-09 13:18:22] 2026-01-09 18:17:31,233 | INFO     | sum of deviations: 463961586244.88574
[2026-01-09 13:18:22] 2026-01-09 18:17:31,234 | INFO     | mean x: 1767958995.4450195
[2026-01-09 13:18:22] 2026-01-09 18:17:31,234 | INFO     | mean y: 2630748.0090556275
[2026-01-09 13:18:22] 2026-01-09 18:17:31,234 | INFO     | intersect: -5724737380.229312
[2026-01-09 13:18:22] 2026-01-09 18:17:31,257 | INFO     | chi2: 10.732858187225025
[2026-01-09 13:18:22] 2026-01-09 18:17:31,260 | INFO     | sum of square deviations: 140457757376.82812
[2026-01-09 13:18:22] 2026-01-09 18:17:31,599 | INFO     | sum of deviations: 723204660444.6577
[2026-01-09 13:18:22] 2026-01-09 18:17:31,599 | INFO     | mean x: 1767958842.9609375
[2026-01-09 13:18:22] 2026-01-09 18:17:31,599 | INFO     | mean y: 2645067.0234375
[2026-01-09 13:18:22] 2026-01-09 18:17:31,600 | INFO     | intersect: -9100419787.368362
[2026-01-09 13:18:22] 2026-01-09 18:17:31,710 | INFO     | chi2: 7.137609109388184
[2026-01-09 13:18:22] 2026-01-09 18:17:31,711 | INFO     | current chi2=7.137609109388184 (change=33.49759230133265 %)
[2026-01-09 13:18:22] 2026-01-09 18:17:31,713 | INFO     | sum of square deviations: 137732504402.08667
[2026-01-09 13:18:22] 2026-01-09 18:17:31,851 | INFO     | monitor loop #1864: job 0:6963152356 is in state 'finished'
[2026-01-09 13:18:22] 2026-01-09 18:17:31,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:18:22] 2026-01-09 18:17:32,095 | INFO     | sum of deviations: 827451734910.3081
[2026-01-09 13:18:22] 2026-01-09 18:17:32,096 | INFO     | mean x: 1767958690.4705112
[2026-01-09 13:18:22] 2026-01-09 18:17:32,096 | INFO     | mean y: 2650876.213630406
[2026-01-09 13:18:22] 2026-01-09 18:17:32,142 | INFO     | intersect: -10618665363.044542
[2026-01-09 13:18:22] 2026-01-09 18:17:32,145 | INFO     | chi2: 5.602507208303724
[2026-01-09 13:18:22] 2026-01-09 18:17:32,145 | INFO     | current chi2=5.602507208303724 (change=21.50722850688646 %)
[2026-01-09 13:18:22] 2026-01-09 18:17:32,158 | INFO     | right removable region: 762
[2026-01-09 13:18:22] 2026-01-09 18:17:32,160 | INFO     | sum of square deviations: 140456651389.74857
[2026-01-09 13:18:22] 2026-01-09 18:17:32,468 | INFO     | sum of deviations: 201147324441.15192
[2026-01-09 13:18:22] 2026-01-09 18:17:32,468 | INFO     | mean x: 1767959147.9596355
[2026-01-09 13:18:22] 2026-01-09 18:17:32,468 | INFO     | mean y: 2645254.6822916665
[2026-01-09 13:18:22] 2026-01-09 18:17:32,482 | INFO     | intersect: -2529240909.587283
[2026-01-09 13:18:22] 2026-01-09 18:17:32,485 | INFO     | chi2: 7.072237603123065
[2026-01-09 13:18:22] 2026-01-09 18:17:32,485 | INFO     | current chi2=7.072237603123065 (change=34.106670564780956 %)
[2026-01-09 13:18:22] 2026-01-09 18:17:32,500 | INFO     | sum of square deviations: 137730760539.96323
[2026-01-09 13:18:22] 2026-01-09 18:17:32,815 | INFO     | sum of deviations: 65225618485.28431
[2026-01-09 13:18:22] 2026-01-09 18:17:32,815 | INFO     | mean x: 1767959300.46789
[2026-01-09 13:18:22] 2026-01-09 18:17:32,816 | INFO     | mean y: 2652852.0524246395
[2026-01-09 13:18:22] 2026-01-09 18:17:32,816 | INFO     | intersect: -834605567.0381254
[2026-01-09 13:18:22] 2026-01-09 18:17:32,834 | INFO     | chi2: 6.086958396117586
[2026-01-09 13:18:22] 2026-01-09 18:17:32,834 | INFO     | current chi2=6.086958396117586 (change=13.931647411992836 %)
[2026-01-09 13:18:22] 2026-01-09 18:17:32,835 | INFO     | left removable region: 20
[2026-01-09 13:18:22] 2026-01-09 18:17:32,837 | INFO     | sum of square deviations: 126668299473.86505
[2026-01-09 13:18:22] 2026-01-09 18:17:33,119 | INFO     | sum of deviations: 286572182996.2319
[2026-01-09 13:18:22] 2026-01-09 18:17:33,119 | INFO     | mean x: 1767959270.013477
[2026-01-09 13:18:22] 2026-01-09 18:17:33,120 | INFO     | mean y: 2681798.576819407
[2026-01-09 13:18:22] 2026-01-09 18:17:33,120 | INFO     | intersect: -3997118858.4196157
[2026-01-09 13:18:22] 2026-01-09 18:17:33,149 | INFO     | chi2: 0.3728266160887595
[2026-01-09 13:18:22] 2026-01-09 18:17:33,149 | INFO     | current memory leak: 2.26 B/s (using 742 data points, chi2=0.37)
[2026-01-09 13:18:22] 2026-01-09 18:17:33,155 | INFO     | could have reported an average CPU frequency of 1000 MHz (29 samples)
[2026-01-09 13:18:22] 2026-01-09 18:17:33,156 | INFO     | ..............................
[2026-01-09 13:18:22] 2026-01-09 18:17:33,156 | INFO     | . Timing measurements:
[2026-01-09 13:18:22] 2026-01-09 18:17:33,156 | INFO     | . get job = 0 s
[2026-01-09 13:18:22] 2026-01-09 18:17:33,157 | INFO     | . initial setup = 10 s
[2026-01-09 13:18:22] 2026-01-09 18:17:33,157 | INFO     | . payload setup = 64 s
[2026-01-09 13:18:22] 2026-01-09 18:17:33,157 | INFO     | . stage-in = 1 s
[2026-01-09 13:18:22] 2026-01-09 18:17:33,157 | INFO     | . payload execution = 47176 s
[2026-01-09 13:18:22] 2026-01-09 18:17:33,157 | INFO     | . stage-out = 19 s
[2026-01-09 13:18:22] 2026-01-09 18:17:33,158 | INFO     | . log creation = 5 s
[2026-01-09 13:18:22] 2026-01-09 18:17:33,158 | INFO     | ..............................
[2026-01-09 13:18:22] 2026-01-09 18:17:34,989 | INFO     | 
[2026-01-09 13:18:22] 2026-01-09 18:17:35,009 | INFO     | job summary report
[2026-01-09 13:18:22] 2026-01-09 18:17:35,009 | INFO     | --------------------------------------------------
[2026-01-09 13:18:22] 2026-01-09 18:17:35,009 | INFO     | PanDA job id: 6963152356
[2026-01-09 13:18:22] 2026-01-09 18:17:35,009 | INFO     | task id: 47898826
[2026-01-09 13:18:22] 2026-01-09 18:17:35,010 | INFO     | errors: (none)
[2026-01-09 13:18:22] 2026-01-09 18:17:35,010 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:18:22] 2026-01-09 18:17:35,010 | INFO     | pilot state: finished 
[2026-01-09 13:18:22] 2026-01-09 18:17:35,010 | INFO     | transexitcode: 0
[2026-01-09 13:18:22] 2026-01-09 18:17:35,010 | INFO     | exeerrorcode: 0
[2026-01-09 13:18:22] 2026-01-09 18:17:35,010 | INFO     | exeerrordiag: 
[2026-01-09 13:18:22] 2026-01-09 18:17:35,011 | INFO     | exitcode: 0
[2026-01-09 13:18:22] 2026-01-09 18:17:35,011 | INFO     | exitmsg: OK
[2026-01-09 13:18:22] 2026-01-09 18:17:35,011 | INFO     | cpuconsumptiontime: 158284 s
[2026-01-09 13:18:22] 2026-01-09 18:17:35,011 | INFO     | nevents: 400
[2026-01-09 13:18:22] 2026-01-09 18:17:35,011 | INFO     | neventsw: 0
[2026-01-09 13:18:22] 2026-01-09 18:17:35,011 | INFO     | pid: 1035851
[2026-01-09 13:18:22] 2026-01-09 18:17:35,011 | INFO     | pgrp: 1035851
[2026-01-09 13:18:22] 2026-01-09 18:17:35,012 | INFO     | corecount: 12
[2026-01-09 13:18:22] 2026-01-09 18:17:35,012 | INFO     | event service: False
[2026-01-09 13:18:22] 2026-01-09 18:17:35,012 | INFO     | sizes: {0: 2283741, 1: 2283797, 2: 2283853, 3: 2284024, 4: 2284052, 6: 2284080, 18: 2284236, 29: 2284264, 41: 2284292, 50: 2284582, 53: 2284610, 47246: 2328232, 47
[2026-01-09 13:18:22] 2026-01-09 18:17:35,012 | INFO     | --------------------------------------------------
[2026-01-09 13:18:22] 2026-01-09 18:17:35,012 | INFO     | 
[2026-01-09 13:18:22] 2026-01-09 18:17:35,057 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2026-01-09 13:18:22] 2026-01-09 18:17:35,246 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,246 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,247 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,247 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,254 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,254 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:18:22] 2026-01-09 18:17:35,254 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,255 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:18:22] 2026-01-09 18:17:35,255 | INFO     | job 6963152356 has completed (purged errors)
[2026-01-09 13:18:22] 2026-01-09 18:17:35,255 | INFO     | overall cleanup function is called
[2026-01-09 13:18:22] 2026-01-09 18:17:36,430 | INFO     | --- collectZombieJob: --- 10, [1035851]
[2026-01-09 13:18:22] 2026-01-09 18:17:36,430 | INFO     | zombie collector waiting for pid 1035851
[2026-01-09 13:18:22] 2026-01-09 18:17:36,430 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:18:22] 2026-01-09 18:17:36,431 | INFO     | collected zombie processes
[2026-01-09 13:18:22] 2026-01-09 18:17:36,431 | INFO     | will attempt to kill all subprocesses of pid=1035851
[2026-01-09 13:18:22] 2026-01-09 18:17:40,330 | INFO     | PID=996978 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 13:18:22] 2026-01-09 18:17:40,330 | INFO     | .. there are 17 such processes running
[2026-01-09 13:18:22] 2026-01-09 18:17:41,787 | INFO     | process IDs to be killed: [1035851] (in reverse order)
[2026-01-09 13:18:22] 2026-01-09 18:17:42,610 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:18:22] 2026-01-09 18:17:42,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:18:22] 2026-01-09 18:17:42,816 | INFO     | did not find any defunct processes belonging to 1035851
[2026-01-09 13:18:22] 2026-01-09 18:17:43,008 | INFO     | did not find any defunct processes belonging to 1035851
[2026-01-09 13:18:22] 2026-01-09 18:17:43,009 | INFO     | ready for new job
[2026-01-09 13:18:22] 2026-01-09 18:17:43,009 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:18:22] 2026-01-09 18:17:43,056 | INFO     | ***************************************
[2026-01-09 13:18:22] 2026-01-09 18:17:43,082 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:18:22] 2026-01-09 18:17:43,082 | INFO     | ***************************************
[2026-01-09 13:18:22] 2026-01-09 18:17:43,082 | INFO     | 
[2026-01-09 13:18:22] 2026-01-09 18:17:43,159 | INFO     | architecture information:
[2026-01-09 13:18:22] 2026-01-09 18:17:43,192 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:18:22] 2026-01-09 18:17:43,316 | INFO     | cat /etc/os-release:
[2026-01-09 13:18:22] NAME="CentOS Linux"
[2026-01-09 13:18:22] VERSION="7 (Core)"
[2026-01-09 13:18:22] ID="centos"
[2026-01-09 13:18:22] ID_LIKE="rhel fedora"
[2026-01-09 13:18:22] VERSION_ID="7"
[2026-01-09 13:18:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:18:22] ANSI_COLOR="0;31"
[2026-01-09 13:18:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:18:22] HOME_URL="https://www.centos.org/"
[2026-01-09 13:18:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:18:22] 
[2026-01-09 13:18:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:18:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:18:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:18:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:18:22] 
[2026-01-09 13:18:22] 2026-01-09 18:17:43,317 | INFO     | ***************************************
[2026-01-09 13:18:22] 2026-01-09 18:17:43,821 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2026-01-09 13:18:22] 2026-01-09 18:17:43,932 | INFO     | sufficient remaining disk space (93742694400 B)
[2026-01-09 13:18:22] 2026-01-09 18:17:43,933 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:18:22] 2026-01-09 18:17:43,933 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:18:22] 2026-01-09 18:17:43,933 | INFO     | update_server=False
[2026-01-09 13:18:22] 2026-01-09 18:17:43,934 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:18:22] 2026-01-09 18:17:43,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:18:22] 2026-01-09 18:17:43,942 | INFO     | aborting loop
[2026-01-09 13:18:22] 2026-01-09 18:17:43,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:18:22] 2026-01-09 18:17:44,296 | INFO     | all job control threads have been joined
[2026-01-09 13:18:22] 2026-01-09 18:17:44,357 | INFO     | all data control threads have been joined
[2026-01-09 13:18:22] 2026-01-09 18:17:44,912 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:18:22] 2026-01-09 18:17:44,949 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:44,954 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:44,959 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:44,971 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:45,080 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:45,302 | INFO     | [job] control thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:45,363 | INFO     | [data] control thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:45,401 | INFO     | all payload control threads have been joined
[2026-01-09 13:18:22] 2026-01-09 18:17:45,565 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:45,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:18:22] 2026-01-09 18:17:45,855 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:46,076 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:46,172 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:46,253 | INFO     | [job] validate thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:46,259 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:46,407 | INFO     | [payload] control thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:46,918 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:49,763 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:18:22] 2026-01-09 18:17:50,634 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:18:22] 2026-01-09 18:17:51,645 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683289782080)>', '<ExcThread(monitor, started 140682920453888)>']
[2026-01-09 13:18:22] 2026-01-09 18:17:56,671 | INFO     | all workflow threads have been joined
[2026-01-09 13:18:22] 2026-01-09 18:17:56,671 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:18:22] 2026-01-09 18:17:56,672 | INFO     | traces error code: 0
[2026-01-09 13:18:22] 2026-01-09 18:17:56,672 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:18:22] 2026-01-09 18:18:18,866 | INFO     | PID=996978 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 13:18:22] 2026-01-09 18:18:18,867 | INFO     | .. there are 17 such processes running
[2026-01-09 13:18:22] 2026-01-09 18:18:18,890 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:18:22] 2026-01-09 18:18:18,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:18:22] 2026-01-09 18:18:18,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:18:22] 2026-01-09 18:18:18,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:18:22] 2026-01-09 18:18:18,891 | CRITICAL | thread 'MainThread' is not alive
[2026-01-09 13:18:22] 2026-01-09 18:18:18,891 | INFO     | [monitor] control thread has ended
[2026-01-09 13:18:22] 2026-01-09 18:18:20,376 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:18:22] 2026-01-09 18:18:20,442 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:18:22] 2026-01-09 18:18:20,475 [wrapper] pilotpid: 996978
[2026-01-09 13:18:22] 2026-01-09 18:18:20,488 [wrapper] Pilot exit status: 0
[2026-01-09 13:18:22] 2026-01-09 18:18:20,693 [wrapper] pandaids: 6963152356
[2026-01-09 13:18:22] 2026-01-09 18:18:21,432 [wrapper] cleanup supervisor_pilot 2862238 996979
[2026-01-09 13:18:22] 2026-01-09 18:18:21,476 [wrapper] Test setup, not cleaning
[2026-01-09 13:18:22] 2026-01-09 18:18:21,518 [wrapper] apfmon messages muted
[2026-01-09 13:18:22] 2026-01-09 18:18:21,537 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:18:22] 2026-01-09 18:18:21,574 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:18:22]  *** Error codes and diagnostics ***
[2026-01-09 13:18:22]     "exeErrorCode": 0,
[2026-01-09 13:18:22]     "exeErrorDiag": "",
[2026-01-09 13:18:22]     "pilotErrorCode": 0,
[2026-01-09 13:18:22]     "pilotErrorDiag": "",
[2026-01-09 13:18:22]  *** Listing of results directory ***
[2026-01-09 13:18:22] total 453960
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 13:18:22] -rwx------. 1 boincer umatlas     36322 Jan  8 11:06 runpilot2-wrapper.sh
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:18:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:05 run_atlas
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:05 job.xml
[2026-01-09 13:18:22] -rw-r--r--. 2 boincer umatlas 225403720 Jan  9 00:05 EVNT.47898824._000867.pool.root.1
[2026-01-09 13:18:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:05 start_atlas.sh
[2026-01-09 13:18:22] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:05 shared
[2026-01-09 13:18:22] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 00:05 input.tar.gz
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:05 boinc_lockfile
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 00:05 pandaJob.out
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas        57 Jan  9 00:05 setup.sh.local
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas    989771 Jan  9 00:07 agis_schedconf.cvmfs.json
[2026-01-09 13:18:22] drwx------. 5 boincer umatlas      4096 Jan  9 00:07 pilot3
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas 224763828 Jan  9 13:08 HITS.47898826._029157.pool.root.1
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas       532 Jan  9 13:09 boinc_task_state.xml
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas      6859 Jan  9 13:09 init_data.xml
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas      1039 Jan  9 13:16 memory_monitor_summary.json
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas   1516240 Jan  9 13:16 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas    846066 Jan  9 13:16 log.47898826._029157.job.log.tgz.1
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas      7833 Jan  9 13:17 heartbeat.json
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 13:18 boinc_mmap_file
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas        29 Jan  9 13:18 wrapper_checkpoint.txt
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas        95 Jan  9 13:18 pilot_heartbeat.json
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas       892 Jan  9 13:18 pilotlog.txt
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas   4538594 Jan  9 13:18 log.47898826._029157.job.log.1
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas       357 Jan  9 13:18 output.list
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas       620 Jan  9 13:18 runtime_log
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas   5406720 Jan  9 13:18 result.tar.gz
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas      9355 Jan  9 13:18 runtime_log.err
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas       662 Jan  9 13:18 HYFODmAi7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmp3kKDmJzHzyn.diag
[2026-01-09 13:18:22] -rw-r--r--. 1 boincer umatlas     21260 Jan  9 13:18 stderr.txt
[2026-01-09 13:18:22] HITS file was successfully produced:
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas 224763828 Jan  9 13:08 shared/HITS.pool.root.1
[2026-01-09 13:18:22]  *** Contents of shared directory: ***
[2026-01-09 13:18:22] total 445504
[2026-01-09 13:18:22] -rw-r--r--. 2 boincer umatlas 225403720 Jan  9 00:05 ATLAS.root_0
[2026-01-09 13:18:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:05 start_atlas.sh
[2026-01-09 13:18:22] -rw-r--r--. 2 boincer umatlas    592397 Jan  9 00:05 input.tar.gz
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas 224763828 Jan  9 13:08 HITS.pool.root.1
[2026-01-09 13:18:22] -rw-------. 1 boincer umatlas   5406720 Jan  9 13:18 result.tar.gz
13:18:24 (984958): run_atlas exited; CPU time 161860.634806
13:18:24 (984958): called boinc_finish(0)

</stderr_txt>
]]>

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