Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:26 (3903500): wrapper (7.7.26015): starting
00:03:26 (3903500): wrapper: running run_atlas (--nthreads 11)
[2026-01-09 00:03:26] Arguments: --nthreads 11
[2026-01-09 00:03:26] Threads: 11
[2026-01-09 00:03:26] Checking for CVMFS
[2026-01-09 00:03:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:03:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:03:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:03:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:03:28] 2.13.3.0 11323 92965 332852 154931 2 451 30892295 32935937 13434 16776704 0 311371548 99.419 488582920 39987 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:03:28] CVMFS is ok
[2026-01-09 00:03:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:03:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:03:28] Further information can be found at the LHC@home message board.
[2026-01-09 00:03:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:03:28] Checking for apptainer binary...
[2026-01-09 00:03:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:03:28] Running /usr/bin/apptainer --version
[2026-01-09 00:03:28] apptainer version 1.4.5-2.el9
[2026-01-09 00:03:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:03:29] c6-4-5-3.aglt2.org
[2026-01-09 00:03:29] apptainer works
[2026-01-09 00:03:29] Set ATHENA_PROC_NUMBER=11
[2026-01-09 00:03:29] Set ATHENA_CORE_NUMBER=11
[2026-01-09 00:03:29] Starting ATLAS job with PandaID=6963148464
[2026-01-09 00:03:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:02:32]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:02:32] 2026-01-09 11:38:12,254 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6963148464/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,255 | INFO     | extracted standard info from prmon json
[2026-01-09 07:02:32] 2026-01-09 11:38:12,255 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 07:02:32] 2026-01-09 11:38:12,256 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 07:02:32] 2026-01-09 11:38:12,256 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:02:32] 2026-01-09 11:38:12,256 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:02:32] 2026-01-09 11:38:12,336 | INFO     | fitting pss+swap vs Time
[2026-01-09 07:02:32] 2026-01-09 11:38:12,337 | INFO     | sum of square deviations: 17696822198.976673
[2026-01-09 07:02:32] 2026-01-09 11:38:12,340 | INFO     | sum of deviations: 182240056311.78442
[2026-01-09 07:02:32] 2026-01-09 11:38:12,340 | INFO     | mean x: 1767946922.1350648
[2026-01-09 07:02:32] 2026-01-09 11:38:12,341 | INFO     | mean y: 2600492.023376623
[2026-01-09 07:02:32] 2026-01-09 11:38:12,341 | INFO     | intersect: -18203535221.131443
[2026-01-09 07:02:32] 2026-01-09 11:38:12,341 | INFO     | chi2: 4.725207856381413
[2026-01-09 07:02:32] 2026-01-09 11:38:12,342 | INFO     | sum of square deviations: 17016323455.884247
[2026-01-09 07:02:32] 2026-01-09 11:38:12,345 | INFO     | sum of deviations: 205572229760.5319
[2026-01-09 07:02:32] 2026-01-09 11:38:12,345 | INFO     | mean x: 1767946769.636842
[2026-01-09 07:02:32] 2026-01-09 11:38:12,345 | INFO     | mean y: 2605660.5763157895
[2026-01-09 07:02:32] 2026-01-09 11:38:12,345 | INFO     | intersect: -21355754179.868366
[2026-01-09 07:02:32] 2026-01-09 11:38:12,346 | INFO     | chi2: 4.034601396752408
[2026-01-09 07:02:32] 2026-01-09 11:38:12,346 | INFO     | current chi2=4.034601396752408 (change=14.61536678638037 %)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,346 | INFO     | right removable region: 379
[2026-01-09 07:02:32] 2026-01-09 11:38:12,347 | INFO     | sum of square deviations: 17016197064.747383
[2026-01-09 07:02:32] 2026-01-09 11:38:12,350 | INFO     | sum of deviations: 64319547429.75784
[2026-01-09 07:02:32] 2026-01-09 11:38:12,350 | INFO     | mean x: 1767947074.6473684
[2026-01-09 07:02:32] 2026-01-09 11:38:12,351 | INFO     | mean y: 2626883.057894737
[2026-01-09 07:02:32] 2026-01-09 11:38:12,351 | INFO     | intersect: -6680038772.987222
[2026-01-09 07:02:32] 2026-01-09 11:38:12,351 | INFO     | chi2: 1.5560477345640842
[2026-01-09 07:02:32] 2026-01-09 11:38:12,351 | INFO     | current chi2=1.5560477345640842 (change=67.0692214637154 %)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,352 | INFO     | sum of square deviations: 16353247168.400047
[2026-01-09 07:02:32] 2026-01-09 11:38:12,355 | INFO     | sum of deviations: 9555916776.840065
[2026-01-09 07:02:32] 2026-01-09 11:38:12,355 | INFO     | mean x: 1767947227.16
[2026-01-09 07:02:32] 2026-01-09 11:38:12,355 | INFO     | mean y: 2639465.4693333334
[2026-01-09 07:02:32] 2026-01-09 11:38:12,355 | INFO     | intersect: -1030449339.1340531
[2026-01-09 07:02:32] 2026-01-09 11:38:12,356 | INFO     | chi2: 0.8877478776418195
[2026-01-09 07:02:32] 2026-01-09 11:38:12,356 | INFO     | current chi2=0.8877478776418195 (change=42.94854470576278 %)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,357 | INFO     | sum of square deviations: 15707716339.081076
[2026-01-09 07:02:32] 2026-01-09 11:38:12,360 | INFO     | sum of deviations: -16707629923.43243
[2026-01-09 07:02:32] 2026-01-09 11:38:12,360 | INFO     | mean x: 1767947379.6756756
[2026-01-09 07:02:32] 2026-01-09 11:38:12,360 | INFO     | mean y: 2645653.0297297295
[2026-01-09 07:02:32] 2026-01-09 11:38:12,360 | INFO     | intersect: 1883136101.5509884
[2026-01-09 07:02:32] 2026-01-09 11:38:12,361 | INFO     | chi2: 0.7152353418628316
[2026-01-09 07:02:32] 2026-01-09 11:38:12,361 | INFO     | current chi2=0.7152353418628316 (change=19.432604698221734 %)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,361 | INFO     | left removable region: 30
[2026-01-09 07:02:32] 2026-01-09 11:38:12,361 | INFO     | sum of square deviations: 13182052340.882517
[2026-01-09 07:02:32] 2026-01-09 11:38:12,364 | INFO     | sum of deviations: 2897385708.0659018
[2026-01-09 07:02:32] 2026-01-09 11:38:12,364 | INFO     | mean x: 1767947654.2148998
[2026-01-09 07:02:32] 2026-01-09 11:38:12,364 | INFO     | mean y: 2653018.0257879654
[2026-01-09 07:02:32] 2026-01-09 11:38:12,364 | INFO     | intersect: -385937933.7825516
[2026-01-09 07:02:32] 2026-01-09 11:38:12,365 | INFO     | chi2: 0.0020003035727430697
[2026-01-09 07:02:32] 2026-01-09 11:38:12,365 | INFO     | current memory leak: 0.22 B/s (using 349 data points, chi2=0.00)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | could have reported an average CPU frequency of 2972 MHz (16 samples)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | ..............................
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | . Timing measurements:
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | . get job = 0 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | . initial setup = 5 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | . payload setup = 40 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | . stage-in = 0 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | . payload execution = 23479 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,366 | INFO     | . stage-out = 4 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,367 | INFO     | . log creation = 1 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,367 | INFO     | ..............................
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | 
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | job summary report
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | --------------------------------------------------
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | PanDA job id: 6963148464
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | task id: 47898826
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | errors: (none)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | pilot state: finished 
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | transexitcode: 0
[2026-01-09 07:02:32] 2026-01-09 11:38:12,651 | INFO     | exeerrorcode: 0
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | exeerrordiag: 
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | exitcode: 0
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | exitmsg: OK
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | cpuconsumptiontime: 53640 s
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | nevents: 400
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | neventsw: 0
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | pid: 3931771
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | pgrp: 3931771
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | corecount: 11
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | event service: False
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | sizes: {0: 2283800, 1: 2283999, 2: 2283999, 13: 2284027, 23: 2284083, 30: 2284373, 34: 2284529, 23523: 2319216, 23528: 2328214, 23532: 2328270, 23555: 2328464}
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | --------------------------------------------------
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | 
[2026-01-09 07:02:32] 2026-01-09 11:38:12,652 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2026-01-09 07:02:32] 2026-01-09 11:38:12,854 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,854 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,854 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,854 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,854 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,854 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,855 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,856 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:02:32] 2026-01-09 11:38:12,856 | INFO     | job 6963148464 has completed (purged errors)
[2026-01-09 07:02:32] 2026-01-09 11:38:12,856 | INFO     | overall cleanup function is called
[2026-01-09 07:02:32] 2026-01-09 11:38:13,123 | INFO     | PID=3912054 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 07:02:32] 2026-01-09 11:38:13,123 | INFO     | .. there are 19 such processes running
[2026-01-09 07:02:32] 2026-01-09 11:38:13,870 | INFO     | --- collectZombieJob: --- 10, [3931771]
[2026-01-09 07:02:32] 2026-01-09 11:38:13,870 | INFO     | zombie collector waiting for pid 3931771
[2026-01-09 07:02:32] 2026-01-09 11:38:13,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:02:32] 2026-01-09 11:38:13,870 | INFO     | collected zombie processes
[2026-01-09 07:02:32] 2026-01-09 11:38:13,870 | INFO     | will attempt to kill all subprocesses of pid=3931771
[2026-01-09 07:02:32] 2026-01-09 11:38:14,619 | INFO     | process IDs to be killed: [3931771] (in reverse order)
[2026-01-09 07:02:32] 2026-01-09 11:38:14,923 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:02:32] 2026-01-09 11:38:14,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:02:32] 2026-01-09 11:38:14,945 | INFO     | did not find any defunct processes belonging to 3931771
[2026-01-09 07:02:32] 2026-01-09 11:38:14,957 | INFO     | did not find any defunct processes belonging to 3931771
[2026-01-09 07:02:32] 2026-01-09 11:38:14,958 | INFO     | ready for new job
[2026-01-09 07:02:32] 2026-01-09 11:38:14,958 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:02:32] 2026-01-09 11:38:14,964 | INFO     | ***************************************
[2026-01-09 07:02:32] 2026-01-09 11:38:14,965 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:02:32] 2026-01-09 11:38:14,965 | INFO     | ***************************************
[2026-01-09 07:02:32] 2026-01-09 11:38:14,965 | INFO     | 
[2026-01-09 07:02:32] 2026-01-09 11:38:14,972 | INFO     | architecture information:
[2026-01-09 07:02:32] 2026-01-09 11:38:14,973 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:02:32] 2026-01-09 11:38:15,053 | INFO     | cat /etc/os-release:
[2026-01-09 07:02:32] NAME="CentOS Linux"
[2026-01-09 07:02:32] VERSION="7 (Core)"
[2026-01-09 07:02:32] ID="centos"
[2026-01-09 07:02:32] ID_LIKE="rhel fedora"
[2026-01-09 07:02:32] VERSION_ID="7"
[2026-01-09 07:02:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:02:32] ANSI_COLOR="0;31"
[2026-01-09 07:02:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:02:32] HOME_URL="https://www.centos.org/"
[2026-01-09 07:02:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:02:32] 
[2026-01-09 07:02:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:02:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:02:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:02:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:02:32] 
[2026-01-09 07:02:32] 2026-01-09 11:38:15,053 | INFO     | ***************************************
[2026-01-09 07:02:32] 2026-01-09 11:38:15,591 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2026-01-09 07:02:32] 2026-01-09 11:38:15,735 | INFO     | sufficient remaining disk space (73246179328 B)
[2026-01-09 07:02:32] 2026-01-09 11:38:15,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:02:32] 2026-01-09 11:38:15,736 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:02:32] 2026-01-09 11:38:15,736 | INFO     | update_server=False
[2026-01-09 07:02:32] 2026-01-09 11:38:15,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:02:32] 2026-01-09 11:38:15,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:02:32] 2026-01-09 11:38:16,086 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 07:02:32] 2026-01-09 11:38:16,091 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 07:02:32] 2026-01-09 11:38:16,091 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:02:32] 2026-01-09 11:38:16,091 | INFO     | will abort loop
[2026-01-09 07:02:32] 2026-01-09 11:38:16,717 | INFO     | all data control threads have been joined
[2026-01-09 07:02:32] 2026-01-09 11:38:16,742 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:16,777 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:16,965 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:17,097 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:17,121 | INFO     | all payload control threads have been joined
[2026-01-09 07:02:32] 2026-01-09 11:38:17,426 | INFO     | all job control threads have been joined
[2026-01-09 07:02:32] 2026-01-09 11:38:17,538 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:17,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:02:32] 2026-01-09 11:38:17,602 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:17,723 | INFO     | [data] control thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:17,725 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:02:32] 2026-01-09 11:38:17,835 | INFO     | [job] validate thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:17,840 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:17,884 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:18,082 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:18,126 | INFO     | [payload] control thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:18,217 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:18,432 | INFO     | [job] control thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:18,731 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:21,584 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:02:32] 2026-01-09 11:38:47,705 | INFO     | PID=3912054 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 07:02:32] 2026-01-09 11:38:47,705 | INFO     | .. there are 19 such processes running
[2026-01-09 07:02:32] 2026-01-09 11:38:47,706 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:02:32] 2026-01-09 11:38:47,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:02:32] 2026-01-09 11:38:47,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:02:32] 2026-01-09 11:39:14,577 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:02:32] 2026-01-09 11:39:16,222 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140308753188672)>', '<ExcThread(monitor, started 140307983230720)>']
[2026-01-09 07:02:32] 2026-01-09 11:39:16,919 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:02:32] 2026-01-09 11:39:16,919 | INFO     | [monitor] control thread has ended
[2026-01-09 07:02:32] 2026-01-09 11:39:21,259 | INFO     | all workflow threads have been joined
[2026-01-09 07:02:32] 2026-01-09 11:39:21,259 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:02:32] 2026-01-09 11:39:21,259 | INFO     | traces error code: 0
[2026-01-09 07:02:32] 2026-01-09 11:39:21,260 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:02:32] 2026-01-09 11:39:21,920 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:02:32] 2026-01-09 11:39:21,935 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:02:32] 2026-01-09 11:39:21,961 [wrapper] pilotpid: 3912054
[2026-01-09 07:02:32] 2026-01-09 11:39:22,016 [wrapper] Pilot exit status: 0
[2026-01-09 07:02:32] 2026-01-09 11:39:22,036 [wrapper] pandaids: 6963148464
[2026-01-09 07:02:32] 2026-01-09 11:39:22,116 [wrapper] cleanup supervisor_pilot 1042825 3912055
[2026-01-09 07:02:32] 2026-01-09 11:39:22,136 [wrapper] Test setup, not cleaning
[2026-01-09 07:02:32] 2026-01-09 11:39:22,182 [wrapper] apfmon messages muted
[2026-01-09 07:02:32] 2026-01-09 11:39:22,241 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:02:32] 2026-01-09 11:39:22,272 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:02:32]  *** Error codes and diagnostics ***
[2026-01-09 07:02:32]     "exeErrorCode": 0,
[2026-01-09 07:02:32]     "exeErrorDiag": "",
[2026-01-09 07:02:32]     "pilotErrorCode": 0,
[2026-01-09 07:02:32]     "pilotErrorDiag": "",
[2026-01-09 07:02:32]  *** Listing of results directory ***
[2026-01-09 07:02:32] total 438448
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 07:02:32] -rwx------. 1 boincer umatlas     36322 Jan  8 11:06 runpilot2-wrapper.sh
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:02:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:03 run_atlas
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:03 job.xml
[2026-01-09 07:02:32] -rw-r--r--. 2 boincer umatlas 224732295 Jan  9 00:03 EVNT.47898824._001110.pool.root.1
[2026-01-09 07:02:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:03 start_atlas.sh
[2026-01-09 07:02:32] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:03 shared
[2026-01-09 07:02:32] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 00:03 input.tar.gz
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:03 boinc_lockfile
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 00:03 pandaJob.out
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas        57 Jan  9 00:03 setup.sh.local
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas    989771 Jan  9 00:04 agis_schedconf.cvmfs.json
[2026-01-09 07:02:32] drwx------. 5 boincer umatlas      4096 Jan  9 00:04 pilot3
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas 213389571 Jan  9 06:36 HITS.47898826._028135.pool.root.1
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas       530 Jan  9 06:37 boinc_task_state.xml
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas      1039 Jan  9 06:37 memory_monitor_summary.json
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas   1516240 Jan  9 06:37 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas    612098 Jan  9 06:37 log.47898826._028135.job.log.tgz.1
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas        95 Jan  9 06:37 pilot_heartbeat.json
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas      7820 Jan  9 06:38 heartbeat.json
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas      5010 Jan  9 06:39 pilotlog.txt
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas   2854030 Jan  9 06:39 log.47898826._028135.job.log.1
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas       357 Jan  9 06:39 output.list
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas       620 Jan  9 06:39 runtime_log
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas   3481600 Jan  9 06:39 result.tar.gz
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas      9345 Jan  9 06:39 runtime_log.err
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas       657 Jan  9 06:39 8naLDmAi7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGqfKDmjIGCjn.diag
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas      6875 Jan  9 07:02 init_data.xml
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 07:02 boinc_mmap_file
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas        27 Jan  9 07:02 wrapper_checkpoint.txt
[2026-01-09 07:02:32] -rw-r--r--. 1 boincer umatlas     21308 Jan  9 07:02 stderr.txt
[2026-01-09 07:02:32] HITS file was successfully produced:
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas 213389571 Jan  9 06:36 shared/HITS.pool.root.1
[2026-01-09 07:02:32]  *** Contents of shared directory: ***
[2026-01-09 07:02:32] total 431864
[2026-01-09 07:02:32] -rw-r--r--. 2 boincer umatlas 224732295 Jan  9 00:03 ATLAS.root_0
[2026-01-09 07:02:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:03 start_atlas.sh
[2026-01-09 07:02:32] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 00:03 input.tar.gz
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas 213389571 Jan  9 06:36 HITS.pool.root.1
[2026-01-09 07:02:32] -rw-------. 1 boincer umatlas   3481600 Jan  9 06:39 result.tar.gz
07:02:34 (3903500): run_atlas exited; CPU time 54416.478781
07:02:34 (3903500): called boinc_finish(0)

</stderr_txt>
]]>

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