Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:28 (453123): wrapper (7.7.26015): starting
00:02:28 (453123): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 00:02:28] Arguments: --nthreads 8
[2026-01-09 00:02:28] Threads: 8
[2026-01-09 00:02:28] Checking for CVMFS
[2026-01-09 00:02:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:02:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:02:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:02:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:02:32] 2.13.3.0 9702 92966 335420 154931 0 305 29564004 32935936 20941 16776704 0 432096718 99.692 328419600 32399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:02:32] CVMFS is ok
[2026-01-09 00:02:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:02:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:02:32] Further information can be found at the LHC@home message board.
[2026-01-09 00:02:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:02:32] Checking for apptainer binary...
[2026-01-09 00:02:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:02:32] Running /usr/bin/apptainer --version
[2026-01-09 00:02:32] apptainer version 1.4.5-2.el9
[2026-01-09 00:02:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:02:33] c-4-37.aglt2.org
[2026-01-09 00:02:33] apptainer works
[2026-01-09 00:02:33] Set ATHENA_PROC_NUMBER=8
[2026-01-09 00:02:33] Set ATHENA_CORE_NUMBER=8
[2026-01-09 00:02:34] Starting ATLAS job with PandaID=6963147600
[2026-01-09 00:02:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 00:04:37]  *** The last 200 lines of the pilot log: ***
[2026-01-10 00:04:38] 2026-01-10 05:02:37,664 | INFO     | mean x: 1767978300.171753
[2026-01-10 00:04:38] 2026-01-10 05:02:37,664 | INFO     | mean y: 2490474.239176721
[2026-01-10 00:04:38] 2026-01-10 05:02:37,665 | INFO     | intersect: -3214359768.0860753
[2026-01-10 00:04:38] 2026-01-10 05:02:37,667 | INFO     | chi2: 10.379509515612733
[2026-01-10 00:04:38] 2026-01-10 05:02:37,669 | INFO     | sum of square deviations: 858175879082.4857
[2026-01-10 00:04:38] 2026-01-10 05:02:38,136 | INFO     | sum of deviations: 1939465378835.7776
[2026-01-10 00:04:38] 2026-01-10 05:02:38,136 | INFO     | mean x: 1767978147.6780627
[2026-01-10 00:04:38] 2026-01-10 05:02:38,136 | INFO     | mean y: 2496458.034900285
[2026-01-10 00:04:38] 2026-01-10 05:02:38,136 | INFO     | intersect: -3993109211.5463
[2026-01-10 00:04:38] 2026-01-10 05:02:38,138 | INFO     | chi2: 7.4906006894973
[2026-01-10 00:04:38] 2026-01-10 05:02:38,138 | INFO     | current chi2=7.4906006894973 (change=27.832806759991612 %)
[2026-01-10 00:04:38] 2026-01-10 05:02:38,184 | INFO     | sum of square deviations: 849040294291.8835
[2026-01-10 00:04:38] 2026-01-10 05:02:38,748 | INFO     | sum of deviations: 1930558828577.31
[2026-01-10 00:04:38] 2026-01-10 05:02:38,748 | INFO     | mean x: 1767977995.1815584
[2026-01-10 00:04:38] 2026-01-10 05:02:38,748 | INFO     | mean y: 2496309.3609721228
[2026-01-10 00:04:38] 2026-01-10 05:02:38,749 | INFO     | intersect: -4017554977.103394
[2026-01-10 00:04:38] 2026-01-10 05:02:38,798 | INFO     | chi2: 7.490231302061055
[2026-01-10 00:04:38] 2026-01-10 05:02:38,798 | INFO     | current chi2=7.490231302061055 (change=0.004931345983545116 %)
[2026-01-10 00:04:38] 2026-01-10 05:02:38,798 | INFO     | right removable region: 1398
[2026-01-10 00:04:38] 2026-01-10 05:02:38,800 | INFO     | sum of square deviations: 858174269596.1273
[2026-01-10 00:04:38] 2026-01-10 05:02:39,655 | INFO     | sum of deviations: 1104388782506.81
[2026-01-10 00:04:38] 2026-01-10 05:02:39,655 | INFO     | mean x: 1767978452.6787748
[2026-01-10 00:04:38] 2026-01-10 05:02:39,655 | INFO     | mean y: 2498325.168091168
[2026-01-10 00:04:38] 2026-01-10 05:02:39,655 | INFO     | intersect: -2272722035.110347
[2026-01-10 00:04:38] 2026-01-10 05:02:39,688 | INFO     | chi2: 6.361826442249898
[2026-01-10 00:04:38] 2026-01-10 05:02:39,688 | INFO     | current chi2=6.361826442249898 (change=38.70783168818801 %)
[2026-01-10 00:04:38] 2026-01-10 05:02:39,690 | INFO     | sum of square deviations: 849037675675.7897
[2026-01-10 00:04:38] 2026-01-10 05:02:39,870 | INFO     | monitor loop #3387: job 0:6963147600 is in state 'finished'
[2026-01-10 00:04:38] 2026-01-10 05:02:39,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 00:04:38] 2026-01-10 05:02:40,708 | INFO     | sum of deviations: 760428739237.5305
[2026-01-10 00:04:38] 2026-01-10 05:02:40,709 | INFO     | mean x: 1767978605.1837027
[2026-01-10 00:04:38] 2026-01-10 05:02:40,709 | INFO     | mean y: 2504065.4882058613
[2026-01-10 00:04:38] 2026-01-10 05:02:40,709 | INFO     | intersect: -1580961286.2332962
[2026-01-10 00:04:38] 2026-01-10 05:02:40,738 | INFO     | chi2: 4.306007661398369
[2026-01-10 00:04:38] 2026-01-10 05:02:40,739 | INFO     | current chi2=4.306007661398369 (change=32.31491458488258 %)
[2026-01-10 00:04:38] 2026-01-10 05:02:40,740 | INFO     | sum of square deviations: 839966237957.2583
[2026-01-10 00:04:38] 2026-01-10 05:02:41,951 | INFO     | sum of deviations: 565812851951.4121
[2026-01-10 00:04:38] 2026-01-10 05:02:41,951 | INFO     | mean x: 1767978757.6879485
[2026-01-10 00:04:38] 2026-01-10 05:02:41,951 | INFO     | mean y: 2507335.8400286944
[2026-01-10 00:04:38] 2026-01-10 05:02:41,952 | INFO     | intersect: -1188427558.769194
[2026-01-10 00:04:38] 2026-01-10 05:02:42,151 | INFO     | chi2: 3.6385256713756817
[2026-01-10 00:04:38] 2026-01-10 05:02:42,151 | INFO     | current chi2=3.6385256713756817 (change=15.501179805284501 %)
[2026-01-10 00:04:38] 2026-01-10 05:02:42,151 | INFO     | left removable region: 30
[2026-01-10 00:04:38] 2026-01-10 05:02:42,298 | INFO     | sum of square deviations: 793837779357.5072
[2026-01-10 00:04:38] 2026-01-10 05:02:42,414 | INFO     | monitor loop #3388: job 0:6963147600 is in state 'finished'
[2026-01-10 00:04:38] 2026-01-10 05:02:42,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 00:04:38] 2026-01-10 05:02:44,123 | INFO     | sum of deviations: 632202326585.3821
[2026-01-10 00:04:38] 2026-01-10 05:02:44,123 | INFO     | mean x: 1767978879.7032163
[2026-01-10 00:04:38] 2026-01-10 05:02:44,124 | INFO     | mean y: 2518326.072368421
[2026-01-10 00:04:38] 2026-01-10 05:02:44,124 | INFO     | intersect: -1405477602.2731154
[2026-01-10 00:04:38] 2026-01-10 05:02:44,125 | INFO     | chi2: 0.22579060189156983
[2026-01-10 00:04:38] 2026-01-10 05:02:44,126 | INFO     | current memory leak: 0.80 B/s (using 1368 data points, chi2=0.23)
[2026-01-10 00:04:38] 2026-01-10 05:02:44,265 | INFO     | could have reported an average CPU frequency of 2599 MHz (49 samples)
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | ..............................
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . Timing measurements:
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . get job = 1 s
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . initial setup = 11 s
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . payload setup = 67 s
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . stage-in = 0 s
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . payload execution = 85983 s
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . stage-out = 12 s
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | . log creation = 4 s
[2026-01-10 00:04:38] 2026-01-10 05:02:44,266 | INFO     | ..............................
[2026-01-10 00:04:38] 2026-01-10 05:02:45,802 | INFO     | 
[2026-01-10 00:04:38] 2026-01-10 05:02:45,802 | INFO     | job summary report
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | --------------------------------------------------
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | PanDA job id: 6963147600
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | task id: 47898826
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | errors: (none)
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | pilot state: finished 
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | transexitcode: 0
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | exeerrorcode: 0
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | exeerrordiag: 
[2026-01-10 00:04:38] 2026-01-10 05:02:45,803 | INFO     | exitcode: 0
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | exitmsg: OK
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | cpuconsumptiontime: 70874 s
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | nevents: 400
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | neventsw: 0
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | pid: 539535
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | pgrp: 539535
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | corecount: 8
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | event service: False
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | sizes: {0: 2283141, 1: 2283742, 2: 2283854, 3: 2284025, 4: 2284053, 5: 2284081, 16: 2284265, 27: 2284293, 40: 2284321, 52: 2284349, 65: 2284377, 70: 2284947, 77: 2
[2026-01-10 00:04:38] 2026-01-10 05:02:45,804 | INFO     | --------------------------------------------------
[2026-01-10 00:04:38] 2026-01-10 05:02:45,805 | INFO     | 
[2026-01-10 00:04:38] 2026-01-10 05:02:45,822 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-10 00:04:38] 2026-01-10 05:02:46,009 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,010 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,010 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,010 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,010 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,010 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 00:04:38] 2026-01-10 05:02:46,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,012 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 00:04:38] 2026-01-10 05:02:46,012 | INFO     | job 6963147600 has completed (purged errors)
[2026-01-10 00:04:38] 2026-01-10 05:02:46,012 | INFO     | overall cleanup function is called
[2026-01-10 00:04:38] 2026-01-10 05:02:47,052 | INFO     | --- collectZombieJob: --- 10, [539535]
[2026-01-10 00:04:38] 2026-01-10 05:02:47,052 | INFO     | zombie collector waiting for pid 539535
[2026-01-10 00:04:38] 2026-01-10 05:02:47,052 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 00:04:38] 2026-01-10 05:02:47,052 | INFO     | collected zombie processes
[2026-01-10 00:04:38] 2026-01-10 05:02:47,053 | INFO     | will attempt to kill all subprocesses of pid=539535
[2026-01-10 00:04:38] 2026-01-10 05:02:52,014 | INFO     | PID=488212 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 00:04:38] 2026-01-10 05:02:52,015 | INFO     | .. there are 43 such processes running
[2026-01-10 00:04:38] 2026-01-10 05:02:52,708 | INFO     | process IDs to be killed: [539535] (in reverse order)
[2026-01-10 00:04:38] 2026-01-10 05:02:53,103 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 00:04:38] 2026-01-10 05:02:53,103 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 00:04:38] 2026-01-10 05:02:53,285 | INFO     | did not find any defunct processes belonging to 539535
[2026-01-10 00:04:38] 2026-01-10 05:02:53,471 | INFO     | did not find any defunct processes belonging to 539535
[2026-01-10 00:04:38] 2026-01-10 05:02:53,472 | INFO     | ready for new job
[2026-01-10 00:04:38] 2026-01-10 05:02:53,472 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 00:04:38] 2026-01-10 05:02:53,552 | INFO     | ***************************************
[2026-01-10 00:04:38] 2026-01-10 05:02:53,552 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 00:04:38] 2026-01-10 05:02:53,552 | INFO     | ***************************************
[2026-01-10 00:04:38] 2026-01-10 05:02:53,552 | INFO     | 
[2026-01-10 00:04:38] 2026-01-10 05:02:53,554 | INFO     | architecture information:
[2026-01-10 00:04:38] 2026-01-10 05:02:53,561 | INFO     | executing command: cat /etc/os-release
[2026-01-10 00:04:38] 2026-01-10 05:02:53,817 | INFO     | cat /etc/os-release:
[2026-01-10 00:04:38] NAME="CentOS Linux"
[2026-01-10 00:04:38] VERSION="7 (Core)"
[2026-01-10 00:04:38] ID="centos"
[2026-01-10 00:04:38] ID_LIKE="rhel fedora"
[2026-01-10 00:04:38] VERSION_ID="7"
[2026-01-10 00:04:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 00:04:38] ANSI_COLOR="0;31"
[2026-01-10 00:04:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 00:04:38] HOME_URL="https://www.centos.org/"
[2026-01-10 00:04:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 00:04:38] 
[2026-01-10 00:04:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 00:04:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 00:04:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 00:04:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 00:04:38] 
[2026-01-10 00:04:38] 2026-01-10 05:02:53,818 | INFO     | ***************************************
[2026-01-10 00:04:38] 2026-01-10 05:02:54,321 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-10 00:04:38] 2026-01-10 05:02:54,394 | INFO     | sufficient remaining disk space (75128373248 B)
[2026-01-10 00:04:38] 2026-01-10 05:02:54,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 00:04:38] 2026-01-10 05:02:54,395 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 00:04:38] 2026-01-10 05:02:54,395 | INFO     | update_server=False
[2026-01-10 00:04:38] 2026-01-10 05:02:54,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 00:04:38] 2026-01-10 05:02:54,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:04:38] 2026-01-10 05:02:54,396 | INFO     | aborting loop
[2026-01-10 00:04:38] 2026-01-10 05:02:54,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 00:04:38] 2026-01-10 05:02:54,611 | INFO     | all job control threads have been joined
[2026-01-10 00:04:38] 2026-01-10 05:02:54,652 | INFO     | all data control threads have been joined
[2026-01-10 00:04:38] 2026-01-10 05:02:55,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:04:38] 2026-01-10 05:02:55,161 | INFO     | all payload control threads have been joined
[2026-01-10 00:04:38] 2026-01-10 05:02:55,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 00:04:38] 2026-01-10 05:02:55,401 | INFO     | [job] retrieve thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:55,404 | INFO     | [data] copytool_in thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:55,405 | INFO     | [job] job monitor thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:55,617 | INFO     | [job] control thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:55,658 | INFO     | [data] control thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:55,905 | INFO     | [job] validate thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,056 | INFO     | [job] queue monitor thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,120 | INFO     | [payload] validate_post thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,167 | INFO     | [payload] control thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,268 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,338 | INFO     | [payload] failed_post thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,411 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,458 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,458 | INFO     | [data] copytool_out thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:56,796 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:02:59,383 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 00:04:38] 2026-01-10 05:03:10,257 | INFO     | [monitor] cgroup control has ended
[2026-01-10 00:04:38] 2026-01-10 05:03:10,352 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140044455290688)>', '<ExcThread(monitor, started 140043968567040)>']
[2026-01-10 00:04:38] 2026-01-10 05:03:15,387 | INFO     | all workflow threads have been joined
[2026-01-10 00:04:38] 2026-01-10 05:03:15,387 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 00:04:38] 2026-01-10 05:03:15,387 | INFO     | traces error code: 0
[2026-01-10 00:04:38] 2026-01-10 05:03:15,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 00:04:38] 2026-01-10 05:03:28,380 | INFO     | PID=488212 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-10 00:04:38] 2026-01-10 05:03:28,381 | INFO     | .. there are 43 such processes running
[2026-01-10 00:04:38] 2026-01-10 05:03:28,381 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 00:04:38] 2026-01-10 05:03:28,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 00:04:38] 2026-01-10 05:03:28,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 00:04:38] 2026-01-10 05:03:28,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 00:04:38] 2026-01-10 05:03:28,382 | INFO     | [monitor] control thread has ended
[2026-01-10 00:04:38] 2026-01-10 05:03:28,671 [wrapper] ==== pilot stdout END ====
[2026-01-10 00:04:38] 2026-01-10 05:03:28,773 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 00:04:38] 2026-01-10 05:03:28,826 [wrapper] pilotpid: 488212
[2026-01-10 00:04:38] 2026-01-10 05:03:28,858 [wrapper] Pilot exit status: 0
[2026-01-10 00:04:38] 2026-01-10 05:03:29,111 [wrapper] pandaids: 6963147600
[2026-01-10 00:04:38] 2026-01-10 05:03:32,907 [wrapper] cleanup supervisor_pilot 3557855 488214
[2026-01-10 00:04:38] 2026-01-10 05:03:32,984 [wrapper] Test setup, not cleaning
[2026-01-10 00:04:38] 2026-01-10 05:03:33,033 [wrapper] apfmon messages muted
[2026-01-10 00:04:38] 2026-01-10 05:03:33,101 [wrapper] ==== wrapper stdout END ====
[2026-01-10 00:04:38] 2026-01-10 05:03:33,147 [wrapper] ==== wrapper stderr END ====
[2026-01-10 00:04:38]  *** Error codes and diagnostics ***
[2026-01-10 00:04:38]     "exeErrorCode": 0,
[2026-01-10 00:04:38]     "exeErrorDiag": "",
[2026-01-10 00:04:38]     "pilotErrorCode": 0,
[2026-01-10 00:04:38]     "pilotErrorDiag": "",
[2026-01-10 00:04:38]  *** Listing of results directory ***
[2026-01-10 00:04:38] total 452176
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-10 00:04:38] -rwx------. 1 boincer umatlas     36322 Jan  8 11:05 runpilot2-wrapper.sh
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:07 queuedata.json
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 00:04:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:02 run_atlas
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:02 job.xml
[2026-01-10 00:04:38] -rw-r--r--. 2 boincer umatlas 222353398 Jan  9 00:02 EVNT.47898824._000814.pool.root.1
[2026-01-10 00:04:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:02 start_atlas.sh
[2026-01-10 00:04:38] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:02 shared
[2026-01-10 00:04:38] -rw-r--r--. 2 boincer umatlas    592395 Jan  9 00:02 input.tar.gz
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:02 boinc_lockfile
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 00:02 pandaJob.out
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas        57 Jan  9 00:02 setup.sh.local
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas    989771 Jan  9 00:04 agis_schedconf.cvmfs.json
[2026-01-10 00:04:38] drwx------. 5 boincer umatlas      4096 Jan  9 00:04 pilot3
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas 217942346 Jan  9 23:56 HITS.47898826._027718.pool.root.1
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas       530 Jan  9 23:57 boinc_task_state.xml
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas      1056 Jan 10 00:01 memory_monitor_summary.json
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas   1516240 Jan 10 00:01 agis_ddmendpoints.agis.ALL.json
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas   1198779 Jan 10 00:01 log.47898826._027718.job.log.tgz.1
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas      7850 Jan 10 00:02 heartbeat.json
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas        95 Jan 10 00:02 pilot_heartbeat.json
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas       822 Jan 10 00:03 pilotlog.txt
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas   8212246 Jan 10 00:03 log.47898826._027718.job.log.1
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas       357 Jan 10 00:03 output.list
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas       620 Jan 10 00:03 runtime_log
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas   9431040 Jan 10 00:03 result.tar.gz
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas      9333 Jan 10 00:03 runtime_log.err
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas       659 Jan 10 00:03 h41LDm1g7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWmfKDmK8Uvhn.diag
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas      6661 Jan 10 00:04 init_data.xml
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 00:04 boinc_mmap_file
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas        27 Jan 10 00:04 wrapper_checkpoint.txt
[2026-01-10 00:04:38] -rw-r--r--. 1 boincer umatlas     21277 Jan 10 00:04 stderr.txt
[2026-01-10 00:04:38] HITS file was successfully produced:
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas 217942346 Jan  9 23:56 shared/HITS.pool.root.1
[2026-01-10 00:04:38]  *** Contents of shared directory: ***
[2026-01-10 00:04:38] total 439792
[2026-01-10 00:04:38] -rw-r--r--. 2 boincer umatlas 222353398 Jan  9 00:02 ATLAS.root_0
[2026-01-10 00:04:38] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:02 start_atlas.sh
[2026-01-10 00:04:38] -rw-r--r--. 2 boincer umatlas    592395 Jan  9 00:02 input.tar.gz
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas 217942346 Jan  9 23:56 HITS.pool.root.1
[2026-01-10 00:04:38] -rw-------. 1 boincer umatlas   9431040 Jan 10 00:03 result.tar.gz
00:04:39 (453123): run_atlas exited; CPU time 74382.652625
00:04:39 (453123): called boinc_finish(0)

</stderr_txt>
]]>

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