Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:01:32 (2983263): wrapper (7.7.26015): starting
07:01:32 (2983263): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 07:01:32] Arguments: --nthreads 8
[2026-01-09 07:01:32] Threads: 8
[2026-01-09 07:01:32] Checking for CVMFS
[2026-01-09 07:01:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:01:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:01:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:01:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:01:34] 2.13.3.0 10612 21670 419944 154942 1 448 27025057 32935936 48669 16776704 0 216612946 99.798 107060699 28430 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 07:01:34] CVMFS is ok
[2026-01-09 07:01:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 07:01:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 07:01:34] Further information can be found at the LHC@home message board.
[2026-01-09 07:01:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:01:34] Checking for apptainer binary...
[2026-01-09 07:01:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:01:34] Running /usr/bin/apptainer --version
[2026-01-09 07:01:34] apptainer version 1.4.5-2.el9
[2026-01-09 07:01:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:01:35] lc-10-10.aglt2.org
[2026-01-09 07:01:35] apptainer works
[2026-01-09 07:01:35] Set ATHENA_PROC_NUMBER=8
[2026-01-09 07:01:35] Set ATHENA_CORE_NUMBER=8
[2026-01-09 07:01:35] Starting ATLAS job with PandaID=6963152576
[2026-01-09 07:01:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:26:47]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:26:47] 2026-01-09 18:25:31,579 | INFO     | monitor loop #1200: job 0:6963152576 is in state 'finished'
[2026-01-09 13:26:47] 2026-01-09 18:25:31,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:26:47] 2026-01-09 18:25:32,221 | INFO     | time since job start (22956s) is within the limit (349056.0s)
[2026-01-09 13:26:47] 2026-01-09 18:25:34,093 | INFO     | monitor loop #1201: job 0:6963152576 is in state 'finished'
[2026-01-09 13:26:47] 2026-01-09 18:25:34,093 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:26:47] 2026-01-09 18:25:34,231 | INFO     | time since job start (22958s) is within the limit (349056.0s)
[2026-01-09 13:26:47] 2026-01-09 18:25:35,191 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 13:26:47] 2026-01-09 18:25:35,222 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2839.7121979166673
[2026-01-09 13:26:47] 2026-01-09 18:25:35,321 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963152576/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:26:47] 2026-01-09 18:25:35,352 | INFO     | extracted standard info from prmon json
[2026-01-09 13:26:47] 2026-01-09 18:25:35,353 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:26:47] 2026-01-09 18:25:35,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:26:47] 2026-01-09 18:25:35,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:26:47] 2026-01-09 18:25:35,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:26:47] 2026-01-09 18:25:35,376 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:26:47] 2026-01-09 18:25:35,376 | INFO     | sum of square deviations: 16091677690.321724
[2026-01-09 13:26:47] 2026-01-09 18:25:35,409 | INFO     | sum of deviations: 76679755659.63016
[2026-01-09 13:26:47] 2026-01-09 18:25:35,409 | INFO     | mean x: 1767971685.1769438
[2026-01-09 13:26:47] 2026-01-09 18:25:35,410 | INFO     | mean y: 2493063.096514745
[2026-01-09 13:26:47] 2026-01-09 18:25:35,410 | INFO     | intersect: -8422211895.669173
[2026-01-09 13:26:47] 2026-01-09 18:25:35,410 | INFO     | chi2: 3.5918883478821044
[2026-01-09 13:26:47] 2026-01-09 18:25:35,469 | INFO     | sum of square deviations: 15453211430.163017
[2026-01-09 13:26:47] 2026-01-09 18:25:35,521 | INFO     | sum of deviations: 98825967019.02711
[2026-01-09 13:26:47] 2026-01-09 18:25:35,521 | INFO     | mean x: 1767971532.6793478
[2026-01-09 13:26:47] 2026-01-09 18:25:35,521 | INFO     | mean y: 2498291.779891304
[2026-01-09 13:26:47] 2026-01-09 18:25:35,521 | INFO     | intersect: -11303986264.440594
[2026-01-09 13:26:47] 2026-01-09 18:25:35,522 | INFO     | chi2: 2.9165045267496494
[2026-01-09 13:26:47] 2026-01-09 18:25:35,522 | INFO     | current chi2=2.9165045267496494 (change=18.803029373969363 %)
[2026-01-09 13:26:47] 2026-01-09 18:25:35,522 | INFO     | right removable region: 367
[2026-01-09 13:26:47] 2026-01-09 18:25:35,523 | INFO     | sum of square deviations: 15453193678.518974
[2026-01-09 13:26:47] 2026-01-09 18:25:35,577 | INFO     | sum of deviations: -23248159567.88315
[2026-01-09 13:26:47] 2026-01-09 18:25:35,578 | INFO     | mean x: 1767971837.6766305
[2026-01-09 13:26:47] 2026-01-09 18:25:35,578 | INFO     | mean y: 2516883.5135869565
[2026-01-09 13:26:47] 2026-01-09 18:25:35,578 | INFO     | intersect: 2662296618.945539
[2026-01-09 13:26:47] 2026-01-09 18:25:35,579 | INFO     | chi2: 0.8597129758656981
[2026-01-09 13:26:47] 2026-01-09 18:25:35,579 | INFO     | current chi2=0.8597129758656981 (change=76.06515312836454 %)
[2026-01-09 13:26:47] 2026-01-09 18:25:35,579 | INFO     | sum of square deviations: 14831804063.36086
[2026-01-09 13:26:47] 2026-01-09 18:25:35,671 | INFO     | sum of deviations: -39801441206.977936
[2026-01-09 13:26:47] 2026-01-09 18:25:35,672 | INFO     | mean x: 1767971990.1790633
[2026-01-09 13:26:47] 2026-01-09 18:25:35,672 | INFO     | mean y: 2520929.476584022
[2026-01-09 13:26:47] 2026-01-09 18:25:35,672 | INFO     | intersect: 4746908929.89024
[2026-01-09 13:26:47] 2026-01-09 18:25:35,673 | INFO     | chi2: 0.7637801041670873
[2026-01-09 13:26:47] 2026-01-09 18:25:35,673 | INFO     | current chi2=0.7637801041670873 (change=11.158709289226445 %)
[2026-01-09 13:26:47] 2026-01-09 18:25:35,673 | INFO     | left removable region: 20
[2026-01-09 13:26:47] 2026-01-09 18:25:35,673 | INFO     | sum of square deviations: 12955806644.276686
[2026-01-09 13:26:47] 2026-01-09 18:25:35,716 | INFO     | sum of deviations: -10268706550.760828
[2026-01-09 13:26:47] 2026-01-09 18:25:35,716 | INFO     | mean x: 1767972112.1757925
[2026-01-09 13:26:47] 2026-01-09 18:25:35,716 | INFO     | mean y: 2524944.7665706053
[2026-01-09 13:26:47] 2026-01-09 18:25:35,716 | INFO     | intersect: 1403810662.3086748
[2026-01-09 13:26:47] 2026-01-09 18:25:35,717 | INFO     | chi2: 0.058506065914033185
[2026-01-09 13:26:47] 2026-01-09 18:25:35,717 | INFO     | current memory leak: -0.79 B/s (using 347 data points, chi2=0.06)
[2026-01-09 13:26:47] 2026-01-09 18:25:35,764 | INFO     | could have reported an average CPU frequency of 2808 MHz (16 samples)
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | ..............................
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | . Timing measurements:
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | . get job = 0 s
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | . initial setup = 7 s
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | . payload setup = 44 s
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | . stage-in = 0 s
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | . payload execution = 22784 s
[2026-01-09 13:26:47] 2026-01-09 18:25:35,773 | INFO     | . stage-out = 4 s
[2026-01-09 13:26:47] 2026-01-09 18:25:35,774 | INFO     | . log creation = 0 s
[2026-01-09 13:26:47] 2026-01-09 18:25:35,774 | INFO     | ..............................
[2026-01-09 13:26:47] 2026-01-09 18:25:36,375 | INFO     | time since job start (22960s) is within the limit (349056.0s)
[2026-01-09 13:26:47] 2026-01-09 18:25:36,923 | INFO     | 
[2026-01-09 13:26:47] 2026-01-09 18:25:36,923 | INFO     | job summary report
[2026-01-09 13:26:47] 2026-01-09 18:25:36,923 | INFO     | --------------------------------------------------
[2026-01-09 13:26:47] 2026-01-09 18:25:36,923 | INFO     | PanDA job id: 6963152576
[2026-01-09 13:26:47] 2026-01-09 18:25:36,923 | INFO     | task id: 47898826
[2026-01-09 13:26:47] 2026-01-09 18:25:36,924 | INFO     | errors: (none)
[2026-01-09 13:26:47] 2026-01-09 18:25:36,924 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:26:47] 2026-01-09 18:25:36,924 | INFO     | pilot state: finished 
[2026-01-09 13:26:47] 2026-01-09 18:25:36,924 | INFO     | transexitcode: 0
[2026-01-09 13:26:47] 2026-01-09 18:25:36,924 | INFO     | exeerrorcode: 0
[2026-01-09 13:26:47] 2026-01-09 18:25:36,924 | INFO     | exeerrordiag: 
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | exitcode: 0
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | exitmsg: OK
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | cpuconsumptiontime: 61467 s
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | nevents: 400
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | neventsw: 0
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | pid: 3044132
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | pgrp: 3044132
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | corecount: 8
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | event service: False
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | sizes: {0: 2283140, 1: 2283825, 2: 2283853, 3: 2283853, 4: 2284024, 15: 2284052, 26: 2284208, 37: 2284236, 40: 2284526, 48: 2284554, 22834: 2319176, 22841: 2328230
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | --------------------------------------------------
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | 
[2026-01-09 13:26:47] 2026-01-09 18:25:36,925 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 13:26:47] 2026-01-09 18:25:37,162 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,163 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | job 6963152576 has completed (purged errors)
[2026-01-09 13:26:47] 2026-01-09 18:25:37,164 | INFO     | overall cleanup function is called
[2026-01-09 13:26:47] 2026-01-09 18:25:38,182 | INFO     | --- collectZombieJob: --- 10, [3044132]
[2026-01-09 13:26:47] 2026-01-09 18:25:38,183 | INFO     | zombie collector waiting for pid 3044132
[2026-01-09 13:26:47] 2026-01-09 18:25:38,183 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:26:47] 2026-01-09 18:25:38,183 | INFO     | collected zombie processes
[2026-01-09 13:26:47] 2026-01-09 18:25:38,183 | INFO     | will attempt to kill all subprocesses of pid=3044132
[2026-01-09 13:26:47] 2026-01-09 18:25:43,614 | INFO     | PID=3002111 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:26:47] 2026-01-09 18:25:43,615 | INFO     | .. there are 76 such processes running
[2026-01-09 13:26:47] 2026-01-09 18:25:43,786 | INFO     | process IDs to be killed: [3044132] (in reverse order)
[2026-01-09 13:26:47] 2026-01-09 18:25:44,615 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:26:47] 2026-01-09 18:25:44,615 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:26:47] 2026-01-09 18:25:44,652 | INFO     | did not find any defunct processes belonging to 3044132
[2026-01-09 13:26:47] 2026-01-09 18:25:44,681 | INFO     | did not find any defunct processes belonging to 3044132
[2026-01-09 13:26:47] 2026-01-09 18:25:44,682 | INFO     | ready for new job
[2026-01-09 13:26:47] 2026-01-09 18:25:44,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:26:47] 2026-01-09 18:25:44,711 | INFO     | ***************************************
[2026-01-09 13:26:47] 2026-01-09 18:25:44,711 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:26:47] 2026-01-09 18:25:44,711 | INFO     | ***************************************
[2026-01-09 13:26:47] 2026-01-09 18:25:44,711 | INFO     | 
[2026-01-09 13:26:47] 2026-01-09 18:25:44,737 | INFO     | architecture information:
[2026-01-09 13:26:47] 2026-01-09 18:25:44,752 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:26:47] 2026-01-09 18:25:44,799 | INFO     | cat /etc/os-release:
[2026-01-09 13:26:47] NAME="CentOS Linux"
[2026-01-09 13:26:47] VERSION="7 (Core)"
[2026-01-09 13:26:47] ID="centos"
[2026-01-09 13:26:47] ID_LIKE="rhel fedora"
[2026-01-09 13:26:47] VERSION_ID="7"
[2026-01-09 13:26:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:26:47] ANSI_COLOR="0;31"
[2026-01-09 13:26:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:26:47] HOME_URL="https://www.centos.org/"
[2026-01-09 13:26:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:26:47] 
[2026-01-09 13:26:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:26:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:26:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:26:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:26:47] 
[2026-01-09 13:26:47] 2026-01-09 18:25:44,800 | INFO     | ***************************************
[2026-01-09 13:26:47] 2026-01-09 18:25:45,303 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 13:26:47] 2026-01-09 18:25:45,403 | INFO     | sufficient remaining disk space (93637836800 B)
[2026-01-09 13:26:47] 2026-01-09 18:25:45,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:26:47] 2026-01-09 18:25:45,404 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:26:47] 2026-01-09 18:25:45,404 | INFO     | update_server=False
[2026-01-09 13:26:47] 2026-01-09 18:25:45,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:26:47] 2026-01-09 18:25:45,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:26:47] 2026-01-09 18:25:45,407 | INFO     | aborting loop
[2026-01-09 13:26:47] 2026-01-09 18:25:45,936 | INFO     | all payload control threads have been joined
[2026-01-09 13:26:47] 2026-01-09 18:25:46,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:26:47] 2026-01-09 18:25:46,146 | INFO     | all data control threads have been joined
[2026-01-09 13:26:47] 2026-01-09 18:25:46,409 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:46,413 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:46,514 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:46,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:26:47] 2026-01-09 18:25:46,921 | INFO     | all job control threads have been joined
[2026-01-09 13:26:47] 2026-01-09 18:25:46,942 | INFO     | [payload] control thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:46,971 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,018 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,035 | INFO     | [job] validate thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,038 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,157 | INFO     | [data] control thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,240 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,294 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,497 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,590 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:47,932 | INFO     | [job] control thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:48,022 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:26:47] 2026-01-09 18:25:48,563 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:25:52,060 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:26:47] 2026-01-09 18:26:17,548 | INFO     | PID=3002111 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:26:47] 2026-01-09 18:26:17,549 | INFO     | .. there are 76 such processes running
[2026-01-09 13:26:47] 2026-01-09 18:26:17,550 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:26:47] 2026-01-09 18:26:17,550 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:26:47] 2026-01-09 18:26:17,550 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:26:47] 2026-01-09 18:26:38,389 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:26:47] 2026-01-09 18:26:39,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139699018991424)>', '<ExcThread(monitor, started 139698659890944)>']
[2026-01-09 13:26:47] 2026-01-09 18:26:39,770 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:26:47] 2026-01-09 18:26:39,770 | INFO     | [monitor] control thread has ended
[2026-01-09 13:26:47] 2026-01-09 18:26:44,645 | INFO     | all workflow threads have been joined
[2026-01-09 13:26:47] 2026-01-09 18:26:44,645 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:26:47] 2026-01-09 18:26:44,645 | INFO     | traces error code: 0
[2026-01-09 13:26:47] 2026-01-09 18:26:44,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:26:47] 2026-01-09 18:26:46,749 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:26:47] 2026-01-09 18:26:46,782 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:26:47] 2026-01-09 18:26:46,785 [wrapper] pilotpid: 3002111
[2026-01-09 13:26:47] 2026-01-09 18:26:46,787 [wrapper] Pilot exit status: 0
[2026-01-09 13:26:47] 2026-01-09 18:26:46,965 [wrapper] pandaids: 6963152576
[2026-01-09 13:26:47] 2026-01-09 18:26:47,331 [wrapper] cleanup supervisor_pilot 3058388 3002112
[2026-01-09 13:26:47] 2026-01-09 18:26:47,380 [wrapper] Test setup, not cleaning
[2026-01-09 13:26:47] 2026-01-09 18:26:47,397 [wrapper] apfmon messages muted
[2026-01-09 13:26:47] 2026-01-09 18:26:47,407 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:26:47] 2026-01-09 18:26:47,424 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:26:47]  *** Error codes and diagnostics ***
[2026-01-09 13:26:47]     "exeErrorCode": 0,
[2026-01-09 13:26:47]     "exeErrorDiag": "",
[2026-01-09 13:26:47]     "pilotErrorCode": 0,
[2026-01-09 13:26:47]     "pilotErrorDiag": "",
[2026-01-09 13:26:47]  *** Listing of results directory ***
[2026-01-09 13:26:48] total 440784
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 13:26:48] -rwx------. 1 boincer umatlas     36322 Jan  8 11:06 runpilot2-wrapper.sh
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas       100 Jan  9 07:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:26:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 07:01 run_atlas
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas       105 Jan  9 07:01 job.xml
[2026-01-09 13:26:48] -rw-r--r--. 2 boincer umatlas 223258574 Jan  9 07:01 EVNT.47898824._000874.pool.root.1
[2026-01-09 13:26:48] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:01 start_atlas.sh
[2026-01-09 13:26:48] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 07:01 shared
[2026-01-09 13:26:48] -rw-r--r--. 2 boincer umatlas    592395 Jan  9 07:01 input.tar.gz
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas         0 Jan  9 07:01 boinc_lockfile
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas      2518 Jan  9 07:01 pandaJob.out
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas        57 Jan  9 07:01 setup.sh.local
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas    989377 Jan  9 07:02 agis_schedconf.cvmfs.json
[2026-01-09 13:26:48] drwx------. 5 boincer umatlas      4096 Jan  9 07:02 pilot3
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas      6863 Jan  9 13:20 init_data.xml
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas 217873815 Jan  9 13:23 HITS.47898826._029334.pool.root.1
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas       531 Jan  9 13:23 boinc_task_state.xml
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas      1048 Jan  9 13:24 memory_monitor_summary.json
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas   1516240 Jan  9 13:24 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas    548521 Jan  9 13:24 log.47898826._029334.job.log.tgz.1
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas      7829 Jan  9 13:25 heartbeat.json
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas        95 Jan  9 13:26 pilot_heartbeat.json
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas      4824 Jan  9 13:26 pilotlog.txt
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 13:26 boinc_mmap_file
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas   2609420 Jan  9 13:26 log.47898826._029334.job.log.1
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas        28 Jan  9 13:26 wrapper_checkpoint.txt
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas       357 Jan  9 13:26 output.list
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas       620 Jan  9 13:26 runtime_log
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas   3174400 Jan  9 13:26 result.tar.gz
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas       658 Jan  9 13:26 uzgNDmCi7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm84kKDm6JJ6Qo.diag
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 13:26 runtime_log.err
[2026-01-09 13:26:48] -rw-r--r--. 1 boincer umatlas     21530 Jan  9 13:26 stderr.txt
[2026-01-09 13:26:48] HITS file was successfully produced:
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas 217873815 Jan  9 13:23 shared/HITS.pool.root.1
[2026-01-09 13:26:48]  *** Contents of shared directory: ***
[2026-01-09 13:26:48] total 434500
[2026-01-09 13:26:48] -rw-r--r--. 2 boincer umatlas 223258574 Jan  9 07:01 ATLAS.root_0
[2026-01-09 13:26:48] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 07:01 start_atlas.sh
[2026-01-09 13:26:48] -rw-r--r--. 2 boincer umatlas    592395 Jan  9 07:01 input.tar.gz
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas 217873815 Jan  9 13:23 HITS.pool.root.1
[2026-01-09 13:26:48] -rw-------. 1 boincer umatlas   3174400 Jan  9 13:26 result.tar.gz
13:26:49 (2983263): run_atlas exited; CPU time 63053.144389
13:26:49 (2983263): called boinc_finish(0)

</stderr_txt>
]]>

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