Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:51:54 (9049): wrapper (7.7.26015): starting
08:51:54 (9049): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 08:51:54] Arguments: --nthreads 8
[2026-01-09 08:51:54] Threads: 8
[2026-01-09 08:51:54] Checking for CVMFS
[2026-01-09 08:51:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 08:51:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 08:51:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 08:51:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 08:51:54] 2.11.2.0 1035 35139 92156 154936 3 57 17119651 25165824 0 130560 0 14285171 99.813 10058753 4253 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 08:51:54] CVMFS is ok
[2026-01-09 08:51:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 08:51:54] Checking for apptainer binary...
[2026-01-09 08:51:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 08:51:54] Running /usr/bin/apptainer --version
[2026-01-09 08:51:54] apptainer version 1.3.2-1.el7
[2026-01-09 08:51:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 08:51:56] cg-vwn358.simple-grid.lan
[2026-01-09 08:51:56] apptainer works
[2026-01-09 08:51:56] Set ATHENA_PROC_NUMBER=8
[2026-01-09 08:51:56] Set ATHENA_CORE_NUMBER=8
[2026-01-09 08:51:56] Starting ATLAS job with PandaID=6963151459
[2026-01-09 08:51:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:41:32]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:41:32] 2026-01-09 10:40:23,394 | WARNING  | process 19213 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 11:41:32] 2026-01-09 10:40:23,395 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6963151459/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:41:32] 2026-01-09 10:40:23,453 | INFO     | number of running child processes to parent process 19213: 1
[2026-01-09 11:41:32] 2026-01-09 10:40:23,453 | INFO     | maximum number of monitored processes: 6
[2026-01-09 11:41:32] 2026-01-09 10:40:24,297 | INFO     | time since job start (10094s) is within the limit (349056.0s)
[2026-01-09 11:41:32] 2026-01-09 10:40:25,956 | INFO     | monitor loop #690: job 0:6963151459 is in state 'finished'
[2026-01-09 11:41:32] 2026-01-09 10:40:25,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:41:32] 2026-01-09 10:40:26,303 | INFO     | time since job start (10096s) is within the limit (349056.0s)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,176 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 11:41:32] 2026-01-09 10:40:27,177 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 11:41:32] 2026-01-09 10:40:27,179 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6963151459/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,180 | INFO     | extracted standard info from prmon json
[2026-01-09 11:41:32] 2026-01-09 10:40:27,180 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:41:32] 2026-01-09 10:40:27,180 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:41:32] 2026-01-09 10:40:27,181 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 11:41:32] 2026-01-09 10:40:27,181 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 11:41:32] 2026-01-09 10:40:27,185 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:41:32] 2026-01-09 10:40:27,185 | INFO     | sum of square deviations: 1392881930.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,186 | INFO     | sum of deviations: 12827092017.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,186 | INFO     | mean x: 1767950161.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,187 | INFO     | mean y: 2499603.0545454547
[2026-01-09 11:41:32] 2026-01-09 10:40:27,187 | INFO     | intersect: -16278607149.918383
[2026-01-09 11:41:32] 2026-01-09 10:40:27,187 | INFO     | chi2: 1.5500140641963256
[2026-01-09 11:41:32] 2026-01-09 10:40:27,188 | INFO     | sum of square deviations: 1270051720.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,189 | INFO     | sum of deviations: 12416481070.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,189 | INFO     | mean x: 1767950008.5
[2026-01-09 11:41:32] 2026-01-09 10:40:27,189 | INFO     | mean y: 2499093.1125
[2026-01-09 11:41:32] 2026-01-09 10:40:27,190 | INFO     | intersect: -17281614197.365616
[2026-01-09 11:41:32] 2026-01-09 10:40:27,190 | INFO     | chi2: 1.5514573822467996
[2026-01-09 11:41:32] 2026-01-09 10:40:27,190 | INFO     | current chi2=1.5514573822467996 (change=-0.09311644867057342 %)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,190 | INFO     | right removable region: 159
[2026-01-09 11:41:32] 2026-01-09 10:40:27,190 | INFO     | sum of square deviations: 1270051720.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,192 | INFO     | sum of deviations: -11644815636.999998
[2026-01-09 11:41:32] 2026-01-09 10:40:27,192 | INFO     | mean x: 1767950313.5
[2026-01-09 11:41:32] 2026-01-09 10:40:27,192 | INFO     | mean y: 2529550.85
[2026-01-09 11:41:32] 2026-01-09 10:40:27,192 | INFO     | intersect: 16212464258.14196
[2026-01-09 11:41:32] 2026-01-09 10:40:27,192 | INFO     | chi2: 0.11077996339270231
[2026-01-09 11:41:32] 2026-01-09 10:40:27,192 | INFO     | current chi2=0.11077996339270231 (change=92.85297043739142 %)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,193 | INFO     | sum of square deviations: 1154663510.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,194 | INFO     | sum of deviations: -11803996113.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,194 | INFO     | mean x: 1767950466.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,194 | INFO     | mean y: 2529694.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,194 | INFO     | intersect: 18076089867.942398
[2026-01-09 11:41:32] 2026-01-09 10:40:27,194 | INFO     | chi2: 0.09480145166762564
[2026-01-09 11:41:32] 2026-01-09 10:40:27,194 | INFO     | current chi2=0.09480145166762564 (change=14.423647775035517 %)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,195 | INFO     | left removable region: 20
[2026-01-09 11:41:32] 2026-01-09 10:40:27,195 | INFO     | sum of square deviations: 832722590.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,196 | INFO     | sum of deviations: -1521688493.000001
[2026-01-09 11:41:32] 2026-01-09 10:40:27,196 | INFO     | mean x: 1767950588.0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,196 | INFO     | mean y: 2514542.633093525
[2026-01-09 11:41:32] 2026-01-09 10:40:27,196 | INFO     | intersect: 3233206369.970437
[2026-01-09 11:41:32] 2026-01-09 10:40:27,196 | INFO     | chi2: 0.03569557404345224
[2026-01-09 11:41:32] 2026-01-09 10:40:27,197 | INFO     | current memory leak: -1.83 B/s (using 139 data points, chi2=0.04)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,197 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,197 | INFO     | ..............................
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . Timing measurements:
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . get job = 0 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . initial setup = 1 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . payload setup = 6 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . stage-in = 0 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . payload execution = 10062 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . stage-out = 1 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | . log creation = 0 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,198 | INFO     | ..............................
[2026-01-09 11:41:32] 2026-01-09 10:40:27,333 | INFO     | 
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | job summary report
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | --------------------------------------------------
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | PanDA job id: 6963151459
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | task id: 47898826
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | errors: (none)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | pilot state: finished 
[2026-01-09 11:41:32] 2026-01-09 10:40:27,334 | INFO     | transexitcode: 0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | exeerrorcode: 0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | exeerrordiag: 
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | exitcode: 0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | exitmsg: OK
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | cpuconsumptiontime: 75676 s
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | nevents: 400
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | neventsw: 0
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | pid: 19213
[2026-01-09 11:41:32] 2026-01-09 10:40:27,335 | INFO     | pgrp: 19213
[2026-01-09 11:41:32] 2026-01-09 10:40:27,336 | INFO     | corecount: 8
[2026-01-09 11:41:32] 2026-01-09 10:40:27,336 | INFO     | event service: False
[2026-01-09 11:41:32] 2026-01-09 10:40:27,336 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 10072: 2312688, 10075: 2321686, 10076: 2321742, 10081: 2322128}
[2026-01-09 11:41:32] 2026-01-09 10:40:27,336 | INFO     | --------------------------------------------------
[2026-01-09 11:41:32] 2026-01-09 10:40:27,336 | INFO     | 
[2026-01-09 11:41:32] 2026-01-09 10:40:27,336 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-01-09 11:41:32] 2026-01-09 10:40:27,358 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,358 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,358 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,359 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,360 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,361 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:41:32] 2026-01-09 10:40:27,361 | INFO     | job 6963151459 has completed (purged errors)
[2026-01-09 11:41:32] 2026-01-09 10:40:27,361 | INFO     | overall cleanup function is called
[2026-01-09 11:41:32] 2026-01-09 10:40:28,369 | INFO     | --- collectZombieJob: --- 10, [19213]
[2026-01-09 11:41:32] 2026-01-09 10:40:28,370 | INFO     | zombie collector waiting for pid 19213
[2026-01-09 11:41:32] 2026-01-09 10:40:28,370 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:41:32] 2026-01-09 10:40:28,370 | INFO     | collected zombie processes
[2026-01-09 11:41:32] 2026-01-09 10:40:28,370 | INFO     | will attempt to kill all subprocesses of pid=19213
[2026-01-09 11:41:32] 2026-01-09 10:40:28,431 | INFO     | process IDs to be killed: [19213] (in reverse order)
[2026-01-09 11:41:32] 2026-01-09 10:40:28,476 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:41:32] 2026-01-09 10:40:28,477 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:41:32] 2026-01-09 10:40:28,479 | INFO     | did not find any defunct processes belonging to 19213
[2026-01-09 11:41:32] 2026-01-09 10:40:28,480 | INFO     | did not find any defunct processes belonging to 19213
[2026-01-09 11:41:32] 2026-01-09 10:40:28,481 | INFO     | ready for new job
[2026-01-09 11:41:32] 2026-01-09 10:40:28,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:41:32] 2026-01-09 10:40:28,483 | INFO     | ***************************************
[2026-01-09 11:41:32] 2026-01-09 10:40:28,483 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:41:32] 2026-01-09 10:40:28,483 | INFO     | ***************************************
[2026-01-09 11:41:32] 2026-01-09 10:40:28,483 | INFO     | 
[2026-01-09 11:41:32] 2026-01-09 10:40:28,484 | INFO     | pilot is running in a VM
[2026-01-09 11:41:32] 2026-01-09 10:40:28,484 | INFO     | architecture information:
[2026-01-09 11:41:32] 2026-01-09 10:40:28,484 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:41:32] 2026-01-09 10:40:28,505 | INFO     | cat /etc/os-release:
[2026-01-09 11:41:32] NAME="CentOS Linux"
[2026-01-09 11:41:32] VERSION="7 (Core)"
[2026-01-09 11:41:32] ID="centos"
[2026-01-09 11:41:32] ID_LIKE="rhel fedora"
[2026-01-09 11:41:32] VERSION_ID="7"
[2026-01-09 11:41:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:41:32] ANSI_COLOR="0;31"
[2026-01-09 11:41:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:41:32] HOME_URL="https://www.centos.org/"
[2026-01-09 11:41:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:41:32] 
[2026-01-09 11:41:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:41:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:41:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:41:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:41:32] 
[2026-01-09 11:41:32] 2026-01-09 10:40:28,506 | INFO     | ***************************************
[2026-01-09 11:41:32] 2026-01-09 10:40:29,009 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-01-09 11:41:32] 2026-01-09 10:40:29,026 | INFO     | sufficient remaining disk space (498113445888 B)
[2026-01-09 11:41:32] 2026-01-09 10:40:29,026 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:41:32] 2026-01-09 10:40:29,026 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:41:32] 2026-01-09 10:40:29,026 | INFO     | update_server=False
[2026-01-09 11:41:32] 2026-01-09 10:40:29,026 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:41:32] 2026-01-09 10:40:29,027 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:41:32] 2026-01-09 10:40:29,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:41:32] 2026-01-09 10:40:29,129 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:41:32] 2026-01-09 10:40:29,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:41:32] 2026-01-09 10:40:29,466 | INFO     | aborting loop
[2026-01-09 11:41:32] 2026-01-09 10:40:29,516 | INFO     | all payload control threads have been joined
[2026-01-09 11:41:32] 2026-01-09 10:40:29,531 | INFO     | all data control threads have been joined
[2026-01-09 11:41:32] 2026-01-09 10:40:30,032 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:30,033 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:30,238 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:30,358 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:30,375 | INFO     | all job control threads have been joined
[2026-01-09 11:41:32] 2026-01-09 10:40:30,471 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:30,521 | INFO     | [payload] control thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:30,536 | INFO     | [data] control thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:31,072 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:31,135 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:31,219 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:31,285 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:31,380 | INFO     | [job] control thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:31,384 | INFO     | [job] validate thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:31,533 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:33,033 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:39,574 | INFO     | job.realtimelogging is not enabled
[2026-01-09 11:41:32] 2026-01-09 10:40:40,579 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:41:32] 2026-01-09 10:40:59,396 | INFO     | PID=12780 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 11:41:32] 2026-01-09 10:40:59,397 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:41:32] 2026-01-09 10:40:59,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:41:32] 2026-01-09 10:40:59,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:41:32] 2026-01-09 10:41:26,132 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:41:32] 2026-01-09 10:41:26,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140462650099520)>', '<ExcThread(monitor, started 140461922572032)>']
[2026-01-09 11:41:32] 2026-01-09 10:41:27,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:41:32] 2026-01-09 10:41:27,542 | INFO     | [monitor] control thread has ended
[2026-01-09 11:41:32] 2026-01-09 10:41:31,682 | INFO     | all workflow threads have been joined
[2026-01-09 11:41:32] 2026-01-09 10:41:31,683 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:41:32] 2026-01-09 10:41:31,683 | INFO     | traces error code: 0
[2026-01-09 11:41:32] 2026-01-09 10:41:31,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:41:32] 2026-01-09 10:41:31,820 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:41:32] 2026-01-09 10:41:31,825 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:41:32] 2026-01-09 10:41:31,831 [wrapper] pilotpid: 12780
[2026-01-09 11:41:32] 2026-01-09 10:41:31,835 [wrapper] Pilot exit status: 0
[2026-01-09 11:41:32] 2026-01-09 10:41:31,853 [wrapper] pandaids: 6963151459
[2026-01-09 11:41:32] 2026-01-09 10:41:31,884 [wrapper] cleanup supervisor_pilot  5740 12781
[2026-01-09 11:41:32] 2026-01-09 10:41:31,892 [wrapper] Test setup, not cleaning
[2026-01-09 11:41:32] 2026-01-09 10:41:31,895 [wrapper] apfmon messages muted
[2026-01-09 11:41:32] 2026-01-09 10:41:31,898 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:41:32] 2026-01-09 10:41:31,902 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:41:32]  *** Error codes and diagnostics ***
[2026-01-09 11:41:32]     "exeErrorCode": 0,
[2026-01-09 11:41:32]     "exeErrorDiag": "",
[2026-01-09 11:41:32]     "pilotErrorCode": 0,
[2026-01-09 11:41:32]     "pilotErrorDiag": "",
[2026-01-09 11:41:32]  *** Listing of results directory ***
[2026-01-09 11:41:32] total 446032
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc      5112 Jan  8 17:02 queuedata.json
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 11:41:32] -rwx------. 1 boinc boinc     36322 Jan  8 17:02 runpilot2-wrapper.sh
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc       100 Jan  9 08:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:41:32] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 08:51 run_atlas
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc       105 Jan  9 08:51 job.xml
[2026-01-09 11:41:32] -rw-r--r--. 2 boinc boinc 224577572 Jan  9 08:51 EVNT.47898824._001091.pool.root.1
[2026-01-09 11:41:32] -rw-r--r--. 2 boinc boinc     15847 Jan  9 08:51 start_atlas.sh
[2026-01-09 11:41:32] drwxrwx--x. 2 boinc boinc        68 Jan  9 08:51 shared
[2026-01-09 11:41:32] -rw-r--r--. 2 boinc boinc    592395 Jan  9 08:51 input.tar.gz
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc      6390 Jan  9 08:51 init_data.xml
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc         0 Jan  9 08:51 boinc_lockfile
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc      2520 Jan  9 08:51 pandaJob.out
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc    989771 Jan  9 08:52 agis_schedconf.cvmfs.json
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc   1516240 Jan  9 08:52 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:41:32] drwx------. 5 boinc boinc      4096 Jan  9 08:52 pilot3
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc 224711210 Jan  9 11:39 HITS.47898826._028497.pool.root.1
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc       530 Jan  9 11:39 boinc_task_state.xml
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc        95 Jan  9 11:40 pilot_heartbeat.json
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc      1010 Jan  9 11:40 memory_monitor_summary.json
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc    414436 Jan  9 11:40 log.47898826._028497.job.log.tgz.1
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc      7770 Jan  9 11:40 heartbeat.json
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc      8192 Jan  9 11:40 boinc_mmap_file
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc        28 Jan  9 11:40 wrapper_checkpoint.txt
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc      4881 Jan  9 11:41 pilotlog.txt
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc   1357352 Jan  9 11:41 log.47898826._028497.job.log.1
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc       357 Jan  9 11:41 output.list
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc       620 Jan  9 11:41 runtime_log
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc   1792000 Jan  9 11:41 result.tar.gz
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc      8817 Jan  9 11:41 runtime_log.err
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc       655 Jan  9 11:41 CVgKDm6d7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmbefKDmWOpDlm.diag
[2026-01-09 11:41:32] -rw-r--r--. 1 boinc boinc     20932 Jan  9 11:41 stderr.txt
[2026-01-09 11:41:32] HITS file was successfully produced:
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc 224711210 Jan  9 11:39 shared/HITS.pool.root.1
[2026-01-09 11:41:32]  *** Contents of shared directory: ***
[2026-01-09 11:41:32] total 441112
[2026-01-09 11:41:32] -rw-r--r--. 2 boinc boinc 224577572 Jan  9 08:51 ATLAS.root_0
[2026-01-09 11:41:32] -rw-r--r--. 2 boinc boinc     15847 Jan  9 08:51 start_atlas.sh
[2026-01-09 11:41:32] -rw-r--r--. 2 boinc boinc    592395 Jan  9 08:51 input.tar.gz
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc 224711210 Jan  9 11:39 HITS.pool.root.1
[2026-01-09 11:41:32] -rw-------. 1 boinc boinc   1792000 Jan  9 11:41 result.tar.gz
11:41:33 (9049): run_atlas exited; CPU time 75746.264244
11:41:33 (9049): called boinc_finish(0)

</stderr_txt>
]]>

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