Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:09:35 (740326): wrapper (7.7.26015): starting
00:09:35 (740326): wrapper: running run_atlas (--nthreads 11)
[2026-01-09 00:09:35] Arguments: --nthreads 11
[2026-01-09 00:09:35] Threads: 11
[2026-01-09 00:09:35] Checking for CVMFS
[2026-01-09 00:09:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:09:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:09:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:09:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:09:38] 2.13.3.0 5695 23370 184976 154931 1 337 28435899 40960001 10233 16776704 0 17819271 99.701 16357533 47260 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:09:38] CVMFS is ok
[2026-01-09 00:09:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:09:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:09:38] Further information can be found at the LHC@home message board.
[2026-01-09 00:09:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:09:38] Checking for apptainer binary...
[2026-01-09 00:09:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:09:38] Running /usr/bin/apptainer --version
[2026-01-09 00:09:38] apptainer version 1.4.5-2.el9
[2026-01-09 00:09:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:09:39] c-210-37-4.aglt2.org
[2026-01-09 00:09:39] apptainer works
[2026-01-09 00:09:39] Set ATHENA_PROC_NUMBER=11
[2026-01-09 00:09:39] Set ATHENA_CORE_NUMBER=11
[2026-01-09 00:09:39] Starting ATLAS job with PandaID=6963148831
[2026-01-09 00:09:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:31:33]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:31:33] 2026-01-09 18:30:44,987 | INFO     | right removable region: 778
[2026-01-09 13:31:33] 2026-01-09 18:30:44,988 | INFO     | sum of square deviations: 146573672179.28372
[2026-01-09 13:31:33] 2026-01-09 18:30:44,999 | INFO     | sum of deviations: 639826839642.3375
[2026-01-09 13:31:33] 2026-01-09 18:30:44,999 | INFO     | mean x: 1767959641.1116817
[2026-01-09 13:31:33] 2026-01-09 18:30:45,000 | INFO     | mean y: 2615821.490372272
[2026-01-09 13:31:33] 2026-01-09 18:30:45,000 | INFO     | intersect: -7714923167.394749
[2026-01-09 13:31:33] 2026-01-09 18:30:45,001 | INFO     | chi2: 2.121095882462127
[2026-01-09 13:31:33] 2026-01-09 18:30:45,001 | INFO     | current chi2=2.121095882462127 (change=61.416424631671184 %)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,061 | INFO     | sum of square deviations: 143769013169.03513
[2026-01-09 13:31:33] 2026-01-09 18:30:45,139 | INFO     | sum of deviations: 477873889777.6511
[2026-01-09 13:31:33] 2026-01-09 18:30:45,140 | INFO     | mean x: 1767959793.6162791
[2026-01-09 13:31:33] 2026-01-09 18:30:45,140 | INFO     | mean y: 2624623.281653747
[2026-01-09 13:31:33] 2026-01-09 18:30:45,140 | INFO     | intersect: -5873897757.466456
[2026-01-09 13:31:33] 2026-01-09 18:30:45,166 | INFO     | chi2: 0.7867249720509388
[2026-01-09 13:31:33] 2026-01-09 18:30:45,166 | INFO     | current chi2=0.7867249720509388 (change=62.90950453697908 %)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,167 | INFO     | sum of square deviations: 141000496233.46704
[2026-01-09 13:31:33] 2026-01-09 18:30:45,210 | INFO     | time since job start (47990s) is within the limit (349056.0s)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,291 | INFO     | sum of deviations: 394187271737.9221
[2026-01-09 13:31:33] 2026-01-09 18:30:45,292 | INFO     | mean x: 1767959946.1170352
[2026-01-09 13:31:33] 2026-01-09 18:30:45,292 | INFO     | mean y: 2629230.33420026
[2026-01-09 13:31:33] 2026-01-09 18:30:45,292 | INFO     | intersect: -4939958393.95236
[2026-01-09 13:31:33] 2026-01-09 18:30:45,293 | INFO     | chi2: 0.454773670363697
[2026-01-09 13:31:33] 2026-01-09 18:30:45,293 | INFO     | current chi2=0.454773670363697 (change=42.19407206839605 %)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,324 | INFO     | sum of square deviations: 138267607047.67926
[2026-01-09 13:31:33] 2026-01-09 18:30:45,468 | INFO     | sum of deviations: 332751335671.01843
[2026-01-09 13:31:33] 2026-01-09 18:30:45,500 | INFO     | mean x: 1767960098.6217277
[2026-01-09 13:31:33] 2026-01-09 18:30:45,500 | INFO     | mean y: 2632657.107329843
[2026-01-09 13:31:33] 2026-01-09 18:30:45,501 | INFO     | intersect: -4252095523.923409
[2026-01-09 13:31:33] 2026-01-09 18:30:45,502 | INFO     | chi2: 0.2849529349143361
[2026-01-09 13:31:33] 2026-01-09 18:30:45,502 | INFO     | current chi2=0.2849529349143361 (change=37.34181341535226 %)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,503 | INFO     | sum of square deviations: 135570346744.35837
[2026-01-09 13:31:33] 2026-01-09 18:30:45,613 | INFO     | sum of deviations: 286070222189.8156
[2026-01-09 13:31:33] 2026-01-09 18:30:45,613 | INFO     | mean x: 1767960251.1238472
[2026-01-09 13:31:33] 2026-01-09 18:30:45,613 | INFO     | mean y: 2635295.789196311
[2026-01-09 13:31:33] 2026-01-09 18:30:45,613 | INFO     | intersect: -3727979798.199327
[2026-01-09 13:31:33] 2026-01-09 18:30:45,614 | INFO     | chi2: 0.19143768557804652
[2026-01-09 13:31:33] 2026-01-09 18:30:45,614 | INFO     | current chi2=0.19143768557804652 (change=32.81778773901822 %)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,640 | INFO     | sum of square deviations: 132908296340.02121
[2026-01-09 13:31:33] 2026-01-09 18:30:45,696 | INFO     | sum of deviations: 257278730229.93362
[2026-01-09 13:31:33] 2026-01-09 18:30:45,717 | INFO     | mean x: 1767960403.6286473
[2026-01-09 13:31:33] 2026-01-09 18:30:45,717 | INFO     | mean y: 2636943.6604774534
[2026-01-09 13:31:33] 2026-01-09 18:30:45,718 | INFO     | intersect: -3419712302.1586695
[2026-01-09 13:31:33] 2026-01-09 18:30:45,718 | INFO     | chi2: 0.15703348201451064
[2026-01-09 13:31:33] 2026-01-09 18:30:45,719 | INFO     | current chi2=0.15703348201451064 (change=17.971489500435773 %)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,719 | INFO     | left removable region: 60
[2026-01-09 13:31:33] 2026-01-09 18:30:45,720 | INFO     | sum of square deviations: 114764505853.96684
[2026-01-09 13:31:33] 2026-01-09 18:30:45,792 | INFO     | sum of deviations: 206799528400.27557
[2026-01-09 13:31:33] 2026-01-09 18:30:45,796 | INFO     | mean x: 1767961135.626741
[2026-01-09 13:31:33] 2026-01-09 18:30:45,796 | INFO     | mean y: 2638995.5793871866
[2026-01-09 13:31:33] 2026-01-09 18:30:45,797 | INFO     | intersect: -3183132827.8348484
[2026-01-09 13:31:33] 2026-01-09 18:30:45,797 | INFO     | chi2: 0.028642114987422324
[2026-01-09 13:31:33] 2026-01-09 18:30:45,798 | INFO     | current memory leak: 1.80 B/s (using 718 data points, chi2=0.03)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,799 | INFO     | could have reported an average CPU frequency of 3021 MHz (29 samples)
[2026-01-09 13:31:33] 2026-01-09 18:30:45,799 | INFO     | ..............................
[2026-01-09 13:31:33] 2026-01-09 18:30:45,799 | INFO     | . Timing measurements:
[2026-01-09 13:31:33] 2026-01-09 18:30:45,799 | INFO     | . get job = 0 s
[2026-01-09 13:31:33] 2026-01-09 18:30:45,799 | INFO     | . initial setup = 8 s
[2026-01-09 13:31:33] 2026-01-09 18:30:45,799 | INFO     | . payload setup = 43 s
[2026-01-09 13:31:33] 2026-01-09 18:30:45,799 | INFO     | . stage-in = 1 s
[2026-01-09 13:31:33] 2026-01-09 18:30:45,800 | INFO     | . payload execution = 47845 s
[2026-01-09 13:31:33] 2026-01-09 18:30:45,800 | INFO     | . stage-out = 4 s
[2026-01-09 13:31:33] 2026-01-09 18:30:45,820 | INFO     | . log creation = 0 s
[2026-01-09 13:31:33] 2026-01-09 18:30:45,820 | INFO     | ..............................
[2026-01-09 13:31:33] 2026-01-09 18:30:46,218 | INFO     | 
[2026-01-09 13:31:33] 2026-01-09 18:30:46,219 | INFO     | job summary report
[2026-01-09 13:31:33] 2026-01-09 18:30:46,219 | INFO     | --------------------------------------------------
[2026-01-09 13:31:33] 2026-01-09 18:30:46,219 | INFO     | PanDA job id: 6963148831
[2026-01-09 13:31:33] 2026-01-09 18:30:46,219 | INFO     | task id: 47898826
[2026-01-09 13:31:33] 2026-01-09 18:30:46,220 | INFO     | errors: (none)
[2026-01-09 13:31:33] 2026-01-09 18:30:46,220 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:31:33] 2026-01-09 18:30:46,220 | INFO     | pilot state: finished 
[2026-01-09 13:31:33] 2026-01-09 18:30:46,220 | INFO     | transexitcode: 0
[2026-01-09 13:31:33] 2026-01-09 18:30:46,220 | INFO     | exeerrorcode: 0
[2026-01-09 13:31:33] 2026-01-09 18:30:46,220 | INFO     | exeerrordiag: 
[2026-01-09 13:31:33] 2026-01-09 18:30:46,229 | INFO     | exitcode: 0
[2026-01-09 13:31:33] 2026-01-09 18:30:46,229 | INFO     | exitmsg: OK
[2026-01-09 13:31:33] 2026-01-09 18:30:46,229 | INFO     | cpuconsumptiontime: 54930 s
[2026-01-09 13:31:33] 2026-01-09 18:30:46,229 | INFO     | nevents: 400
[2026-01-09 13:31:33] 2026-01-09 18:30:46,229 | INFO     | neventsw: 0
[2026-01-09 13:31:33] 2026-01-09 18:30:46,229 | INFO     | pid: 765868
[2026-01-09 13:31:33] 2026-01-09 18:30:46,230 | INFO     | pgrp: 765868
[2026-01-09 13:31:33] 2026-01-09 18:30:46,230 | INFO     | corecount: 11
[2026-01-09 13:31:33] 2026-01-09 18:30:46,230 | INFO     | event service: False
[2026-01-09 13:31:33] 2026-01-09 18:30:46,230 | INFO     | sizes: {0: 2283143, 1: 2283828, 2: 2284027, 13: 2284027, 24: 2284083, 35: 2284111, 41: 2284529, 46: 2284557, 47890: 2330154, 47891: 2330153, 47895: 2339207, 47898:
[2026-01-09 13:31:33] 2026-01-09 18:30:46,230 | INFO     | --------------------------------------------------
[2026-01-09 13:31:33] 2026-01-09 18:30:46,230 | INFO     | 
[2026-01-09 13:31:33] 2026-01-09 18:30:46,230 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 13:31:33] 2026-01-09 18:30:46,388 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,389 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,390 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,390 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,390 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:31:33] 2026-01-09 18:30:46,390 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,390 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:31:33] 2026-01-09 18:30:46,390 | INFO     | job 6963148831 has completed (purged errors)
[2026-01-09 13:31:33] 2026-01-09 18:30:46,390 | INFO     | overall cleanup function is called
[2026-01-09 13:31:33] 2026-01-09 18:30:46,825 | INFO     | PID=748635 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 13:31:33] 2026-01-09 18:30:46,825 | INFO     | .. there are 9 such processes running
[2026-01-09 13:31:33] 2026-01-09 18:30:47,424 | INFO     | --- collectZombieJob: --- 10, [765868]
[2026-01-09 13:31:33] 2026-01-09 18:30:47,424 | INFO     | zombie collector waiting for pid 765868
[2026-01-09 13:31:33] 2026-01-09 18:30:47,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:31:33] 2026-01-09 18:30:47,424 | INFO     | collected zombie processes
[2026-01-09 13:31:33] 2026-01-09 18:30:47,425 | INFO     | will attempt to kill all subprocesses of pid=765868
[2026-01-09 13:31:33] 2026-01-09 18:30:48,472 | INFO     | process IDs to be killed: [765868] (in reverse order)
[2026-01-09 13:31:33] 2026-01-09 18:30:48,555 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:31:33] 2026-01-09 18:30:48,555 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:31:33] 2026-01-09 18:30:48,573 | INFO     | did not find any defunct processes belonging to 765868
[2026-01-09 13:31:33] 2026-01-09 18:30:48,581 | INFO     | did not find any defunct processes belonging to 765868
[2026-01-09 13:31:33] 2026-01-09 18:30:48,582 | INFO     | ready for new job
[2026-01-09 13:31:33] 2026-01-09 18:30:48,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:31:33] 2026-01-09 18:30:48,609 | INFO     | ***************************************
[2026-01-09 13:31:33] 2026-01-09 18:30:48,609 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:31:33] 2026-01-09 18:30:48,609 | INFO     | ***************************************
[2026-01-09 13:31:33] 2026-01-09 18:30:48,609 | INFO     | 
[2026-01-09 13:31:33] 2026-01-09 18:30:48,617 | INFO     | architecture information:
[2026-01-09 13:31:33] 2026-01-09 18:30:48,627 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:31:33] 2026-01-09 18:30:48,745 | INFO     | cat /etc/os-release:
[2026-01-09 13:31:33] NAME="CentOS Linux"
[2026-01-09 13:31:33] VERSION="7 (Core)"
[2026-01-09 13:31:33] ID="centos"
[2026-01-09 13:31:33] ID_LIKE="rhel fedora"
[2026-01-09 13:31:33] VERSION_ID="7"
[2026-01-09 13:31:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:31:33] ANSI_COLOR="0;31"
[2026-01-09 13:31:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:31:33] HOME_URL="https://www.centos.org/"
[2026-01-09 13:31:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:31:33] 
[2026-01-09 13:31:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:31:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:31:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:31:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:31:33] 
[2026-01-09 13:31:33] 2026-01-09 18:30:48,746 | INFO     | ***************************************
[2026-01-09 13:31:33] 2026-01-09 18:30:49,249 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 13:31:33] 2026-01-09 18:30:49,446 | INFO     | sufficient remaining disk space (74237083648 B)
[2026-01-09 13:31:33] 2026-01-09 18:30:49,447 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:31:33] 2026-01-09 18:30:49,447 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:31:33] 2026-01-09 18:30:49,447 | INFO     | update_server=False
[2026-01-09 13:31:33] 2026-01-09 18:30:49,447 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:31:33] 2026-01-09 18:30:49,448 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:31:33] 2026-01-09 18:30:49,450 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:31:33] 2026-01-09 18:30:49,450 | INFO     | aborting loop
[2026-01-09 13:31:33] 2026-01-09 18:30:49,879 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:31:33] 2026-01-09 18:30:49,913 | INFO     | all data control threads have been joined
[2026-01-09 13:31:33] 2026-01-09 18:30:50,453 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:50,459 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:50,603 | INFO     | all payload control threads have been joined
[2026-01-09 13:31:33] 2026-01-09 18:30:50,616 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:50,806 | INFO     | all job control threads have been joined
[2026-01-09 13:31:33] 2026-01-09 18:30:50,890 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:50,910 | INFO     | [job] validate thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:50,918 | INFO     | [data] control thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,237 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:31:33] 2026-01-09 18:30:51,283 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,332 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,609 | INFO     | [payload] control thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,743 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,749 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,812 | INFO     | [job] control thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,887 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:51,896 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:52,243 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:30:53,457 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:31:33] 2026-01-09 18:31:19,263 | INFO     | PID=748635 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 13:31:33] 2026-01-09 18:31:19,263 | INFO     | .. there are 9 such processes running
[2026-01-09 13:31:33] 2026-01-09 18:31:19,264 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:31:33] 2026-01-09 18:31:19,264 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:31:33] 2026-01-09 18:31:19,264 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:31:33] 2026-01-09 18:31:26,683 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:31:33] 2026-01-09 18:31:28,261 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140590569477952)>', '<ExcThread(monitor, started 140590201149184)>']
[2026-01-09 13:31:33] 2026-01-09 18:31:28,317 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:31:33] 2026-01-09 18:31:28,317 | INFO     | [monitor] control thread has ended
[2026-01-09 13:31:33] 2026-01-09 18:31:33,287 | INFO     | all workflow threads have been joined
[2026-01-09 13:31:33] 2026-01-09 18:31:33,287 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:31:33] 2026-01-09 18:31:33,288 | INFO     | traces error code: 0
[2026-01-09 13:31:33] 2026-01-09 18:31:33,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:31:33] 2026-01-09 18:31:33,479 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:31:33] 2026-01-09 18:31:33,482 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:31:33] 2026-01-09 18:31:33,484 [wrapper] pilotpid: 748635
[2026-01-09 13:31:33] 2026-01-09 18:31:33,486 [wrapper] Pilot exit status: 0
[2026-01-09 13:31:33] 2026-01-09 18:31:33,505 [wrapper] pandaids: 6963148831
[2026-01-09 13:31:33] 2026-01-09 18:31:33,572 [wrapper] cleanup supervisor_pilot 2130417 748636
[2026-01-09 13:31:33] 2026-01-09 18:31:33,575 [wrapper] Test setup, not cleaning
[2026-01-09 13:31:33] 2026-01-09 18:31:33,629 [wrapper] apfmon messages muted
[2026-01-09 13:31:33] 2026-01-09 18:31:33,680 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:31:33] 2026-01-09 18:31:33,707 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:31:33]  *** Error codes and diagnostics ***
[2026-01-09 13:31:33]     "exeErrorCode": 0,
[2026-01-09 13:31:33]     "exeErrorDiag": "",
[2026-01-09 13:31:33]     "pilotErrorCode": 0,
[2026-01-09 13:31:33]     "pilotErrorDiag": "",
[2026-01-09 13:31:33]  *** Listing of results directory ***
[2026-01-09 13:31:33] total 453500
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 13:31:33] -rwx------. 1 boincer umatlas     36322 Jan  8 11:05 runpilot2-wrapper.sh
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:07 queuedata.json
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:31:33] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:09 run_atlas
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:09 job.xml
[2026-01-09 13:31:33] -rw-r--r--. 2 boincer umatlas 225296660 Jan  9 00:09 EVNT.47898824._001112.pool.root.1
[2026-01-09 13:31:33] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:09 start_atlas.sh
[2026-01-09 13:31:33] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:09 shared
[2026-01-09 13:31:33] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 00:09 input.tar.gz
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:09 boinc_lockfile
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 00:09 pandaJob.out
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas        57 Jan  9 00:09 setup.sh.local
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas    989771 Jan  9 00:10 agis_schedconf.cvmfs.json
[2026-01-09 13:31:33] drwx------. 5 boincer umatlas      4096 Jan  9 00:10 pilot3
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas 221714597 Jan  9 13:29 HITS.47898826._028179.pool.root.1
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas       530 Jan  9 13:29 boinc_task_state.xml
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas      1040 Jan  9 13:30 memory_monitor_summary.json
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas   1516240 Jan  9 13:30 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas    916037 Jan  9 13:30 log.47898826._028179.job.log.tgz.1
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas        95 Jan  9 13:30 pilot_heartbeat.json
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas      7823 Jan  9 13:30 heartbeat.json
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas      6841 Jan  9 13:30 init_data.xml
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas        27 Jan  9 13:31 wrapper_checkpoint.txt
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 13:31 boinc_mmap_file
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas      4822 Jan  9 13:31 pilotlog.txt
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas   5810207 Jan  9 13:31 log.47898826._028179.job.log.1
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas       357 Jan  9 13:31 output.list
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas       620 Jan  9 13:31 runtime_log
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas   6748160 Jan  9 13:31 result.tar.gz
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas       660 Jan  9 13:31 SBiKDmEh7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm21kKDmebtwlm.diag
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas      9355 Jan  9 13:31 runtime_log.err
[2026-01-09 13:31:33] -rw-r--r--. 1 boincer umatlas     21222 Jan  9 13:31 stderr.txt
[2026-01-09 13:31:33] HITS file was successfully produced:
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas 221714597 Jan  9 13:29 shared/HITS.pool.root.1
[2026-01-09 13:31:33]  *** Contents of shared directory: ***
[2026-01-09 13:31:33] total 443732
[2026-01-09 13:31:33] -rw-r--r--. 2 boincer umatlas 225296660 Jan  9 00:09 ATLAS.root_0
[2026-01-09 13:31:33] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:09 start_atlas.sh
[2026-01-09 13:31:33] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 00:09 input.tar.gz
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas 221714597 Jan  9 13:29 HITS.pool.root.1
[2026-01-09 13:31:33] -rw-------. 1 boincer umatlas   6748160 Jan  9 13:31 result.tar.gz
13:31:35 (740326): run_atlas exited; CPU time 56083.027956
13:31:35 (740326): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN